Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

29552060 .. 29555548

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTTCTATTATTGCAAGCTTGCCTCCCCCATTGTTGGCCCAAAGTAGAAGAAACACCTTACTCACAGCTCTCCCAAAGCTACCAGTGTGTTCCTTTAAAGAGCGACAGAACCGTGTTGCTGTTGTGGTGAGGGCTACTAGTGAAAGCTCCGAGTCCTCTACCTCACTCAGTATAGTTAAGTCTGTTCAGAATGCTTGGGATAATTCTGAGGATCGAATAGCTCTTGTTGGTTTGGGATTTGCAGCTGTTGTGGCTCTTTGGGCATCAGCAAATCTGATTACGGCAATTGACAAGTTGCCGCTTCTCCCAAGTGTGCTAGAATTTGTTGGAATACTCTACTCTTCGAGTGCCATCTCTTTTAGGAAAAAAGAGTCTACCACAGTCCAAGGACAAACTACATGCACCGATGATTACCTAGCTAGAAAGCAACTGCCTCATAAACAGTTACCAGTCCTTTTAGGGACTGGCTTCCAAAGCAGGTGTTCTCACATCAAGCAGAACACCATGGCACCTTGCAAAGGAGGAAATGTCAATGAAAGTATGCGTTACTTGGAAGCCACGGCAATGGCGATGGTGGGAGAATACCAACAAGCCGTTTCGGCGGCCAACCTTGGAGGAAATCGAGATGTGCAGGCCGAACATATCAGCAACTGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

220

Amino Acids

23.63

Weight (kDa)

9.04

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	62 - 116	2.4e-16	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	471
Acc36I	ACCTGC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	377
AciI	CCGC	2 cut(s)	302, 605
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	37, 521
AhlI	ACTAGT	1 cut(s)	140
AluBI	AGCT	7 cut(s)	21, 71, 82, 150, 224, 248, 422
AluI	AGCT	7 cut(s)	21, 71, 82, 150, 224, 248, 422
AlwI	GGATC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	654
AoxI	GGCC	3 cut(s)	39, 606, 636
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	362, 568
BceAI	ACGGC	3 cut(s)	300, 579, 581
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	4 cut(s)	141, 320, 419, 423
BfuAI	ACCTGC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	3 cut(s)	246, 302, 606
BlsI	GCNGC	3 cut(s)	247, 303, 607
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	275
BsaJI	CCNNGG	4 cut(s)	388, 507, 561, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 521
Bse1I	ACTGG	3 cut(s)	86, 452, 472
Bse3DI	GCAATG	1 cut(s)	573
BseDI	CCNNGG	4 cut(s)	388, 507, 561, 613
BseLI	CCNNNNNNNGG	2 cut(s)	37, 521
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	184, 201
BseNI	ACTGG	3 cut(s)	86, 452, 472
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	3 cut(s)	41, 608, 638
BshNI	GGYRCC	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	37, 521
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	41, 608, 638
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	2 cut(s)	302, 605
BspANI	GGCC	3 cut(s)	41, 608, 638
BspCNI	CTCAG	2 cut(s)	183, 202
BspLI	GGNNCC	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	3 cut(s)	86, 452, 472
BssECI	CCNNGG	4 cut(s)	388, 507, 561, 613
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	3 cut(s)	388, 507, 613
Bst4CI	ACNGT	3 cut(s)	116, 385, 447
Bst6I	CTCTTC	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	19, 23, 636
BstDEI	CTNAG	2 cut(s)	170, 210
BstDSI	CCRYGG	2 cut(s)	507, 561
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 263, 477, 602
BstNSI	RCATGY	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	41, 608, 638
BtgI	CCRYGG	2 cut(s)	507, 561
BtgZI	GCGATG	1 cut(s)	587
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	19, 23, 636
CaiI	CAGNNNCTG	1 cut(s)	654
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	2 cut(s)	402, 508
DdeI	CTNAG	2 cut(s)	170, 210
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Eco130I	CCWWGG	3 cut(s)	388, 507, 613
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoT14I	CCWWGG	3 cut(s)	388, 507, 613
ErhI	CCWWGG	3 cut(s)	388, 507, 613
FaeI	CATG	2 cut(s)	405, 511
FaiI	YATR	6 cut(s)	176, 403, 441, 509, 545, 645
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	401, 507
FblI	GTMKAC	1 cut(s)	377
Fnu4HI	GCNGC	3 cut(s)	246, 302, 606
Fsp4HI	GCNGC	3 cut(s)	246, 302, 606
FspBI	CTAG	4 cut(s)	141, 320, 419, 423
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	3 cut(s)	246, 302, 606
HaeIII	GGCC	3 cut(s)	41, 608, 638
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	2 cut(s)	405, 511
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	155, 374
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	4 cut(s)	154, 192, 211, 279
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	1 cut(s)	378
HpyCH4III	ACNGT	3 cut(s)	116, 385, 447
HpyCH4V	TGCA	5 cut(s)	17, 245, 405, 519, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 263, 477, 602
HpyF3I	CTNAG	2 cut(s)	170, 210
Hsp92II	CATG	2 cut(s)	405, 511
HspAI	GCGC	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	99, 453, 465, 466, 620
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	4 cut(s)	141, 320, 419, 423
MaeIII	GTNAC	2 cut(s)	447, 548
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	63, 336
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	3 cut(s)	205, 288, 323
MlyI	GAGTC	2 cut(s)	164, 383
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	8 cut(s)	36, 126, 169, 175, 205, 447, 518, 611
MseI	TTAA	2 cut(s)	99, 180
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	254, 263, 477, 602
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	405, 511
NlaIV	GGNNCC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	405
PaqCI	CACCTGC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	247, 303, 607
PleI	GAGTC	2 cut(s)	163, 382
PpsI	GAGTC	2 cut(s)	163, 382
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	99, 180
SatI	GCNGC	3 cut(s)	246, 302, 606
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	164, 383
SfaNI	GCATC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	3 cut(s)	205, 288, 323
SsiI	CCGC	2 cut(s)	302, 605
SspMI	CTAG	4 cut(s)	141, 320, 419, 423
StyI	CCWWGG	3 cut(s)	388, 507, 613
TaaI	ACNGT	3 cut(s)	116, 385, 447
TaqI	TCGA	3 cut(s)	217, 347, 625
TasI	AATT	3 cut(s)	205, 288, 323
TauI	GCSGC	2 cut(s)	304, 608
Tru1I	TTAA	2 cut(s)	99, 180
Tru9I	TTAA	2 cut(s)	99, 180
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	377
XspI	CTAG	4 cut(s)	141, 320, 419, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.