Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Forward (+)

8117371 .. 8130756

Gene Structure 13386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

ATGAAGAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTTCCGGACCCGGTCGTCAAATTTTCCGGCAAACTCAAAAACCCTAGCCGCGAGGACCATCGGAATTCGAAGGACGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTGAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGGTGTTGATGAAGTTGACACTGATCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGCTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAGTCAGGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCCTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCAGTATACAATTGAAGAGAGGCTTGCTATCATAAATGATTTGAAATCGAGTGCTGCCACAGACTCCAGTCATGAACAACAATCTGATTTGGACAAAGTCAGTAGCATACCTTATGCAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATAGTGCTAGTTTAGATTCCCGCCCGGGCACAATGGAAGAGGATCCGGCTACAAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCACGAACAGCAGTCTGAATTAGATGACAATGGACGCAGAAAGTTTCTTTCTGAAACAGAGACTGGCGGTTCAGATGCTCCCTCACCTTCCCCCCAGACAAGCCAGTTAGACTGTGGCCTTACAGTCTCCCCTTGCAGTAACGACCCAGTTGATGTTATTTCAGATGCTGATGAAAGCACAAGTGAGTCTCCATCAAGTCCCCTATCCCCAATTGAAGAGGATGACGGTTCTTTGGGTACTTATGAATTGGGTCATTGCTCGGGCAATTTTGAAATGGATAACATAAATATGACGGTTGTTCTTTATCCGGATTATGTTGTATATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCAGTGGTTTAGCACCGTCTGAAAACGACAAAACTTTGAATTTTGAATGGGGAGTTGATGATCTTGTCAATGTTGAGTGTCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAAGGATGCAGATGGAGATGATGATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAACCCAACTGGTCTCAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATGTATTGGAACCGGTGCAAATTTTCGACGAGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCCGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCCGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCCAGTGTTCCTGGTGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACAAGGAAAGTGGATTTGTTTGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGGTAAGATATCTGTGAATGGACCTATGCACATAGATTCTACATTAGTCTTCCCATCATTTATGTGCTTTTGTCATGTTTCAGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCATACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTTCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTGTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCGACATAAACAAGTTCTCCACCTTTCTTAATGCAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATTGTTATCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAGGCTAAATATCAGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCTATAGCTTGCCAAGAAAATATATCAACTTCTCAAGCAGACCACGGAATCGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCTGAGTGTGTTAGTGATGCAGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACGGGAGACACTGGCTTTCAAGAGATGCCTGCAATCACATCTCAAACTTGTGGTATTCAATGCTCTTCGAAATCTTATGGAGTTGAGACTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAATGGATGTACAAAATTATCCATCATTGGACAGTGTCACATGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCGGAACCTTGATTGAAGAAGGTTCTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGTATGTACAGACCCATTCATCAACAGAGGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAGCACTTCTGTTACTGAAGAAAGTTCTCTGGACCAAAAGAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATATACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGCGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGAAGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1122

Amino Acids

124.03

Weight (kDa)

4.45

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	336 - 454	2.4e-43	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	494 - 719	7.3e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc36I	ACCTGC	2 cut(s)	2022, 2489
Acc65I	GGTACC	1 cut(s)	1876
AccB1I	GGYRCC	2 cut(s)	1876, 2737
AccBSI	CCGCTC	1 cut(s)	2946
AccI	GTMKAC	3 cut(s)	36, 266, 467
AccII	CGCG	2 cut(s)	19, 111
AccIII	TCCGGA	3 cut(s)	64, 1024, 1411
AciI	CCGC	8 cut(s)	14, 17, 19, 109, 634, 783, 2017, 2946
AclI	AACGTT	2 cut(s)	168, 369
AclWI	GGATC	8 cut(s)	650, 663, 1415, 1428, 1598, 1611, 2334, 2982
AcsI	RAATTY	7 cut(s)	80, 124, 707, 1138, 1377, 2474, 3201
AcuI	CTGAAG	3 cut(s)	2817, 3147, 3321
AfaI	GTAC	7 cut(s)	955, 1057, 1224, 1878, 2871, 3039, 3250
AfiI	CCNNNNNNNGG	6 cut(s)	23, 203, 578, 1600, 3151, 3347
AflIII	ACRYGT	2 cut(s)	1642, 2900
AgeI	ACCGGT	1 cut(s)	1369
AjnI	CCWGG	6 cut(s)	148, 1593, 1618, 1744, 2460, 2845
AleI	CACNNNNGTG	1 cut(s)	2903
AluBI	AGCT	9 cut(s)	1585, 2035, 2092, 2108, 2264, 2308, 2357, 2564, 3314
AluI	AGCT	9 cut(s)	1585, 2035, 2092, 2108, 2264, 2308, 2357, 2564, 3314
Alw21I	GWGCWC	1 cut(s)	3116
AlwI	GGATC	8 cut(s)	650, 663, 1415, 1428, 1598, 1611, 2334, 2982
AlwNI	CAGNNNCTG	3 cut(s)	779, 884, 3299
Ama87I	CYCGRG	3 cut(s)	637, 976, 1535
Aor13HI	TCCGGA	3 cut(s)	64, 1024, 1411
AoxI	GGCC	7 cut(s)	25, 832, 2065, 2458, 2848, 2914, 3082
ApeKI	GCWGC	5 cut(s)	314, 515, 692, 1631, 3314
ApoI	RAATTY	7 cut(s)	80, 124, 707, 1138, 1377, 2474, 3201
ArsI	GACNNNNNNTTYG	2 cut(s)	1376, 1408
AseI	ATTAAT	1 cut(s)	2216
AsiGI	ACCGGT	1 cut(s)	1369
Asp700I	GAANNNNTTC	1 cut(s)	2478
Asp718I	GGTACC	1 cut(s)	1876
AspLEI	GCGC	2 cut(s)	11, 2199
AspS9I	GGNCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
AsuC2I	CCSGG	3 cut(s)	71, 638, 639
AsuHPI	GGTGA	3 cut(s)	792, 1760, 2945
AsuII	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
AvaI	CYCGRG	3 cut(s)	637, 976, 1535
AvaII	GGWCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
BaeGI	GKGCMC	1 cut(s)	644
BamHI	GGATCC	3 cut(s)	655, 1420, 1603
BanI	GGYRCC	2 cut(s)	1876, 2737
BanII	GRGCYC	1 cut(s)	1066
BbsI	GAAGAC	2 cut(s)	1807, 3231
Bbv12I	GWGCWC	1 cut(s)	3116
BbvI	GCAGC	5 cut(s)	301, 502, 679, 1618, 3301
BceAI	ACGGC	1 cut(s)	1415
BciT130I	CCWGG	6 cut(s)	150, 1595, 1620, 1746, 2462, 2847
BclI	TGATCA	2 cut(s)	226, 601
BcnI	CCSGG	3 cut(s)	71, 638, 639
BfaI	CTAG	5 cut(s)	105, 621, 1758, 2087, 3074
BfmI	CTRYAG	2 cut(s)	2352, 2496
BfuAI	ACCTGC	2 cut(s)	2022, 2489
BisI	GCNGC	7 cut(s)	17, 109, 315, 516, 693, 1632, 3315
BlsI	GCNGC	7 cut(s)	18, 110, 316, 517, 694, 1633, 3316
Bme1390I	CCNGG	9 cut(s)	71, 150, 638, 639, 1595, 1620, 1746, 2462, 2847
Bme18I	GGWCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
BmeT110I	CYCGRG	3 cut(s)	637, 976, 1535
BmgT120I	GGNCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
BmrFI	CCNGG	9 cut(s)	71, 150, 638, 639, 1595, 1620, 1746, 2462, 2847
BmrI	ACTGGG	1 cut(s)	857
BmuI	ACTGGG	1 cut(s)	857
BoxI	GACNNNNGTC	2 cut(s)	327, 528
BpiI	GAAGAC	2 cut(s)	1807, 3231
BpmI	CTGGAG	5 cut(s)	310, 511, 2051, 2616, 3324
Bpu14I	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
BpuEI	CTTGAG	2 cut(s)	2177, 2367
BpuMI	CCSGG	3 cut(s)	71, 638, 639
BsaBI	GATNNNNATC	2 cut(s)	1455, 2277
BsaI	GGTCTC	2 cut(s)	1317, 1928
BsaJI	CCNNGG	5 cut(s)	17, 637, 1536, 2181, 2392
BsaWI	WCCGGW	4 cut(s)	64, 1024, 1369, 1411
BsaXI	ACNNNNNCTCC	4 cut(s)	2129, 2159, 3281, 3311
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 203, 578, 1600, 3151, 3347
Bse118I	RCCGGY	1 cut(s)	1369
Bse3DI	GCAATG	4 cut(s)	597, 604, 970, 3250
Bse8I	GATNNNNATC	2 cut(s)	1455, 2277
BseAI	TCCGGA	3 cut(s)	64, 1024, 1411
BseBI	CCWGG	6 cut(s)	150, 1595, 1620, 1746, 2462, 2847
BseDI	CCNNGG	5 cut(s)	17, 637, 1536, 2181, 2392
BseJI	GATNNNNATC	2 cut(s)	1455, 2277
BseLI	CCNNNNNNNGG	6 cut(s)	23, 203, 578, 1600, 3151, 3347
BseMI	GCAATG	4 cut(s)	597, 604, 970, 3250
BseMII	CTCAG	7 cut(s)	476, 1188, 1328, 1872, 2430, 2482, 2984
BseRI	GAGGAG	3 cut(s)	249, 450, 1292
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	5 cut(s)	301, 502, 679, 1618, 3301
BseYI	CCCAGC	1 cut(s)	1065
BsgI	GTGCAG	2 cut(s)	2844, 2960
Bsh1236I	CGCG	2 cut(s)	19, 111
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 834, 2067, 2460, 2850, 2916, 3084
BshNI	GGYRCC	2 cut(s)	1876, 2737
BshTI	ACCGGT	1 cut(s)	1369
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	3116
BsiHKCI	CYCGRG	3 cut(s)	637, 976, 1535
BsiSI	CCGG	8 cut(s)	65, 71, 87, 638, 659, 1025, 1370, 1412
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	6 cut(s)	23, 203, 578, 1600, 3151, 3347
BsmFI	GGGAC	1 cut(s)	900
BsnI	GGCC	7 cut(s)	27, 834, 2067, 2460, 2850, 2916, 3084
Bso31I	GGTCTC	2 cut(s)	1317, 1928
BsoBI	CYCGRG	3 cut(s)	637, 976, 1535
Bsp119I	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
Bsp1286I	GDGCHC	3 cut(s)	644, 1066, 3116
Bsp13I	TCCGGA	3 cut(s)	64, 1024, 1411
Bsp1407I	TGTACA	3 cut(s)	1055, 2869, 3037
BspACI	CCGC	8 cut(s)	14, 17, 19, 109, 634, 783, 2017, 2946
BspANI	GGCC	7 cut(s)	27, 834, 2067, 2460, 2850, 2916, 3084
BspCNI	CTCAG	7 cut(s)	475, 1189, 1327, 1871, 2431, 2481, 2983
BspEI	TCCGGA	3 cut(s)	64, 1024, 1411
BspFNI	CGCG	2 cut(s)	19, 111
BspHI	TCATGA	3 cut(s)	532, 1206, 2977
BspMAI	CTGCAG	1 cut(s)	2500
BspMI	ACCTGC	2 cut(s)	2022, 2489
BspPI	GGATC	8 cut(s)	650, 663, 1415, 1428, 1598, 1611, 2334, 2982
BspQI	GCTCTTC	2 cut(s)	2689, 3297
BspT104I	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
BspT107I	GGYRCC	2 cut(s)	1876, 2737
BspTNI	GGTCTC	2 cut(s)	1317, 1928
BsrBI	CCGCTC	1 cut(s)	2946
BsrDI	GCAATG	4 cut(s)	597, 604, 970, 3250
BsrFI	RCCGGY	1 cut(s)	1369
BsrGI	TGTACA	3 cut(s)	1055, 2869, 3037
BssAI	RCCGGY	1 cut(s)	1369
BssECI	CCNNGG	5 cut(s)	17, 637, 1536, 2181, 2392
BssNAI	GTATAC	2 cut(s)	267, 468
Bst1107I	GTATAC	2 cut(s)	267, 468
Bst2UI	CCWGG	6 cut(s)	150, 1595, 1620, 1746, 2462, 2847
Bst6I	CTCTTC	8 cut(s)	45, 270, 471, 645, 927, 1950, 2689, 3297
BstAUI	TGTACA	3 cut(s)	1055, 2869, 3037
BstBI	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
BstC8I	GCNNGC	8 cut(s)	285, 486, 1587, 2262, 2266, 2359, 2458, 2649
BstDEI	CTNAG	8 cut(s)	462, 1197, 1314, 1858, 2429, 2439, 2468, 2970
BstDSI	CCRYGG	2 cut(s)	17, 2392
BstENI	CCTNNNNNAGG	3 cut(s)	201, 576, 1598
BstFNI	CGCG	2 cut(s)	19, 111
BstHHI	GCGC	2 cut(s)	11, 2199
BstMCI	CGRYCG	1 cut(s)	75
BstNI	CCWGG	6 cut(s)	150, 1595, 1620, 1746, 2462, 2847
BstNSI	RCATGY	3 cut(s)	1338, 2904, 3161
BstPAI	GACNNNNGTC	2 cut(s)	327, 528
BstSCI	CCNGG	9 cut(s)	69, 148, 636, 637, 1593, 1618, 1744, 2460, 2845
BstSFI	CTRYAG	2 cut(s)	2352, 2496
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	2 cut(s)	19, 111
BstV1I	GCAGC	5 cut(s)	301, 502, 679, 1618, 3301
BstV2I	GAAGAC	2 cut(s)	1807, 3231
BstX2I	RGATCY	4 cut(s)	655, 1420, 1603, 2339
BstXI	CCANNNNNNTGG	1 cut(s)	2558
BstYI	RGATCY	4 cut(s)	655, 1420, 1603, 2339
BstZ17I	GTATAC	2 cut(s)	267, 468
BsuRI	GGCC	7 cut(s)	27, 834, 2067, 2460, 2850, 2916, 3084
BtgI	CCRYGG	2 cut(s)	17, 2392
BtsI	GCAGTG	2 cut(s)	616, 2275
BveI	ACCTGC	2 cut(s)	2022, 2489
Cac8I	GCNNGC	8 cut(s)	285, 486, 1587, 2262, 2266, 2359, 2458, 2649
CaiI	CAGNNNCTG	3 cut(s)	779, 884, 3299
CciI	TCATGA	3 cut(s)	532, 1206, 2977
CfoI	GCGC	2 cut(s)	11, 2199
Cfr10I	RCCGGY	1 cut(s)	1369
Cfr13I	GGNCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
Cfr42I	CCGCGG	1 cut(s)	20
Cfr9I	CCCGGG	1 cut(s)	637
CseI	GACGC	1 cut(s)	759
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	7 cut(s)	954, 1056, 1223, 1877, 2870, 3038, 3249
CspAI	ACCGGT	1 cut(s)	1369
CspCI	CAANNNNNGTGG	4 cut(s)	1084, 1119, 1647, 1682
CviQI	GTAC	7 cut(s)	954, 1056, 1223, 1877, 2870, 3038, 3249
DdeI	CTNAG	8 cut(s)	462, 1197, 1314, 1858, 2429, 2439, 2468, 2970
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	8 cut(s)	45, 270, 471, 645, 927, 1950, 2689, 3297
EarI	CTCTTC	8 cut(s)	45, 270, 471, 645, 927, 1950, 2689, 3297
Eco147I	AGGCCT	2 cut(s)	27, 2460
Eco24I	GRGCYC	1 cut(s)	1066
Eco31I	GGTCTC	2 cut(s)	1317, 1928
Eco32I	GATATC	1 cut(s)	1776
Eco47I	GGWCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
Eco57I	CTGAAG	3 cut(s)	2817, 3147, 3321
Eco88I	CYCGRG	3 cut(s)	637, 976, 1535
EcoNI	CCTNNNNNAGG	3 cut(s)	201, 576, 1598
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	6 cut(s)	148, 1593, 1618, 1744, 2460, 2845
EcoRV	GATATC	1 cut(s)	1776
EcoT22I	ATGCAT	1 cut(s)	2761
EcoT38I	GRGCYC	1 cut(s)	1066
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	900
FauI	CCCGC	1 cut(s)	641
FauNDI	CATATG	1 cut(s)	2056
FbaI	TGATCA	2 cut(s)	226, 601
FblI	GTMKAC	3 cut(s)	36, 266, 467
Fnu4HI	GCNGC	7 cut(s)	17, 109, 315, 516, 693, 1632, 3315
FriOI	GRGCYC	1 cut(s)	1066
Fsp4HI	GCNGC	7 cut(s)	17, 109, 315, 516, 693, 1632, 3315
FspBI	CTAG	5 cut(s)	105, 621, 1758, 2087, 3074
GlaI	GCGC	2 cut(s)	10, 2198
GluI	GCNGC	7 cut(s)	17, 109, 315, 516, 693, 1632, 3315
GsaI	CCCAGC	1 cut(s)	1069
GsuI	CTGGAG	5 cut(s)	310, 511, 2051, 2616, 3324
HaeIII	GGCC	7 cut(s)	27, 834, 2067, 2460, 2850, 2916, 3084
HapII	CCGG	8 cut(s)	65, 71, 87, 638, 659, 1025, 1370, 1412
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	2 cut(s)	11, 2199
Hin6I	GCGC	2 cut(s)	9, 2197
HinP1I	GCGC	2 cut(s)	9, 2197
HincII	GTYRAC	4 cut(s)	220, 421, 1074, 3232
HindII	GTYRAC	4 cut(s)	220, 421, 1074, 3232
HpaI	GTTAAC	1 cut(s)	1074
HpaII	CCGG	8 cut(s)	65, 71, 87, 638, 659, 1025, 1370, 1412
HphI	GGTGA	3 cut(s)	792, 1760, 2945
Hpy99I	CGWCG	2 cut(s)	50, 1388
HpyCH4IV	ACGT	4 cut(s)	168, 369, 1642, 3228
HpyF3I	CTNAG	8 cut(s)	462, 1197, 1314, 1858, 2429, 2439, 2468, 2970
HpySE526I	ACGT	4 cut(s)	168, 369, 1642, 3228
HspAI	GCGC	2 cut(s)	9, 2197
Kpn2I	TCCGGA	3 cut(s)	64, 1024, 1411
KpnI	GGTACC	1 cut(s)	1880
Ksp22I	TGATCA	2 cut(s)	226, 601
KspAI	GTTAAC	1 cut(s)	1074
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	2689, 3297
LmnI	GCTCC	6 cut(s)	799, 1061, 2032, 2113, 2561, 3289
Lsp1109I	GCAGC	5 cut(s)	301, 502, 679, 1618, 3301
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	5 cut(s)	105, 621, 1758, 2087, 3074
MaeII	ACGT	4 cut(s)	168, 369, 1642, 3228
MaeIII	GTNAC	6 cut(s)	716, 854, 2412, 2896, 3121, 3282
MbiI	CCGCTC	1 cut(s)	2946
MfeI	CAATTG	3 cut(s)	270, 471, 927
MflI	RGATCY	4 cut(s)	655, 1420, 1603, 2339
MhlI	GDGCHC	3 cut(s)	644, 1066, 3116
MlyI	GAGTC	9 cut(s)	317, 518, 724, 911, 1717, 1850, 2401, 3290, 3305
MmeI	TCCRAC	5 cut(s)	169, 1663, 1831, 2999, 3142
Mph1103I	ATGCAT	1 cut(s)	2761
MroI	TCCGGA	3 cut(s)	64, 1024, 1411
MroXI	GAANNNNTTC	1 cut(s)	2478
MseI	TTAA	5 cut(s)	1073, 1482, 1872, 2157, 2216
MslI	CAYNNNNRTG	6 cut(s)	609, 1004, 1746, 1828, 2556, 2903
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	8 cut(s)	65, 71, 87, 638, 659, 1025, 1370, 1412
MspR9I	CCNGG	9 cut(s)	71, 150, 638, 639, 1595, 1620, 1746, 2462, 2847
MunI	CAATTG	3 cut(s)	270, 471, 927
MvaI	CCWGG	6 cut(s)	150, 1595, 1620, 1746, 2462, 2847
MvnI	CGCG	2 cut(s)	19, 111
NciI	CCSGG	3 cut(s)	71, 638, 639
NdeI	CATATG	1 cut(s)	2056
NmuCI	GTSAC	3 cut(s)	716, 2896, 3282
NsiI	ATGCAT	1 cut(s)	2761
NspI	RCATGY	3 cut(s)	1338, 2904, 3161
NspV	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
OliI	CACNNNNGTG	1 cut(s)	2903
PagI	TCATGA	3 cut(s)	532, 1206, 2977
PceI	AGGCCT	2 cut(s)	27, 2460
PciI	ACATGT	1 cut(s)	2900
PciSI	GCTCTTC	2 cut(s)	2689, 3297
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2478
PfeI	GAWTC	5 cut(s)	629, 1528, 1802, 1898, 2397
PflFI	GACNNNGTC	3 cut(s)	71, 557, 2894
PinAI	ACCGGT	1 cut(s)	1369
PkrI	GCNGC	7 cut(s)	18, 110, 316, 517, 694, 1633, 3316
PleI	GAGTC	9 cut(s)	317, 518, 723, 910, 1717, 1850, 2401, 3289, 3304
PpsI	GAGTC	9 cut(s)	317, 518, 723, 910, 1717, 1850, 2401, 3289, 3304
PscI	ACATGT	1 cut(s)	2900
PshAI	GACNNNNGTC	2 cut(s)	327, 528
PshBI	ATTAAT	1 cut(s)	2216
Psp1406I	AACGTT	2 cut(s)	168, 369
Psp6I	CCWGG	6 cut(s)	148, 1593, 1618, 1744, 2460, 2845
PspFI	CCCAGC	1 cut(s)	1065
PspGI	CCWGG	6 cut(s)	148, 1593, 1618, 1744, 2460, 2845
PspPI	GGNCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
PstI	CTGCAG	1 cut(s)	2500
PstNI	CAGNNNCTG	3 cut(s)	779, 884, 3299
PsuI	RGATCY	4 cut(s)	655, 1420, 1603, 2339
PsyI	GACNNNGTC	3 cut(s)	71, 557, 2894
RsaI	GTAC	7 cut(s)	955, 1057, 1224, 1878, 2871, 3039, 3250
RsaNI	GTAC	7 cut(s)	954, 1056, 1223, 1877, 2870, 3038, 3249
RseI	CAYNNNNRTG	6 cut(s)	609, 1004, 1746, 1828, 2556, 2903
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	2689, 3297
SaqAI	TTAA	5 cut(s)	1073, 1482, 1872, 2157, 2216
SatI	GCNGC	7 cut(s)	17, 109, 315, 516, 693, 1632, 3315
Sau96I	GGNCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
SchI	GAGTC	9 cut(s)	317, 518, 724, 911, 1717, 1850, 2401, 3290, 3305
ScrFI	CCNGG	9 cut(s)	71, 150, 638, 639, 1595, 1620, 1746, 2462, 2847
SduI	GDGCHC	3 cut(s)	644, 1066, 3116
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	2352, 2496
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	6 cut(s)	128, 155, 356, 1579, 2529, 2687
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
SmaI	CCCGGG	1 cut(s)	639
SmiMI	CAYNNNNRTG	6 cut(s)	609, 1004, 1746, 1828, 2556, 2903
SmlI	CTYRAG	2 cut(s)	2192, 2382
SmoI	CTYRAG	2 cut(s)	2192, 2382
SrfI	GCCCGGGC	1 cut(s)	639
SseBI	AGGCCT	2 cut(s)	27, 2460
SsiI	CCGC	8 cut(s)	14, 17, 19, 109, 634, 783, 2017, 2946
SspI	AATATT	1 cut(s)	1352
SspMI	CTAG	5 cut(s)	105, 621, 1758, 2087, 3074
StuI	AGGCCT	2 cut(s)	27, 2460
StyD4I	CCNGG	9 cut(s)	69, 148, 636, 637, 1593, 1618, 1744, 2460, 2845
TaiI	ACGT	4 cut(s)	171, 372, 1645, 3231
TaqII	GACCGA	1 cut(s)	2784
TatI	WGTACW	4 cut(s)	1055, 1222, 2869, 3037
TauI	GCSGC	2 cut(s)	19, 111
TfiI	GAWTC	5 cut(s)	629, 1528, 1802, 1898, 2397
Tru1I	TTAA	5 cut(s)	1073, 1482, 1872, 2157, 2216
Tru9I	TTAA	5 cut(s)	1073, 1482, 1872, 2157, 2216
TseFI	GTSAC	3 cut(s)	716, 2896, 3282
TseI	GCWGC	5 cut(s)	314, 515, 692, 1631, 3314
Tsp45I	GTSAC	3 cut(s)	716, 2896, 3282
TspGWI	ACGGA	3 cut(s)	1208, 2409, 3009
TspMI	CCCGGG	1 cut(s)	637
Tth111I	GACNNNGTC	3 cut(s)	71, 557, 2894
VpaK11BI	GGWCC	7 cut(s)	67, 115, 595, 1787, 2843, 3011, 3142
VspI	ATTAAT	1 cut(s)	2216
XagI	CCTNNNNNAGG	3 cut(s)	201, 576, 1598
XapI	RAATTY	7 cut(s)	80, 124, 707, 1138, 1377, 2474, 3201
XbaI	TCTAGA	1 cut(s)	2086
XceI	RCATGY	3 cut(s)	1338, 2904, 3161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XmaI	CCCGGG	1 cut(s)	637
XmiI	GTMKAC	3 cut(s)	36, 266, 467
XmnI	GAANNNNTTC	1 cut(s)	2478
XspI	CTAG	5 cut(s)	105, 621, 1758, 2087, 3074
Zsp2I	ATGCAT	1 cut(s)	2761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.