Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

48513181 .. 48528654

Gene Structure 15474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG425600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3768 bp

ATGAAGAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTTCCGGACCCGGTCGTCAAATTTTCCGGCAAACTCAAAAACCCTAGCCGCGAGGACCATCGGAATTCGAAGGACGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGAAGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCGGTATACAATTGAAGAGAGGCTTGCCATCATAAATGATTTGAAACTCAGTGCTGCCACAGACTCCAGTCATGAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCCTGCGTAGGTGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGCTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAATCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGCGTAGGTGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGCTGTCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAATCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCTTGCTATCATAAATGATTTGAAATTGAGTGCTGCCACAGACTCCAGTCATGAACAACAATCTGATTTGGACAAAGTCAGTAGCATACCTTATGCAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATAGTGCTAGCTTAGATTCCCGCCTGGGCACAATGGAAGAGGATCCGGCTACGAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCATGAACAACAGTCTGAATTAGATGACAATGGACGCAGAAAGTTTCTTTCTGAAACAGAGACTGGAGGTTCAGATGCTCCCTCACCTCCCCCCCAGACAAGCCAGTTAGACTGTGGCATTACAGTGTCCCCTTCCAGTAACGACCCAGTTGATGTTATTTCAGATGCTGATGAAAGCACAAGTTCTTTGGGTACTTATGAATTGGGTCATTGCTCGGGCAATTTTGAAATGGATAACGTAAATATGACAGTTGTTCTTTATCCGGATTATGTTGTATATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCAGTGGTTTAGCACCGTCTGAAAACGACAAAACTTTGAATTTTGAATGGGGAGTTGATGATCTTGTCAATGTTGAGTGTCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAAGGATGCAGATGGAGATGATGATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAACCCAACTGGTCACAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATCTATTGGAACCGGTGCAAATCATGGAAGCGGACGATTCACTTGGCCAGAGGCATCATTTTCCAAATTTCGACGAGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCCGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCCGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCCAGTGTTCCTGGTGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACAAGGAAAGTGGATTTGTTCGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGGTAAGATATCTGTGAGTGGACCTATGCACATAGATTCTACATTAGTCTTCCCATCATTTATGTGCTTTTGTCATGTTTCAGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCATACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTCCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTGTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCGACATAAACAAGTTCTCCACCTTTCTTAATGCAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATCGTTATCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAGGCTAAATATCAGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCTATAGCTTGCCAAGAAAATGTATCAACTTCTCAAGCAGACCATGGAATCGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCTGAGTGTGTTAGTGATGCAGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAATCTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACGGGAGACACTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTTGTGGTATTCAATGCTCTTCGAAATCTTATGGAGTTGAGACTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAATGGATGTACAAAATTATCCATCATTGGACAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCGGACCCTTGATTGAAGAAGGTTTTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATGTACAGACCCATTCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAGCACTTCTGTTACTGAAGAAAGTTCTCTGGACCAAAAAAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATATACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGCGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGAAGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1255

Amino Acids

138.83

Weight (kDa)

4.52

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	454 - 572	2.6e-43	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	627 - 852	8.8e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc36I	ACCTGC	2 cut(s)	2421, 2888
Acc65I	GGTACC	1 cut(s)	2275
AccB1I	GGYRCC	2 cut(s)	2275, 3136
AccBSI	CCGCTC	1 cut(s)	3345
AccI	GTMKAC	5 cut(s)	36, 266, 464, 665, 866
AccII	CGCG	2 cut(s)	19, 111
AccIII	TCCGGA	3 cut(s)	64, 1378, 1810
AciI	CCGC	8 cut(s)	14, 17, 19, 109, 1033, 1742, 2416, 3345
AclI	AACGTT	4 cut(s)	168, 366, 567, 768
AclWI	GGATC	9 cut(s)	1049, 1062, 1719, 1814, 1827, 1997, 2010, 2733, 3381
AcoI	YGGCCR	1 cut(s)	1756
AcsI	RAATTY	7 cut(s)	80, 124, 1106, 1492, 1777, 2873, 3600
AcuI	CTGAAG	3 cut(s)	3216, 3546, 3720
AcvI	CACGTG	1 cut(s)	3300
AfaI	GTAC	7 cut(s)	1309, 1411, 1578, 2277, 3270, 3438, 3649
AfiI	CCNNNNNNNGG	7 cut(s)	23, 401, 602, 977, 1999, 3550, 3746
AflIII	ACRYGT	2 cut(s)	2041, 3299
AgeI	ACCGGT	1 cut(s)	1723
AjnI	CCWGG	7 cut(s)	148, 1035, 1992, 2017, 2143, 2859, 3244
AleI	CACNNNNGTG	1 cut(s)	3302
Alw21I	GWGCWC	1 cut(s)	3515
Alw26I	GTCTC	7 cut(s)	1169, 2247, 2327, 2372, 3018, 3098, 3764
AlwI	GGATC	9 cut(s)	1049, 1062, 1719, 1814, 1827, 1997, 2010, 2733, 3381
AlwNI	CAGNNNCTG	3 cut(s)	1178, 1283, 3698
Ama87I	CYCGRG	2 cut(s)	1330, 1934
Aor13HI	TCCGGA	3 cut(s)	64, 1378, 1810
AoxI	GGCC	7 cut(s)	25, 1756, 2464, 2857, 3247, 3313, 3481
ApeKI	GCWGC	7 cut(s)	314, 512, 713, 914, 1091, 2030, 3713
ApoI	RAATTY	7 cut(s)	80, 124, 1106, 1492, 1777, 2873, 3600
ArsI	GACNNNNNNTTYG	2 cut(s)	1775, 1807
AseI	ATTAAT	1 cut(s)	2615
AsiGI	ACCGGT	1 cut(s)	1723
Asp700I	GAANNNNTTC	2 cut(s)	2877, 3366
Asp718I	GGTACC	1 cut(s)	2275
AspLEI	GCGC	2 cut(s)	11, 2598
AspS9I	GGNCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	1191, 2159, 3344
AsuII	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
AsuNHI	GCTAGC	1 cut(s)	1019
AvaI	CYCGRG	2 cut(s)	1330, 1934
AvaII	GGWCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
BaeGI	GKGCMC	1 cut(s)	1043
BalI	TGGCCA	1 cut(s)	1758
BamHI	GGATCC	3 cut(s)	1054, 1819, 2002
BanI	GGYRCC	2 cut(s)	2275, 3136
BanII	GRGCYC	1 cut(s)	1420
BbrPI	CACGTG	1 cut(s)	3300
BbsI	GAAGAC	2 cut(s)	2206, 3630
Bbv12I	GWGCWC	1 cut(s)	3515
BbvI	GCAGC	7 cut(s)	301, 499, 700, 901, 1078, 2017, 3700
BceAI	ACGGC	1 cut(s)	1814
BciT130I	CCWGG	7 cut(s)	150, 1037, 1994, 2019, 2145, 2861, 3246
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	7 cut(s)	1169, 2247, 2327, 2372, 3018, 3098, 3764
BfaI	CTAG	5 cut(s)	105, 1020, 2157, 2486, 3473
BfmI	CTRYAG	2 cut(s)	2751, 2895
BfuAI	ACCTGC	2 cut(s)	2421, 2888
BisI	GCNGC	9 cut(s)	17, 109, 315, 513, 714, 915, 1092, 2031, 3714
BlsI	GCNGC	9 cut(s)	18, 110, 316, 514, 715, 916, 1093, 2032, 3715
Bme1390I	CCNGG	8 cut(s)	71, 150, 1037, 1994, 2019, 2145, 2861, 3246
Bme18I	GGWCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
BmeT110I	CYCGRG	2 cut(s)	1330, 1934
BmgT120I	GGNCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
BmrFI	CCNGG	8 cut(s)	71, 150, 1037, 1994, 2019, 2145, 2861, 3246
BmrI	ACTGGG	1 cut(s)	1256
BmtI	GCTAGC	1 cut(s)	1023
BmuI	ACTGGG	1 cut(s)	1256
BoxI	GACNNNNGTC	2 cut(s)	327, 927
BpiI	GAAGAC	2 cut(s)	2206, 3630
BpmI	CTGGAG	6 cut(s)	310, 910, 1200, 2450, 3015, 3723
Bpu14I	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
BpuEI	CTTGAG	2 cut(s)	2576, 2766
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	3300
BsaBI	GATNNNNATC	2 cut(s)	1854, 2676
BsaI	GGTCTC	1 cut(s)	2327
BsaJI	CCNNGG	6 cut(s)	17, 260, 1036, 1935, 2580, 2791
BsaWI	WCCGGW	4 cut(s)	64, 1378, 1723, 1810
BsaXI	ACNNNNNCTCC	4 cut(s)	2528, 2558, 3680, 3710
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 401, 602, 977, 1999, 3550, 3746
Bse118I	RCCGGY	1 cut(s)	1723
Bse3DI	GCAATG	4 cut(s)	996, 1003, 1324, 3649
Bse8I	GATNNNNATC	2 cut(s)	1854, 2676
BseAI	TCCGGA	3 cut(s)	64, 1378, 1810
BseBI	CCWGG	7 cut(s)	150, 1037, 1994, 2019, 2145, 2861, 3246
BseDI	CCNNGG	6 cut(s)	17, 260, 1036, 1935, 2580, 2791
BseJI	GATNNNNATC	2 cut(s)	1854, 2676
BseLI	CCNNNNNNNGG	7 cut(s)	23, 401, 602, 977, 1999, 3550, 3746
BseMI	GCAATG	4 cut(s)	996, 1003, 1324, 3649
BseMII	CTCAG	5 cut(s)	322, 1542, 2271, 2829, 2881
BseRI	GAGGAG	5 cut(s)	249, 447, 648, 849, 1646
BseSI	GKGCMC	1 cut(s)	1043
BseXI	GCAGC	7 cut(s)	301, 499, 700, 901, 1078, 2017, 3700
BseYI	CCCAGC	1 cut(s)	1419
BsgI	GTGCAG	2 cut(s)	3243, 3359
Bsh1236I	CGCG	2 cut(s)	19, 111
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 1758, 2466, 2859, 3249, 3315, 3483
BshNI	GGYRCC	2 cut(s)	2275, 3136
BshTI	ACCGGT	1 cut(s)	1723
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	3515
BsiHKCI	CYCGRG	2 cut(s)	1330, 1934
BsiSI	CCGG	7 cut(s)	65, 71, 87, 1058, 1379, 1724, 1811
BslFI	GGGAC	1 cut(s)	1228
BslI	CCNNNNNNNGG	7 cut(s)	23, 401, 602, 977, 1999, 3550, 3746
BsmAI	GTCTC	7 cut(s)	1169, 2247, 2327, 2372, 3018, 3098, 3764
BsmFI	GGGAC	1 cut(s)	1228
BsnI	GGCC	7 cut(s)	27, 1758, 2466, 2859, 3249, 3315, 3483
Bso31I	GGTCTC	1 cut(s)	2327
BsoBI	CYCGRG	2 cut(s)	1330, 1934
Bsp119I	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
Bsp1286I	GDGCHC	3 cut(s)	1043, 1420, 3515
Bsp13I	TCCGGA	3 cut(s)	64, 1378, 1810
Bsp1407I	TGTACA	3 cut(s)	1409, 3268, 3436
Bsp19I	CCATGG	1 cut(s)	2791
BspACI	CCGC	8 cut(s)	14, 17, 19, 109, 1033, 1742, 2416, 3345
BspANI	GGCC	7 cut(s)	27, 1758, 2466, 2859, 3249, 3315, 3483
BspCNI	CTCAG	5 cut(s)	321, 1543, 2270, 2830, 2880
BspEI	TCCGGA	3 cut(s)	64, 1378, 1810
BspFNI	CGCG	2 cut(s)	19, 111
BspHI	TCATGA	7 cut(s)	331, 529, 730, 931, 1117, 1560, 3376
BspMAI	CTGCAG	1 cut(s)	2899
BspMI	ACCTGC	2 cut(s)	2421, 2888
BspOI	GCTAGC	1 cut(s)	1023
BspPI	GGATC	9 cut(s)	1049, 1062, 1719, 1814, 1827, 1997, 2010, 2733, 3381
BspQI	GCTCTTC	2 cut(s)	3088, 3696
BspT104I	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
BspT107I	GGYRCC	2 cut(s)	2275, 3136
BspTNI	GGTCTC	1 cut(s)	2327
BsrBI	CCGCTC	1 cut(s)	3345
BsrDI	GCAATG	4 cut(s)	996, 1003, 1324, 3649
BsrFI	RCCGGY	1 cut(s)	1723
BsrGI	TGTACA	3 cut(s)	1409, 3268, 3436
BssAI	RCCGGY	1 cut(s)	1723
BssECI	CCNNGG	6 cut(s)	17, 260, 1036, 1935, 2580, 2791
BssNAI	GTATAC	4 cut(s)	267, 465, 666, 867
BssT1I	CCWWGG	1 cut(s)	2791
Bst1107I	GTATAC	4 cut(s)	267, 465, 666, 867
Bst2UI	CCWGG	7 cut(s)	150, 1037, 1994, 2019, 2145, 2861, 3246
Bst6I	CTCTTC	9 cut(s)	45, 270, 468, 669, 870, 1044, 2349, 3088, 3696
BstAPI	GCANNNNNTGC	2 cut(s)	396, 597
BstAUI	TGTACA	3 cut(s)	1409, 3268, 3436
BstBAI	YACGTR	1 cut(s)	3300
BstBI	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
BstDEI	CTNAG	7 cut(s)	308, 1024, 1551, 2257, 2828, 2838, 2867
BstDSI	CCRYGG	2 cut(s)	17, 2791
BstENI	CCTNNNNNAGG	3 cut(s)	600, 975, 1997
BstFNI	CGCG	2 cut(s)	19, 111
BstHHI	GCGC	2 cut(s)	11, 2598
BstMAI	GTCTC	7 cut(s)	1169, 2247, 2327, 2372, 3018, 3098, 3764
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 597
BstNI	CCWGG	7 cut(s)	150, 1037, 1994, 2019, 2145, 2861, 3246
BstNSI	RCATGY	2 cut(s)	1692, 3560
BstPAI	GACNNNNGTC	2 cut(s)	327, 927
BstSCI	CCNGG	8 cut(s)	69, 148, 1035, 1992, 2017, 2143, 2859, 3244
BstSFI	CTRYAG	2 cut(s)	2751, 2895
BstSLI	GKGCMC	1 cut(s)	1043
BstUI	CGCG	2 cut(s)	19, 111
BstV1I	GCAGC	7 cut(s)	301, 499, 700, 901, 1078, 2017, 3700
BstV2I	GAAGAC	2 cut(s)	2206, 3630
BstX2I	RGATCY	5 cut(s)	1054, 1711, 1819, 2002, 2738
BstXI	CCANNNNNNTGG	1 cut(s)	2957
BstYI	RGATCY	5 cut(s)	1054, 1711, 1819, 2002, 2738
BstZ17I	GTATAC	4 cut(s)	267, 465, 666, 867
BsuRI	GGCC	7 cut(s)	27, 1758, 2466, 2859, 3249, 3315, 3483
BtgI	CCRYGG	2 cut(s)	17, 2791
BtsI	GCAGTG	2 cut(s)	1015, 2674
BveI	ACCTGC	2 cut(s)	2421, 2888
CaiI	CAGNNNCTG	3 cut(s)	1178, 1283, 3698
CciI	TCATGA	7 cut(s)	331, 529, 730, 931, 1117, 1560, 3376
CfoI	GCGC	2 cut(s)	11, 2598
Cfr10I	RCCGGY	1 cut(s)	1723
Cfr13I	GGNCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	1 cut(s)	1158
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	7 cut(s)	1308, 1410, 1577, 2276, 3269, 3437, 3648
CspAI	ACCGGT	1 cut(s)	1723
CspCI	CAANNNNNGTGG	4 cut(s)	1438, 1473, 2046, 2081
CviQI	GTAC	7 cut(s)	1308, 1410, 1577, 2276, 3269, 3437, 3648
DdeI	CTNAG	7 cut(s)	308, 1024, 1551, 2257, 2828, 2838, 2867
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	1756
Eam1104I	CTCTTC	9 cut(s)	45, 270, 468, 669, 870, 1044, 2349, 3088, 3696
EarI	CTCTTC	9 cut(s)	45, 270, 468, 669, 870, 1044, 2349, 3088, 3696
Eco130I	CCWWGG	1 cut(s)	2791
Eco147I	AGGCCT	2 cut(s)	27, 2859
Eco24I	GRGCYC	1 cut(s)	1420
Eco31I	GGTCTC	1 cut(s)	2327
Eco32I	GATATC	1 cut(s)	2175
Eco47I	GGWCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
Eco57I	CTGAAG	3 cut(s)	3216, 3546, 3720
Eco72I	CACGTG	1 cut(s)	3300
Eco88I	CYCGRG	2 cut(s)	1330, 1934
EcoNI	CCTNNNNNAGG	3 cut(s)	600, 975, 1997
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	7 cut(s)	148, 1035, 1992, 2017, 2143, 2859, 3244
EcoRV	GATATC	1 cut(s)	2175
EcoT14I	CCWWGG	1 cut(s)	2791
EcoT22I	ATGCAT	1 cut(s)	3160
EcoT38I	GRGCYC	1 cut(s)	1420
ErhI	CCWWGG	1 cut(s)	2791
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 867, 899
FaqI	GGGAC	1 cut(s)	1228
FauI	CCCGC	1 cut(s)	1040
FauNDI	CATATG	1 cut(s)	2455
FbaI	TGATCA	1 cut(s)	1000
FblI	GTMKAC	5 cut(s)	36, 266, 464, 665, 866
Fnu4HI	GCNGC	9 cut(s)	17, 109, 315, 513, 714, 915, 1092, 2031, 3714
FriOI	GRGCYC	1 cut(s)	1420
Fsp4HI	GCNGC	9 cut(s)	17, 109, 315, 513, 714, 915, 1092, 2031, 3714
FspBI	CTAG	5 cut(s)	105, 1020, 2157, 2486, 3473
GlaI	GCGC	2 cut(s)	10, 2597
GluI	GCNGC	9 cut(s)	17, 109, 315, 513, 714, 915, 1092, 2031, 3714
GsaI	CCCAGC	1 cut(s)	1423
GsuI	CTGGAG	6 cut(s)	310, 910, 1200, 2450, 3015, 3723
HaeIII	GGCC	7 cut(s)	27, 1758, 2466, 2859, 3249, 3315, 3483
HapII	CCGG	7 cut(s)	65, 71, 87, 1058, 1379, 1724, 1811
HgaI	GACGC	1 cut(s)	1158
HhaI	GCGC	2 cut(s)	11, 2598
Hin6I	GCGC	2 cut(s)	9, 2596
HinP1I	GCGC	2 cut(s)	9, 2596
HincII	GTYRAC	6 cut(s)	220, 418, 619, 820, 1428, 3631
HindII	GTYRAC	6 cut(s)	220, 418, 619, 820, 1428, 3631
HpaI	GTTAAC	1 cut(s)	1428
HpaII	CCGG	7 cut(s)	65, 71, 87, 1058, 1379, 1724, 1811
HphI	GGTGA	3 cut(s)	1191, 2159, 3344
Hpy99I	CGWCG	2 cut(s)	50, 1787
HpyAV	CCTTC	9 cut(s)	124, 1257, 1441, 2586, 2935, 3191, 3356, 3374, 3740
HpyCH4IV	ACGT	8 cut(s)	168, 366, 567, 768, 1353, 2041, 3299, 3627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 597
HpyF3I	CTNAG	7 cut(s)	308, 1024, 1551, 2257, 2828, 2838, 2867
HpySE526I	ACGT	8 cut(s)	168, 366, 567, 768, 1353, 2041, 3299, 3627
HspAI	GCGC	2 cut(s)	9, 2596
Kpn2I	TCCGGA	3 cut(s)	64, 1378, 1810
KpnI	GGTACC	1 cut(s)	2279
Ksp22I	TGATCA	1 cut(s)	1000
KspAI	GTTAAC	1 cut(s)	1428
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	3088, 3696
LmnI	GCTCC	6 cut(s)	1198, 1415, 2431, 2512, 2960, 3688
Lsp1109I	GCAGC	7 cut(s)	301, 499, 700, 901, 1078, 2017, 3700
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	5 cut(s)	105, 1020, 2157, 2486, 3473
MaeII	ACGT	8 cut(s)	168, 366, 567, 768, 1353, 2041, 3299, 3627
MaeIII	GTNAC	6 cut(s)	1253, 1665, 2811, 3295, 3520, 3681
MbiI	CCGCTC	1 cut(s)	3345
MfeI	CAATTG	4 cut(s)	270, 468, 669, 870
MflI	RGATCY	5 cut(s)	1054, 1711, 1819, 2002, 2738
MhlI	GDGCHC	3 cut(s)	1043, 1420, 3515
MlsI	TGGCCA	1 cut(s)	1758
MluNI	TGGCCA	1 cut(s)	1758
MmeI	TCCRAC	5 cut(s)	169, 2062, 2230, 3398, 3541
Mox20I	TGGCCA	1 cut(s)	1758
Mph1103I	ATGCAT	1 cut(s)	3160
MroI	TCCGGA	3 cut(s)	64, 1378, 1810
MroXI	GAANNNNTTC	2 cut(s)	2877, 3366
MscI	TGGCCA	1 cut(s)	1758
MseI	TTAA	5 cut(s)	1427, 1881, 2271, 2556, 2615
MslI	CAYNNNNRTG	6 cut(s)	1008, 1238, 2145, 2227, 2955, 3302
Msp20I	TGGCCA	1 cut(s)	1758
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	7 cut(s)	65, 71, 87, 1058, 1379, 1724, 1811
MspR9I	CCNGG	8 cut(s)	71, 150, 1037, 1994, 2019, 2145, 2861, 3246
MunI	CAATTG	4 cut(s)	270, 468, 669, 870
MvaI	CCWGG	7 cut(s)	150, 1037, 1994, 2019, 2145, 2861, 3246
MvnI	CGCG	2 cut(s)	19, 111
MwoI	GCNNNNNNNGC	2 cut(s)	396, 597
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	2791
NdeI	CATATG	1 cut(s)	2455
NheI	GCTAGC	1 cut(s)	1019
NmuCI	GTSAC	3 cut(s)	1665, 3295, 3681
NsiI	ATGCAT	1 cut(s)	3160
NspI	RCATGY	2 cut(s)	1692, 3560
NspV	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
OliI	CACNNNNGTG	1 cut(s)	3302
PagI	TCATGA	7 cut(s)	331, 529, 730, 931, 1117, 1560, 3376
PceI	AGGCCT	2 cut(s)	27, 2859
PciSI	GCTCTTC	2 cut(s)	3088, 3696
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	2 cut(s)	2877, 3366
PfeI	GAWTC	7 cut(s)	1028, 1748, 1927, 2201, 2297, 2796, 2891
PflFI	GACNNNGTC	3 cut(s)	71, 956, 3293
PinAI	ACCGGT	1 cut(s)	1723
PkrI	GCNGC	9 cut(s)	18, 110, 316, 514, 715, 916, 1093, 2032, 3715
PmaCI	CACGTG	1 cut(s)	3300
PmlI	CACGTG	1 cut(s)	3300
Ppu21I	YACGTR	1 cut(s)	3300
PshAI	GACNNNNGTC	2 cut(s)	327, 927
PshBI	ATTAAT	1 cut(s)	2615
Psp1406I	AACGTT	4 cut(s)	168, 366, 567, 768
Psp6I	CCWGG	7 cut(s)	148, 1035, 1992, 2017, 2143, 2859, 3244
PspCI	CACGTG	1 cut(s)	3300
PspFI	CCCAGC	1 cut(s)	1419
PspGI	CCWGG	7 cut(s)	148, 1035, 1992, 2017, 2143, 2859, 3244
PspPI	GGNCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
PstI	CTGCAG	1 cut(s)	2899
PstNI	CAGNNNCTG	3 cut(s)	1178, 1283, 3698
PsuI	RGATCY	5 cut(s)	1054, 1711, 1819, 2002, 2738
PsyI	GACNNNGTC	3 cut(s)	71, 956, 3293
RsaI	GTAC	7 cut(s)	1309, 1411, 1578, 2277, 3270, 3438, 3649
RsaNI	GTAC	7 cut(s)	1308, 1410, 1577, 2276, 3269, 3437, 3648
RseI	CAYNNNNRTG	6 cut(s)	1008, 1238, 2145, 2227, 2955, 3302
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	3088, 3696
SaqAI	TTAA	5 cut(s)	1427, 1881, 2271, 2556, 2615
SatI	GCNGC	9 cut(s)	17, 109, 315, 513, 714, 915, 1092, 2031, 3714
Sau96I	GGNCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
ScrFI	CCNGG	8 cut(s)	71, 150, 1037, 1994, 2019, 2145, 2861, 3246
SduI	GDGCHC	3 cut(s)	1043, 1420, 3515
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	2751, 2895
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	9 cut(s)	128, 155, 353, 554, 755, 1978, 2076, 2928, 3086
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
SmiMI	CAYNNNNRTG	6 cut(s)	1008, 1238, 2145, 2227, 2955, 3302
SmlI	CTYRAG	2 cut(s)	2591, 2781
SmoI	CTYRAG	2 cut(s)	2591, 2781
SseBI	AGGCCT	2 cut(s)	27, 2859
SsiI	CCGC	8 cut(s)	14, 17, 19, 109, 1033, 1742, 2416, 3345
SspI	AATATT	1 cut(s)	1706
SspMI	CTAG	5 cut(s)	105, 1020, 2157, 2486, 3473
StuI	AGGCCT	2 cut(s)	27, 2859
StyD4I	CCNGG	8 cut(s)	69, 148, 1035, 1992, 2017, 2143, 2859, 3244
StyI	CCWWGG	1 cut(s)	2791
TaiI	ACGT	8 cut(s)	171, 369, 570, 771, 1356, 2044, 3302, 3630
TaqII	GACCGA	1 cut(s)	3183
TatI	WGTACW	4 cut(s)	1409, 1576, 3268, 3436
TauI	GCSGC	2 cut(s)	19, 111
TfiI	GAWTC	7 cut(s)	1028, 1748, 1927, 2201, 2297, 2796, 2891
Tru1I	TTAA	5 cut(s)	1427, 1881, 2271, 2556, 2615
Tru9I	TTAA	5 cut(s)	1427, 1881, 2271, 2556, 2615
TseFI	GTSAC	3 cut(s)	1665, 3295, 3681
TseI	GCWGC	7 cut(s)	314, 512, 713, 914, 1091, 2030, 3713
Tsp45I	GTSAC	3 cut(s)	1665, 3295, 3681
TspGWI	ACGGA	2 cut(s)	1562, 3408
Tth111I	GACNNNGTC	3 cut(s)	71, 956, 3293
VpaK11BI	GGWCC	8 cut(s)	67, 115, 994, 2186, 3242, 3347, 3410, 3541
VspI	ATTAAT	1 cut(s)	2615
XagI	CCTNNNNNAGG	3 cut(s)	600, 975, 1997
XapI	RAATTY	7 cut(s)	80, 124, 1106, 1492, 1777, 2873, 3600
XbaI	TCTAGA	1 cut(s)	2485
XceI	RCATGY	2 cut(s)	1692, 3560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1226
XmiI	GTMKAC	5 cut(s)	36, 266, 464, 665, 866
XmnI	GAANNNNTTC	2 cut(s)	2877, 3366
XspI	CTAG	5 cut(s)	105, 1020, 2157, 2486, 3473
Zsp2I	ATGCAT	1 cut(s)	3160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.