Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

17173162 .. 17178255

Gene Structure 5094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGGATTCTATCAAAGGAAGTCATACGGGTCTGAAAAATCTAATTCAAAGTTATCTGTGGGAAGAGTGGAAAGAAAGGAAAAAGGAGACATCTGAAGAAATCTCATCAAAGTTTCACAACCTGCGATTTGTCTCACTTGAGCTACCGCAACAGGAAAATTCGTTCGATTGTGGCCTGTTTTTACTCCACTATTTGGAGCTCTTTTTGGCAGAAGCTCCTGTTCATTTCAGCCCTTTCAAAATAACCAAGTTTTCCAACTTTCTTAACGCAAATTGGTTTCTTCCGTCCGAGGCGTCTCTCAAGCGTACCCTTATTCAAAGGTTAATTTTTAAGCTACTTGAAGATCGTTGTCGAGGAGTCTCTTCAGCAGCTTCCAGTGATGAAGACCAGGCTAAGTTTCCAGAATGTAACAAGCATGAAACTGGTGTGCAGTCTTTTTCAGGAAGATGTGGTCCTGCTGTAGCTTGCCAAGAAAATATGTCAAGTTCTCAAGCAGGCCAGGGAATTGAAATTACTCTATTATCCTCGTCTTCTCTAAGGAGTTCTGAGTGTGTTAATGATGCAGGCTTGGTTCTCCAGGAACTTTTGGAGCCAGGAGCCACCTCCGGCTCACTCTTTGGAGAATATCAATCATTTGACCAAAAATCATCTTTTTACCGTCTTAATGGAGCCATATCACTGATGGAGGATGACACCAAAACTGGAGAGCAGTTCGCTTTTTTGCCTACAGGAGACTCTGGTTTTCAGCAAATAACTGGAATTACATCTCAAACTTGTGACATTGAGCATGCATCAAGAGCTTATGGCGTTGAGACTGACTTTAACTTGGCGCAAGTGGAAAATGGAAACACTGATTCATCCCCTAAACTATCAATGTGTGTCTCTGACCAATCTGAATATATAGCGGTCATTGAGAACCATCCAGTTGGGGAAGGTTTGGGTTCGAGTCAGAAAGAAGAAATGGATGTAAGCCATTCTCATTCTGTGGAAAACGTCACATGTTTAATAGATGTCCTTGTTTCTGCTCCAAGCAAGATACAGGATGCTTCCGTTATAGAATTAGAAGGTTCTCAAGATCATGTGCATGACGGGAATGAAAATGGAGATTCTCAAGACCATGATGCTTTCCATGATGGCAACGGAAGTTGTCAAGACCATTGTAAGGTGCATGATGGCAACAAAAATGGAGGTTCTGAAGACCATGGTAAGGTGCATGATGGCAAAAATGGAGTTTCCCAAGACCATGATATAGTGCTGGATGCCAACGAAAATAGAGGTTCTCAAGACCATGATAGATTGCATCATGGCAACAAAACTGCTGGTTTTCAAGACCATGATAAGGTGCATGATGTCAACGTAAATGGAGCTTCTCAAGACCATGATAAGGTGCAGGATGGCAACAAAATTGGAGGCTCTCAAGACCATGATAAGGTGCTTGATGGCTACGAAAATGGAGCTTCTCAAGACCATGATGAGGTGCAGGATGGCAACGAAAATGGAGGCGTTCAGGACCATGATAAAGTGCAAGATGGCAACAGAAATGGAGCTTCTGAACACCACGGTACGGTGCAGGAAGTGGCTCCAATTCCCTCGTGCCAAGAAAATCCTGATGTACAAATGGATCAAGACTCCGATATGGTGGACAACAGGACTGTCTCATGTGATGATGATGTTCAAATTTCCGATGGACCAACGCCTGACGATGGTCTGATGCCCGAGTCGCTAGAGCAACGCGCTGCAAAAAGGCTGCGGCTTACACCTCCAGTTGAAGGGGATAAATGTGTCACAAGAAGCCTTGTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

603

Amino Acids

65.88

Weight (kDa)

4.62

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	1 - 84	3.3e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	1 cut(s)	1734
AciI	CCGC	3 cut(s)	146, 905, 1750
AclWI	GGATC	1 cut(s)	1629
AcsI	RAATTY	2 cut(s)	157, 1677
AcuI	CTGAAG	3 cut(s)	114, 348, 1215
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	307, 1564, 1614
AflIII	ACRYGT	1 cut(s)	998
AgsI	TTSAA	9 cut(s)	47, 238, 317, 341, 509, 1328, 1676, 1769, 1802
AjnI	CCWGG	4 cut(s)	387, 498, 576, 592
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	8 cut(s)	80, 136, 300, 364, 726, 806, 886, 1660
AlwI	GGATC	1 cut(s)	1629
Ama87I	CYCGRG	1 cut(s)	1715
AoxI	GGCC	2 cut(s)	172, 496
ApeKI	GCWGC	3 cut(s)	368, 1736, 1747
ApoI	RAATTY	2 cut(s)	157, 1677
AspLEI	GCGC	2 cut(s)	832, 1736
AspS9I	GGNCC	3 cut(s)	452, 1510, 1688
AvaI	CYCGRG	1 cut(s)	1715
AvaII	GGWCC	3 cut(s)	452, 1510, 1688
BanII	GRGCYC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	1591
BbsI	GAAGAC	3 cut(s)	390, 522, 1203
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	380, 1723, 1734
BciT130I	CCWGG	4 cut(s)	389, 500, 578, 594
BcoDI	GTCTC	8 cut(s)	80, 136, 300, 364, 726, 806, 886, 1660
BfaI	CTAG	1 cut(s)	1724
BfmI	CTRYAG	2 cut(s)	459, 726
BfuAI	ACCTGC	1 cut(s)	129
BisI	GCNGC	4 cut(s)	369, 1737, 1748, 1751
BlsI	GCNGC	4 cut(s)	370, 1738, 1749, 1752
Bme1390I	CCNGG	4 cut(s)	389, 500, 578, 594
Bme18I	GGWCC	3 cut(s)	452, 1510, 1688
BmeT110I	CYCGRG	1 cut(s)	1715
BmgT120I	GGNCC	3 cut(s)	452, 1510, 1688
BmiI	GGNNCC	4 cut(s)	591, 598, 670, 1581
BmrFI	CCNGG	4 cut(s)	389, 500, 578, 594
BmsI	GCATC	7 cut(s)	550, 800, 1033, 1111, 1249, 1309, 1701
BoxI	GACNNNNGTC	1 cut(s)	1704
BpiI	GAAGAC	3 cut(s)	390, 522, 1203
BpmI	CTGGAG	3 cut(s)	560, 723, 1746
BpuEI	CTTGAG	9 cut(s)	158, 284, 474, 1056, 1095, 1266, 1356, 1401, 1446
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	4 cut(s)	288, 499, 1201, 1558
Bse1I	ACTGG	6 cut(s)	375, 427, 706, 760, 923, 1763
BseBI	CCWGG	4 cut(s)	389, 500, 578, 594
BseDI	CCNNGG	4 cut(s)	288, 499, 1201, 1558
BseGI	GGATG	8 cut(s)	694, 857, 919, 970, 1048, 1264, 1399, 1489
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	6 cut(s)	375, 427, 706, 760, 923, 1763
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	380, 1723, 1734
BsgI	GTGCAG	4 cut(s)	449, 1409, 1499, 1589
Bsh1236I	CGCG	1 cut(s)	1734
BshFI	GGCC	2 cut(s)	174, 498
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	1715
BsiSI	CCGG	1 cut(s)	606
BsmAI	GTCTC	8 cut(s)	80, 136, 300, 364, 726, 806, 886, 1660
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	174, 498
BsoBI	CYCGRG	1 cut(s)	1715
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	1612
Bsp143I	GATC	3 cut(s)	343, 1075, 1621
Bsp19I	CCATGG	1 cut(s)	1201
BspACI	CCGC	3 cut(s)	146, 905, 1750
BspANI	GGCC	2 cut(s)	174, 498
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	1734
BspLI	GGNNCC	4 cut(s)	591, 598, 670, 1581
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	1629
BsrGI	TGTACA	1 cut(s)	1612
BsrI	ACTGG	6 cut(s)	375, 427, 706, 760, 923, 1763
BssECI	CCNNGG	4 cut(s)	288, 499, 1201, 1558
BssMI	GATC	3 cut(s)	343, 1075, 1621
BssNI	GRCGYC	1 cut(s)	293
BssSI	CACGAG	1 cut(s)	1591
BssT1I	CCWWGG	1 cut(s)	1201
Bst2BI	CACGAG	1 cut(s)	1591
Bst2UI	CCWGG	4 cut(s)	389, 500, 578, 594
Bst4CI	ACNGT	4 cut(s)	659, 1562, 1567, 1654
Bst6I	CTCTTC	2 cut(s)	57, 367
BstACI	GRCGYC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	1612
BstC8I	GCNNGC	4 cut(s)	466, 496, 565, 789
BstDEI	CTNAG	3 cut(s)	393, 536, 546
BstDSI	CCRYGG	2 cut(s)	1201, 1558
BstF5I	GGATG	8 cut(s)	694, 857, 919, 970, 1048, 1264, 1399, 1489
BstFNI	CGCG	1 cut(s)	1734
BstHHI	GCGC	2 cut(s)	832, 1736
BstKTI	GATC	3 cut(s)	346, 1078, 1624
BstMAI	GTCTC	8 cut(s)	80, 136, 300, 364, 726, 806, 886, 1660
BstMBI	GATC	3 cut(s)	343, 1075, 1621
BstMWI	GCNNNNNNNGC	2 cut(s)	797, 1720
BstNI	CCWGG	4 cut(s)	389, 500, 578, 594
BstNSI	RCATGY	2 cut(s)	791, 1002
BstPAI	GACNNNNGTC	1 cut(s)	1704
BstSCI	CCNGG	4 cut(s)	387, 498, 576, 592
BstSFI	CTRYAG	2 cut(s)	459, 726
BstUI	CGCG	1 cut(s)	1734
BstV1I	GCAGC	3 cut(s)	380, 1723, 1734
BstV2I	GAAGAC	3 cut(s)	390, 522, 1203
BstXI	CCANNNNNNTGG	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	174, 498
BtgI	CCRYGG	2 cut(s)	1201, 1558
BtsCI	GGATG	8 cut(s)	694, 857, 919, 970, 1048, 1264, 1399, 1489
BtsIMutI	CAGTG	3 cut(s)	382, 677, 849
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	466, 496, 565, 789
CfoI	GCGC	2 cut(s)	832, 1736
Cfr13I	GGNCC	3 cut(s)	452, 1510, 1688
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	306, 1563, 1613
CviQI	GTAC	3 cut(s)	306, 1563, 1613
DdeI	CTNAG	3 cut(s)	393, 536, 546
DpnI	GATC	3 cut(s)	345, 1077, 1623
DpnII	GATC	3 cut(s)	343, 1075, 1621
Eam1104I	CTCTTC	2 cut(s)	57, 367
EarI	CTCTTC	2 cut(s)	57, 367
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	1201
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	452, 1510, 1688
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	3 cut(s)	114, 348, 1215
Eco88I	CYCGRG	1 cut(s)	1715
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	4 cut(s)	387, 498, 576, 592
EcoT14I	CCWWGG	1 cut(s)	1201
EcoT22I	ATGCAT	1 cut(s)	793
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	1201
Esp3I	CGTCTC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	369, 1737, 1748, 1751
FokI	GGATG	8 cut(s)	701, 844, 906, 977, 1055, 1271, 1406, 1496
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	369, 1737, 1748, 1751
FspBI	CTAG	1 cut(s)	1724
GlaI	GCGC	2 cut(s)	831, 1735
GluI	GCNGC	4 cut(s)	369, 1737, 1748, 1751
GsuI	CTGGAG	3 cut(s)	560, 723, 1746
HaeIII	GGCC	2 cut(s)	174, 498
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	2 cut(s)	832, 1736
Hin1I	GRCGYC	1 cut(s)	293
Hin6I	GCGC	2 cut(s)	830, 1734
HinP1I	GCGC	2 cut(s)	830, 1734
HincII	GTYRAC	1 cut(s)	1354
HindII	GTYRAC	1 cut(s)	1354
HinfI	GANTC	8 cut(s)	5, 357, 734, 854, 946, 1106, 1628, 1718
HpaII	CCGG	1 cut(s)	606
Hpy166II	GTNNAC	2 cut(s)	1354, 1642
Hpy8I	GTNNAC	2 cut(s)	1354, 1642
HpyAV	CCTTC	3 cut(s)	926, 1058, 1763
HpyCH4III	ACNGT	4 cut(s)	659, 1562, 1567, 1654
HpyCH4IV	ACGT	2 cut(s)	993, 1356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	797, 1720
HpyF3I	CTNAG	3 cut(s)	393, 536, 546
HpySE526I	ACGT	2 cut(s)	993, 1356
Hsp92I	GRCGYC	1 cut(s)	293
HspAI	GCGC	2 cut(s)	830, 1734
Kzo9I	GATC	3 cut(s)	343, 1075, 1621
Lsp1109I	GCAGC	3 cut(s)	380, 1723, 1734
LweI	GCATC	7 cut(s)	550, 800, 1033, 1111, 1249, 1309, 1701
MaeI	CTAG	1 cut(s)	1724
MaeII	ACGT	2 cut(s)	993, 1356
MaeIII	GTNAC	4 cut(s)	407, 776, 994, 1783
MalI	GATC	3 cut(s)	345, 1077, 1623
MboI	GATC	3 cut(s)	343, 1075, 1621
MhlI	GDGCHC	1 cut(s)	201
MlyI	GAGTC	5 cut(s)	366, 728, 955, 1622, 1727
MmeI	TCCRAC	1 cut(s)	279
Mph1103I	ATGCAT	1 cut(s)	793
MseI	TTAA	7 cut(s)	264, 323, 330, 555, 663, 822, 1004
MslI	CAYNNNNRTG	1 cut(s)	1083
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	4 cut(s)	389, 500, 578, 594
MvaI	CCWGG	4 cut(s)	389, 500, 578, 594
MvnI	CGCG	1 cut(s)	1734
MwoI	GCNNNNNNNGC	2 cut(s)	797, 1720
NcoI	CCATGG	1 cut(s)	1201
NdeII	GATC	3 cut(s)	343, 1075, 1621
NlaIV	GGNNCC	4 cut(s)	591, 598, 670, 1581
NmuCI	GTSAC	3 cut(s)	776, 994, 1783
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	2 cut(s)	791, 1002
PaeI	GCATGC	1 cut(s)	791
PciI	ACATGT	1 cut(s)	998
PfeI	GAWTC	3 cut(s)	5, 854, 1106
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	4 cut(s)	370, 1738, 1749, 1752
PleI	GAGTC	5 cut(s)	365, 728, 954, 1622, 1726
PpsI	GAGTC	5 cut(s)	365, 728, 954, 1622, 1726
PscI	ACATGT	1 cut(s)	998
PshAI	GACNNNNGTC	1 cut(s)	1704
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	4 cut(s)	387, 498, 576, 592
PspGI	CCWGG	4 cut(s)	387, 498, 576, 592
PspN4I	GGNNCC	4 cut(s)	591, 598, 670, 1581
PspPI	GGNCC	3 cut(s)	452, 1510, 1688
RsaI	GTAC	3 cut(s)	307, 1564, 1614
RsaNI	GTAC	3 cut(s)	306, 1563, 1613
RseI	CAYNNNNRTG	1 cut(s)	1083
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	264, 323, 330, 555, 663, 822, 1004
SatI	GCNGC	4 cut(s)	369, 1737, 1748, 1751
Sau3AI	GATC	3 cut(s)	343, 1075, 1621
Sau96I	GGNCC	3 cut(s)	452, 1510, 1688
SchI	GAGTC	5 cut(s)	366, 728, 955, 1622, 1727
ScrFI	CCNGG	4 cut(s)	389, 500, 578, 594
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	7 cut(s)	550, 800, 1033, 1111, 1249, 1309, 1701
SfcI	CTRYAG	2 cut(s)	459, 726
SinI	GGWCC	3 cut(s)	452, 1510, 1688
SmiMI	CAYNNNNRTG	1 cut(s)	1083
SmlI	CTYRAG	9 cut(s)	137, 299, 489, 1071, 1110, 1281, 1371, 1416, 1461
SmoI	CTYRAG	9 cut(s)	137, 299, 489, 1071, 1110, 1281, 1371, 1416, 1461
SphI	GCATGC	1 cut(s)	791
SsiI	CCGC	3 cut(s)	146, 905, 1750
SspMI	CTAG	1 cut(s)	1724
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	4 cut(s)	387, 498, 576, 592
StyI	CCWWGG	1 cut(s)	1201
TaaI	ACNGT	4 cut(s)	659, 1562, 1567, 1654
TaiI	ACGT	2 cut(s)	996, 1359
TaqI	TCGA	3 cut(s)	165, 352, 944
TatI	WGTACW	1 cut(s)	1612
TauI	GCSGC	1 cut(s)	1753
TfiI	GAWTC	3 cut(s)	5, 854, 1106
Tru1I	TTAA	7 cut(s)	264, 323, 330, 555, 663, 822, 1004
Tru9I	TTAA	7 cut(s)	264, 323, 330, 555, 663, 822, 1004
TscAI	CASTG	3 cut(s)	382, 684, 856
TseFI	GTSAC	3 cut(s)	776, 994, 1783
TseI	GCWGC	3 cut(s)	368, 1736, 1747
Tsp45I	GTSAC	3 cut(s)	776, 994, 1783
TspDTI	ATGAA	5 cut(s)	212, 396, 432, 846, 1110
TspGWI	ACGGA	3 cut(s)	273, 1039, 1155
TspRI	CASTG	3 cut(s)	382, 684, 856
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	452, 1510, 1688
XapI	RAATTY	2 cut(s)	157, 1677
XceI	RCATGY	2 cut(s)	791, 1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XspI	CTAG	1 cut(s)	1724
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.