Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Forward (+)

9996032 .. 10008889

Gene Structure 12858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3531 bp

ATGAAGAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTTCCGGACCCGGTCGTGAAATTTTCCGGCAAACTCAAAAACCCTAGCCGCGAGGACCATCAGAATTCGAAGGGCGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTCAAGCCAGAGAAATCAGTAGCGTACCATGTGTAGAAGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTTCTCGGTATACAGTTGAAGAGCGGCTTGCCATCATAAATGATTTGAAACTCAGTGCTGCCACAGACTCCATTCATGAACAATCGGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGGTGTTGATGTTGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATTCAATTGAAGAGAGGCGTGCTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAGCCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGCCATCATAAACGATTTGAAATTGAGTGCTGCCAGAGACTCCAATCATGAACAACAATCTGATTTGGACAAAGTCAGTAGCATACCTTATGCAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATGGTGCTAGTTTAGATTCCCGCCTGGGCACAATGGAAGAGGATCCTGCTACGAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCATGAACAACAGTCTGAATTAGATGACAGTGGTCGCAGAAAGTTTCTTTCTGAAACAGAGACTGGTGGTTCAGATGCTCCCTCACCTTCCCCCCAGACAAGCCAGTTAGACTGTGGCCTTACAGTGTCCCCTTCCAGTAACGACTCAGTTGATGTTATTTCAGATGCTGATGAAAGCACAAGTGAGTCTCCATCAAGTCCCCTATCCCCAATTGAAGAGGATGACGGTTCTTTGGGTACTTACGAATTGGGTCATTGCTCAGGCAATTTTGAAATGGATAACGTAAATATGACTGTTGTTCTTTATCCGGATTATGTTGTATATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCAGTGCTTTAGCACTGTCTGAAAATGACAAAACTTTGAATTTTGAATGGGGAGTTGATGATCTTGTCAATGTTGAGTGCCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAAGGATGCAGATGGAGATGATGATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAACCCAACTGGTCACAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATATATTGGACCCGGTGCAAATCATGGAAGCGGACGATTCACTTGGCCAGAGGCATCATTTTCCAAATTTCGATGAGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCCGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCTGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCCAGTGTTCCTGGAGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACAAGGAAAGTGGATTTGTTTGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCACACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTCCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTTTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCGACATAAACAAGTTCTCCACCTTTCTTAATGCAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATCGTTATCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAGGCTAAATTTCAGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCTATAGCTTGCCAAGAAAATATATCAACTTCTCAAGCAGACCACGGAATTGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCTGAGTGTGTTAGTGATGCAGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACTGGAGACACTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTTGTGGTATTCAGTGCTCTTCGAAATCTTATGGAGTTGAGACTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAATGGATGTACAAAATTATCCATCATTGGATAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCGGATCGTTGATGGAAGAAGGTTCTCAGGATAATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATGTACAGACCCATCCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAGCACTTCTGTTACTGAAGAAAGTTCTCTGGACCAAAAAAAGGTGCATATTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCAGATATACCTATTCTTGAAGACATTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGCGAGTCACAGGAACCAGAGTCCGAAGAGCAACGAGCTGCAAAAAGGATGAGGCTTACACCTCCAGTTGAAGGGGAAAACTGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1177

Amino Acids

130.05

Weight (kDa)

4.46

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	402 - 520	3e-43	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	575 - 773	1.2e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2184, 2651
Acc65I	GGTACC	1 cut(s)	2038
AccB1I	GGYRCC	2 cut(s)	2038, 2899
AccBSI	CCGCTC	2 cut(s)	280, 3108
AccI	GTMKAC	3 cut(s)	36, 266, 665
AccII	CGCG	2 cut(s)	19, 111
AccIII	TCCGGA	3 cut(s)	64, 1222, 1654
AciI	CCGC	9 cut(s)	14, 17, 19, 109, 280, 832, 1586, 2179, 3108
AclI	AACGTT	3 cut(s)	168, 366, 567
AclWI	GGATC	8 cut(s)	848, 861, 1658, 1671, 1841, 1854, 2496, 3118
AcoI	YGGCCR	1 cut(s)	1600
AcsI	RAATTY	8 cut(s)	80, 124, 905, 1336, 1621, 2450, 2636, 3363
AcuI	CTGAAG	2 cut(s)	2979, 3309
AcvI	CACGTG	1 cut(s)	3063
AfaI	GTAC	8 cut(s)	195, 1153, 1255, 1422, 2040, 3033, 3201, 3412
AfiI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1843, 3313, 3509
AflIII	ACRYGT	2 cut(s)	1885, 3062
AjnI	CCWGG	7 cut(s)	148, 834, 1836, 1861, 1987, 2622, 3007
AleI	CACNNNNGTG	1 cut(s)	3065
AluBI	AGCT	9 cut(s)	1828, 2197, 2254, 2270, 2426, 2470, 2519, 2726, 3476
AluI	AGCT	9 cut(s)	1828, 2197, 2254, 2270, 2426, 2470, 2519, 2726, 3476
Alw21I	GWGCWC	2 cut(s)	2846, 3278
Alw26I	GTCTC	9 cut(s)	714, 968, 1107, 2010, 2090, 2135, 2781, 2861, 3527
AlwI	GGATC	8 cut(s)	848, 861, 1658, 1671, 1841, 1854, 2496, 3118
AlwNI	CAGNNNCTG	2 cut(s)	977, 1082
Aor13HI	TCCGGA	3 cut(s)	64, 1222, 1654
AoxI	GGCC	8 cut(s)	25, 1030, 1600, 2227, 2620, 3010, 3076, 3244
ApeKI	GCWGC	6 cut(s)	314, 512, 713, 890, 1874, 3476
ApoI	RAATTY	8 cut(s)	80, 124, 905, 1336, 1621, 2450, 2636, 3363
AseI	ATTAAT	1 cut(s)	2378
Asp700I	GAANNNNTTC	1 cut(s)	2640
Asp718I	GGTACC	1 cut(s)	2038
AspLEI	GCGC	2 cut(s)	11, 2361
AspS9I	GGNCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
AsuC2I	CCSGG	2 cut(s)	71, 1568
AsuHPI	GGTGA	3 cut(s)	990, 2003, 3107
AsuII	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
AvaII	GGWCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
AxyI	CCTNAGG	1 cut(s)	1779
BaeGI	GKGCMC	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	1602
BamHI	GGATCC	3 cut(s)	853, 1663, 1846
BanI	GGYRCC	2 cut(s)	2038, 2899
BanII	GRGCYC	1 cut(s)	1264
BbrPI	CACGTG	1 cut(s)	3063
BbsI	GAAGAC	1 cut(s)	3393
Bbv12I	GWGCWC	2 cut(s)	2846, 3278
BbvI	GCAGC	6 cut(s)	301, 499, 700, 877, 1861, 3463
BceAI	ACGGC	1 cut(s)	1658
BciT130I	CCWGG	7 cut(s)	150, 836, 1838, 1863, 1989, 2624, 3009
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	71, 1568
BcoDI	GTCTC	9 cut(s)	714, 968, 1107, 2010, 2090, 2135, 2781, 2861, 3527
BfaI	CTAG	5 cut(s)	105, 819, 2001, 2249, 3236
BfmI	CTRYAG	2 cut(s)	2514, 2658
BfuAI	ACCTGC	2 cut(s)	2184, 2651
BisI	GCNGC	9 cut(s)	17, 109, 281, 315, 513, 714, 891, 1875, 3477
BlsI	GCNGC	9 cut(s)	18, 110, 282, 316, 514, 715, 892, 1876, 3478
Bme1390I	CCNGG	9 cut(s)	71, 150, 836, 1568, 1838, 1863, 1989, 2624, 3009
Bme18I	GGWCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
BmgT120I	GGNCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
BmiI	GGNNCC	9 cut(s)	69, 855, 1261, 1566, 1665, 1848, 2040, 2901, 3453
BmrFI	CCNGG	9 cut(s)	71, 150, 836, 1568, 1838, 1863, 1989, 2624, 3009
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	3393
BpmI	CTGGAG	6 cut(s)	508, 1884, 2213, 2778, 2805, 3486
Bpu10I	CCTNAGC	1 cut(s)	1174
Bpu14I	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
BpuEI	CTTGAG	2 cut(s)	2339, 2529
BpuMI	CCSGG	2 cut(s)	71, 1568
BsaAI	YACGTR	1 cut(s)	3063
BsaBI	GATNNNNATC	2 cut(s)	1698, 2439
BsaI	GGTCTC	1 cut(s)	2090
BsaJI	CCNNGG	4 cut(s)	17, 835, 2343, 2554
BsaWI	WCCGGW	3 cut(s)	64, 1222, 1654
BsaXI	ACNNNNNCTCC	2 cut(s)	2291, 2321
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1843, 3313, 3509
Bse21I	CCTNAGG	1 cut(s)	1779
Bse3DI	GCAATG	4 cut(s)	795, 802, 1168, 3412
Bse8I	GATNNNNATC	2 cut(s)	1698, 2439
BseAI	TCCGGA	3 cut(s)	64, 1222, 1654
BseBI	CCWGG	7 cut(s)	150, 836, 1838, 1863, 1989, 2624, 3009
BseDI	CCNNGG	4 cut(s)	17, 835, 2343, 2554
BseJI	GATNNNNATC	2 cut(s)	1698, 2439
BseLI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1843, 3313, 3509
BseMI	GCAATG	4 cut(s)	795, 802, 1168, 3412
BseMII	CTCAG	9 cut(s)	322, 1074, 1188, 1386, 1770, 2034, 2592, 2644, 3146
BseRI	GAGGAG	3 cut(s)	447, 648, 1490
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	6 cut(s)	301, 499, 700, 877, 1861, 3463
BseYI	CCCAGC	1 cut(s)	1263
BsgI	GTGCAG	2 cut(s)	3006, 3122
Bsh1236I	CGCG	2 cut(s)	19, 111
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	8 cut(s)	27, 1032, 1602, 2229, 2622, 3012, 3078, 3246
BshNI	GGYRCC	2 cut(s)	2038, 2899
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	2846, 3278
BsiSI	CCGG	6 cut(s)	65, 71, 87, 1223, 1568, 1655
BslFI	GGGAC	2 cut(s)	1027, 1098
BslI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1843, 3313, 3509
BsmAI	GTCTC	9 cut(s)	714, 968, 1107, 2010, 2090, 2135, 2781, 2861, 3527
BsmFI	GGGAC	2 cut(s)	1027, 1098
BsnI	GGCC	8 cut(s)	27, 1032, 1602, 2229, 2622, 3012, 3078, 3246
Bso31I	GGTCTC	1 cut(s)	2090
Bsp119I	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
Bsp1286I	GDGCHC	4 cut(s)	842, 1264, 2846, 3278
Bsp13I	TCCGGA	3 cut(s)	64, 1222, 1654
Bsp1407I	TGTACA	3 cut(s)	1253, 3031, 3199
BspACI	CCGC	9 cut(s)	14, 17, 19, 109, 280, 832, 1586, 2179, 3108
BspANI	GGCC	8 cut(s)	27, 1032, 1602, 2229, 2622, 3012, 3078, 3246
BspCNI	CTCAG	9 cut(s)	321, 1073, 1187, 1387, 1771, 2033, 2593, 2643, 3145
BspEI	TCCGGA	3 cut(s)	64, 1222, 1654
BspFNI	CGCG	2 cut(s)	19, 111
BspHI	TCATGA	4 cut(s)	331, 730, 916, 1404
BspLI	GGNNCC	9 cut(s)	69, 855, 1261, 1566, 1665, 1848, 2040, 2901, 3453
BspMAI	CTGCAG	1 cut(s)	2662
BspMI	ACCTGC	2 cut(s)	2184, 2651
BspPI	GGATC	8 cut(s)	848, 861, 1658, 1671, 1841, 1854, 2496, 3118
BspQI	GCTCTTC	3 cut(s)	270, 2851, 3459
BspT104I	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
BspT107I	GGYRCC	2 cut(s)	2038, 2899
BspTNI	GGTCTC	1 cut(s)	2090
BsrBI	CCGCTC	2 cut(s)	280, 3108
BsrDI	GCAATG	4 cut(s)	795, 802, 1168, 3412
BsrGI	TGTACA	3 cut(s)	1253, 3031, 3199
BssECI	CCNNGG	4 cut(s)	17, 835, 2343, 2554
BssNAI	GTATAC	2 cut(s)	267, 666
Bst1107I	GTATAC	2 cut(s)	267, 666
Bst2UI	CCWGG	7 cut(s)	150, 836, 1838, 1863, 1989, 2624, 3009
Bst6I	CTCTTC	9 cut(s)	45, 270, 468, 669, 843, 1125, 2112, 2851, 3459
BstAUI	TGTACA	3 cut(s)	1253, 3031, 3199
BstBAI	YACGTR	1 cut(s)	3063
BstBI	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
BstC8I	GCNNGC	8 cut(s)	285, 483, 684, 1830, 2424, 2428, 2521, 2620
BstDSI	CCRYGG	2 cut(s)	17, 2554
BstENI	CCTNNNNNAGG	3 cut(s)	399, 774, 1841
BstFNI	CGCG	2 cut(s)	19, 111
BstHHI	GCGC	2 cut(s)	11, 2361
BstMAI	GTCTC	9 cut(s)	714, 968, 1107, 2010, 2090, 2135, 2781, 2861, 3527
BstMCI	CGRYCG	1 cut(s)	75
BstNI	CCWGG	7 cut(s)	150, 836, 1838, 1863, 1989, 2624, 3009
BstNSI	RCATGY	1 cut(s)	1536
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	9 cut(s)	69, 148, 834, 1566, 1836, 1861, 1987, 2622, 3007
BstSFI	CTRYAG	2 cut(s)	2514, 2658
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	2 cut(s)	19, 111
BstV1I	GCAGC	6 cut(s)	301, 499, 700, 877, 1861, 3463
BstV2I	GAAGAC	1 cut(s)	3393
BstX2I	RGATCY	4 cut(s)	853, 1663, 1846, 2501
BstXI	CCANNNNNNTGG	1 cut(s)	2720
BstYI	RGATCY	4 cut(s)	853, 1663, 1846, 2501
BstZ17I	GTATAC	2 cut(s)	267, 666
Bsu36I	CCTNAGG	1 cut(s)	1779
BsuRI	GGCC	8 cut(s)	27, 1032, 1602, 2229, 2622, 3012, 3078, 3246
BtgI	CCRYGG	2 cut(s)	17, 2554
BtsI	GCAGTG	2 cut(s)	814, 2437
BveI	ACCTGC	2 cut(s)	2184, 2651
Cac8I	GCNNGC	8 cut(s)	285, 483, 684, 1830, 2424, 2428, 2521, 2620
CaiI	CAGNNNCTG	2 cut(s)	977, 1082
CciI	TCATGA	4 cut(s)	331, 730, 916, 1404
CfoI	GCGC	2 cut(s)	11, 2361
Cfr13I	GGNCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
Cfr42I	CCGCGG	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	8 cut(s)	194, 1152, 1254, 1421, 2039, 3032, 3200, 3411
CspCI	CAANNNNNGTGG	2 cut(s)	1890, 1925
CviQI	GTAC	8 cut(s)	194, 1152, 1254, 1421, 2039, 3032, 3200, 3411
EaeI	YGGCCR	1 cut(s)	1600
Eam1104I	CTCTTC	9 cut(s)	45, 270, 468, 669, 843, 1125, 2112, 2851, 3459
EarI	CTCTTC	9 cut(s)	45, 270, 468, 669, 843, 1125, 2112, 2851, 3459
Eco147I	AGGCCT	2 cut(s)	27, 2622
Eco24I	GRGCYC	1 cut(s)	1264
Eco31I	GGTCTC	1 cut(s)	2090
Eco47I	GGWCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
Eco57I	CTGAAG	2 cut(s)	2979, 3309
Eco72I	CACGTG	1 cut(s)	3063
Eco81I	CCTNAGG	1 cut(s)	1779
EcoNI	CCTNNNNNAGG	3 cut(s)	399, 774, 1841
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	7 cut(s)	148, 834, 1836, 1861, 1987, 2622, 3007
EcoT22I	ATGCAT	1 cut(s)	2923
EcoT38I	GRGCYC	1 cut(s)	1264
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	1027, 1098
FauI	CCCGC	1 cut(s)	839
FauNDI	CATATG	1 cut(s)	2218
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	3 cut(s)	36, 266, 665
Fnu4HI	GCNGC	9 cut(s)	17, 109, 281, 315, 513, 714, 891, 1875, 3477
FriOI	GRGCYC	1 cut(s)	1264
Fsp4HI	GCNGC	9 cut(s)	17, 109, 281, 315, 513, 714, 891, 1875, 3477
FspBI	CTAG	5 cut(s)	105, 819, 2001, 2249, 3236
GlaI	GCGC	2 cut(s)	10, 2360
GluI	GCNGC	9 cut(s)	17, 109, 281, 315, 513, 714, 891, 1875, 3477
GsaI	CCCAGC	1 cut(s)	1267
GsuI	CTGGAG	6 cut(s)	508, 1884, 2213, 2778, 2805, 3486
HaeIII	GGCC	8 cut(s)	27, 1032, 1602, 2229, 2622, 3012, 3078, 3246
HapII	CCGG	6 cut(s)	65, 71, 87, 1223, 1568, 1655
HhaI	GCGC	2 cut(s)	11, 2361
Hin6I	GCGC	2 cut(s)	9, 2359
HinP1I	GCGC	2 cut(s)	9, 2359
HincII	GTYRAC	4 cut(s)	220, 418, 619, 1272
HindII	GTYRAC	4 cut(s)	220, 418, 619, 1272
HpaI	GTTAAC	1 cut(s)	1272
HpaII	CCGG	6 cut(s)	65, 71, 87, 1223, 1568, 1655
HphI	GGTGA	3 cut(s)	990, 2003, 3107
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4IV	ACGT	6 cut(s)	168, 366, 567, 1197, 1885, 3062
HpySE526I	ACGT	6 cut(s)	168, 366, 567, 1197, 1885, 3062
HspAI	GCGC	2 cut(s)	9, 2359
Kpn2I	TCCGGA	3 cut(s)	64, 1222, 1654
KpnI	GGTACC	1 cut(s)	2042
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	1272
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	3 cut(s)	270, 2851, 3459
LmnI	GCTCC	5 cut(s)	997, 1259, 2194, 2275, 2723
Lsp1109I	GCAGC	6 cut(s)	301, 499, 700, 877, 1861, 3463
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	5 cut(s)	105, 819, 2001, 2249, 3236
MaeII	ACGT	6 cut(s)	168, 366, 567, 1197, 1885, 3062
MaeIII	GTNAC	7 cut(s)	1052, 1509, 2075, 2574, 3058, 3283, 3444
MbiI	CCGCTC	2 cut(s)	280, 3108
MfeI	CAATTG	3 cut(s)	468, 669, 1125
MflI	RGATCY	4 cut(s)	853, 1663, 1846, 2501
MhlI	GDGCHC	4 cut(s)	842, 1264, 2846, 3278
MlsI	TGGCCA	1 cut(s)	1602
MluNI	TGGCCA	1 cut(s)	1602
MmeI	TCCRAC	4 cut(s)	169, 1906, 1993, 3161
Mox20I	TGGCCA	1 cut(s)	1602
Mph1103I	ATGCAT	1 cut(s)	2923
MroI	TCCGGA	3 cut(s)	64, 1222, 1654
MroXI	GAANNNNTTC	1 cut(s)	2640
MscI	TGGCCA	1 cut(s)	1602
MseI	TTAA	5 cut(s)	1271, 1725, 2034, 2319, 2378
MslI	CAYNNNNRTG	5 cut(s)	807, 1989, 2718, 3065, 3395
Msp20I	TGGCCA	1 cut(s)	1602
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	6 cut(s)	65, 71, 87, 1223, 1568, 1655
MspR9I	CCNGG	9 cut(s)	71, 150, 836, 1568, 1838, 1863, 1989, 2624, 3009
MunI	CAATTG	3 cut(s)	468, 669, 1125
MvaI	CCWGG	7 cut(s)	150, 836, 1838, 1863, 1989, 2624, 3009
MvnI	CGCG	2 cut(s)	19, 111
NciI	CCSGG	2 cut(s)	71, 1568
NdeI	CATATG	1 cut(s)	2218
NlaIV	GGNNCC	9 cut(s)	69, 855, 1261, 1566, 1665, 1848, 2040, 2901, 3453
NmuCI	GTSAC	4 cut(s)	1509, 2075, 3058, 3444
NsiI	ATGCAT	1 cut(s)	2923
NspI	RCATGY	1 cut(s)	1536
NspV	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
OliI	CACNNNNGTG	1 cut(s)	3065
PagI	TCATGA	4 cut(s)	331, 730, 916, 1404
PceI	AGGCCT	2 cut(s)	27, 2622
PciSI	GCTCTTC	3 cut(s)	270, 2851, 3459
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2640
PfeI	GAWTC	4 cut(s)	827, 1592, 1771, 2060
PflFI	GACNNNGTC	2 cut(s)	71, 755
PfoI	TCCNGGA	1 cut(s)	1861
PkrI	GCNGC	9 cut(s)	18, 110, 282, 316, 514, 715, 892, 1876, 3478
PmaCI	CACGTG	1 cut(s)	3063
PmlI	CACGTG	1 cut(s)	3063
Ppu21I	YACGTR	1 cut(s)	3063
PshAI	GACNNNNGTC	1 cut(s)	945
PshBI	ATTAAT	1 cut(s)	2378
Psp1406I	AACGTT	3 cut(s)	168, 366, 567
Psp6I	CCWGG	7 cut(s)	148, 834, 1836, 1861, 1987, 2622, 3007
PspCI	CACGTG	1 cut(s)	3063
PspFI	CCCAGC	1 cut(s)	1263
PspGI	CCWGG	7 cut(s)	148, 834, 1836, 1861, 1987, 2622, 3007
PspN4I	GGNNCC	9 cut(s)	69, 855, 1261, 1566, 1665, 1848, 2040, 2901, 3453
PspPI	GGNCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
PstI	CTGCAG	1 cut(s)	2662
PstNI	CAGNNNCTG	2 cut(s)	977, 1082
PsuI	RGATCY	4 cut(s)	853, 1663, 1846, 2501
PsyI	GACNNNGTC	2 cut(s)	71, 755
RsaI	GTAC	8 cut(s)	195, 1153, 1255, 1422, 2040, 3033, 3201, 3412
RsaNI	GTAC	8 cut(s)	194, 1152, 1254, 1421, 2039, 3032, 3200, 3411
RseI	CAYNNNNRTG	5 cut(s)	807, 1989, 2718, 3065, 3395
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	3 cut(s)	270, 2851, 3459
SaqAI	TTAA	5 cut(s)	1271, 1725, 2034, 2319, 2378
SatI	GCNGC	9 cut(s)	17, 109, 281, 315, 513, 714, 891, 1875, 3477
Sau96I	GGNCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
ScrFI	CCNGG	9 cut(s)	71, 150, 836, 1568, 1838, 1863, 1989, 2624, 3009
SduI	GDGCHC	4 cut(s)	842, 1264, 2846, 3278
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	2514, 2658
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	7 cut(s)	128, 155, 353, 554, 1822, 2691, 2849
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
SmiMI	CAYNNNNRTG	5 cut(s)	807, 1989, 2718, 3065, 3395
SmlI	CTYRAG	2 cut(s)	2354, 2544
SmoI	CTYRAG	2 cut(s)	2354, 2544
SseBI	AGGCCT	2 cut(s)	27, 2622
SsiI	CCGC	9 cut(s)	14, 17, 19, 109, 280, 832, 1586, 2179, 3108
SspI	AATATT	1 cut(s)	1550
SspMI	CTAG	5 cut(s)	105, 819, 2001, 2249, 3236
StuI	AGGCCT	2 cut(s)	27, 2622
StyD4I	CCNGG	9 cut(s)	69, 148, 834, 1566, 1836, 1861, 1987, 2622, 3007
TaiI	ACGT	6 cut(s)	171, 369, 570, 1200, 1888, 3065
TaqII	GACCGA	1 cut(s)	2946
TatI	WGTACW	4 cut(s)	1253, 1420, 3031, 3199
TauI	GCSGC	3 cut(s)	19, 111, 283
TfiI	GAWTC	4 cut(s)	827, 1592, 1771, 2060
Tru1I	TTAA	5 cut(s)	1271, 1725, 2034, 2319, 2378
Tru9I	TTAA	5 cut(s)	1271, 1725, 2034, 2319, 2378
TseFI	GTSAC	4 cut(s)	1509, 2075, 3058, 3444
TseI	GCWGC	6 cut(s)	314, 512, 713, 890, 1874, 3476
Tsp45I	GTSAC	4 cut(s)	1509, 2075, 3058, 3444
TspGWI	ACGGA	3 cut(s)	1406, 2571, 3171
Tth111I	GACNNNGTC	2 cut(s)	71, 755
VpaK11BI	GGWCC	7 cut(s)	67, 115, 793, 1564, 3005, 3173, 3304
VspI	ATTAAT	1 cut(s)	2378
XagI	CCTNNNNNAGG	3 cut(s)	399, 774, 1841
XapI	RAATTY	8 cut(s)	80, 124, 905, 1336, 1621, 2450, 2636, 3363
XbaI	TCTAGA	1 cut(s)	2248
XceI	RCATGY	1 cut(s)	1536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmiI	GTMKAC	3 cut(s)	36, 266, 665
XmnI	GAANNNNTTC	1 cut(s)	2640
XspI	CTAG	5 cut(s)	105, 819, 2001, 2249, 3236
Zsp2I	ATGCAT	1 cut(s)	2923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.