Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

57179253 .. 57192217

Gene Structure 12965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3522 bp

ATGAATAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTCCCGGACCCGGTCGTCAAATTTTCCGGCAAACTCAAAAACCCTAGCCGCGAGGACCATCGGAATTCGAAGGACGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGAAGTTGACACTGACCACTGTTGTGAAAATGCTATTTCTCATTCTCCTCGGTATACAATTGAAGAGAGGCTTGCCATCATAAATGATTTGAAACTCAGTGCTGCCACAGACACCAGTCATGAACAATCTGATTTATGTTCGAAAGAAGCCAACATTCAAGCCAAAGAAATCAGTAGCATACCTTGCGTAGGTGTTGATGAAGTTGACACTGAGCACTGTTGTAAAAATGCTGTTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGCTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAATCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCTTGCTATCATAAACGATTTGAAATTCAGTGCTGCCACAGACTCCAGTCATGAACAACAATCTGATTTGGACAAAGTCAGTAGCATACCTTATGCAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATAGTGCTAGCTTAGATTCCCGCCTGGGCACAATGGAAGAGGATCCGGCTATGAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCATGAACAACAGTCTGAATTAGATGACAATGGATGCAGAAAGTTTCTTTCTGAAACAGAGACTGGCGGTTCAGATGCTCCCTCACCTCCCCCCCAGACAAGCCAGTTAGACTGTGGCATTACAGTGTCCCCTTCCAGTAACGACCCAGTTGATGTTATTTCAGATGCTGATGAAAGTACAAGTGAGTCTCCATCAAGTCCCCTATCCCCAATTGAAGAGAATGATGGTTCTTTGGGTACTTATGAATTGGGTCATTGCTCGGGCAATTTTGAAATGGATAACGTAAATATGACAGTTGTTCTTTATCCGGATTATGTTGTCTATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCAGTGGTTTAGCACCATCTGAAAACGACAAAACTTTGAATTTTGAATGGGGAGTTGATGATCTTGTCAATGTTGAGTGTCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAGGGATGCAGATGGAGATGATGATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAATCCAACTGGTCACAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATCTATTGGAACCAGTGCAAATCATGGAAGCGGACGATTCACTTGGCCAGAGGCATCATTTTCCAAATTTCGACGAGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCTGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCCGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCCAGTGTTCCTGGTGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACAAGGAAAGTGGATTTGTTCGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCATACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTCCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTGTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCAACATAAACAAGTTCTCCACCTTTCTTAATGCAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATCGTTATCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAAGCTAAATATCAGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCAATAGCTTGCCAAGAAAATATATCAACTTCTCAAGCAGACCACGGAATCGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCTGAGTGTGTTAGTGATGCAGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACGGGAGACGCTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTTGTGGTATTCAATGCTCTTCGAAATCTTATGGAGTTGAGAGTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACAATGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAAGGGATGTACAAAATTATCCATCATTGGACAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCCGGTTTGGGTGAGGTGCAGAGCAGATCCTTGATTGAAGAAGGTTCTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATGTACAGACCCATCCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAACACTTCTGTTACTGAAGAAAGTTCTCTGGACCAAAAAAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATACACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGCGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGACGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1173

Amino Acids

129.9

Weight (kDa)

4.48

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	399 - 517	1.3e-42	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	572 - 765	2.4e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc36I	ACCTGC	2 cut(s)	2175, 2642
Acc65I	GGTACC	1 cut(s)	2029
AccB1I	GGYRCC	2 cut(s)	2029, 2890
AccI	GTMKAC	4 cut(s)	36, 257, 455, 656
AccII	CGCG	2 cut(s)	19, 111
AccIII	TCCGGA	2 cut(s)	1213, 1645
AciI	CCGC	8 cut(s)	14, 17, 19, 109, 823, 972, 1577, 2170
AclI	AACGTT	2 cut(s)	168, 558
AcoI	YGGCCR	1 cut(s)	1591
AcsI	RAATTY	8 cut(s)	80, 124, 695, 896, 1327, 1612, 2627, 3354
AcuI	CTGAAG	3 cut(s)	2970, 3300, 3474
AcvI	CACGTG	1 cut(s)	3054
AfaI	GTAC	8 cut(s)	1084, 1144, 1246, 1413, 2031, 3024, 3192, 3403
AfiI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 767, 1834, 3304, 3500
AflIII	ACRYGT	2 cut(s)	1876, 3053
AjnI	CCWGG	7 cut(s)	148, 825, 1827, 1852, 1978, 2613, 2998
AleI	CACNNNNGTG	2 cut(s)	225, 3056
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	7 cut(s)	959, 1098, 2001, 2081, 2126, 2772, 3518
AlwNI	CAGNNNCTG	3 cut(s)	968, 1073, 3452
Ama87I	CYCGRG	2 cut(s)	1165, 1769
Aor13HI	TCCGGA	2 cut(s)	1213, 1645
AoxI	GGCC	7 cut(s)	25, 1591, 2218, 2611, 3001, 3067, 3235
ApeKI	GCWGC	6 cut(s)	305, 503, 704, 881, 1865, 3467
ApoI	RAATTY	8 cut(s)	80, 124, 695, 896, 1327, 1612, 2627, 3354
ArsI	GACNNNNNNTTYG	2 cut(s)	1610, 1642
AseI	ATTAAT	1 cut(s)	2369
Asp700I	GAANNNNTTC	1 cut(s)	2631
Asp718I	GGTACC	1 cut(s)	2029
AspLEI	GCGC	2 cut(s)	11, 2352
AspS9I	GGNCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
AsuC2I	CCSGG	2 cut(s)	65, 71
AsuHPI	GGTGA	3 cut(s)	981, 1994, 3098
AsuII	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
AsuNHI	GCTAGC	1 cut(s)	809
AvaI	CYCGRG	2 cut(s)	1165, 1769
AvaII	GGWCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
BaeGI	GKGCMC	1 cut(s)	833
BaeI	ACNNNNGTAYC	2 cut(s)	3354, 3387
BalI	TGGCCA	1 cut(s)	1593
BamHI	GGATCC	3 cut(s)	844, 1654, 1837
BanI	GGYRCC	2 cut(s)	2029, 2890
BanII	GRGCYC	1 cut(s)	1255
BbrPI	CACGTG	1 cut(s)	3054
BbsI	GAAGAC	1 cut(s)	3384
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	6 cut(s)	292, 490, 691, 868, 1852, 3454
BciT130I	CCWGG	7 cut(s)	150, 827, 1829, 1854, 1980, 2615, 3000
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	2 cut(s)	65, 71
BcoDI	GTCTC	7 cut(s)	959, 1098, 2001, 2081, 2126, 2772, 3518
BfaI	CTAG	5 cut(s)	105, 810, 1992, 2240, 3227
BfmI	CTRYAG	1 cut(s)	2649
BfuAI	ACCTGC	2 cut(s)	2175, 2642
BisI	GCNGC	8 cut(s)	17, 109, 306, 504, 705, 882, 1866, 3468
BlsI	GCNGC	8 cut(s)	18, 110, 307, 505, 706, 883, 1867, 3469
Bme1390I	CCNGG	9 cut(s)	65, 71, 150, 827, 1829, 1854, 1980, 2615, 3000
Bme18I	GGWCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
BmeT110I	CYCGRG	2 cut(s)	1165, 1769
BmgT120I	GGNCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
BmiI	GGNNCC	9 cut(s)	69, 846, 1252, 1557, 1656, 1839, 2031, 2892, 3444
BmrFI	CCNGG	9 cut(s)	65, 71, 150, 827, 1829, 1854, 1980, 2615, 3000
BmrI	ACTGGG	1 cut(s)	1046
BmtI	GCTAGC	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	1046
BoxI	GACNNNNGTC	2 cut(s)	318, 717
BpiI	GAAGAC	1 cut(s)	3384
BpmI	CTGGAG	4 cut(s)	700, 2204, 2769, 3477
Bpu14I	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
BpuEI	CTTGAG	2 cut(s)	2330, 2520
BpuMI	CCSGG	2 cut(s)	65, 71
BsaAI	YACGTR	1 cut(s)	3054
BsaBI	GATNNNNATC	2 cut(s)	1689, 2430
BsaI	GGTCTC	1 cut(s)	2081
BsaJI	CCNNGG	6 cut(s)	17, 251, 826, 1770, 2334, 2545
BsaWI	WCCGGW	3 cut(s)	1213, 1645, 3077
BsaXI	ACNNNNNCTCC	4 cut(s)	2282, 2312, 3434, 3464
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 767, 1834, 3304, 3500
Bse3DI	GCAATG	4 cut(s)	786, 793, 1159, 3403
Bse8I	GATNNNNATC	2 cut(s)	1689, 2430
BseAI	TCCGGA	2 cut(s)	1213, 1645
BseBI	CCWGG	7 cut(s)	150, 827, 1829, 1854, 1980, 2615, 3000
BseDI	CCNNGG	6 cut(s)	17, 251, 826, 1770, 2334, 2545
BseJI	GATNNNNATC	2 cut(s)	1689, 2430
BseLI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 767, 1834, 3304, 3500
BseMI	GCAATG	4 cut(s)	786, 793, 1159, 3403
BseMII	CTCAG	7 cut(s)	313, 405, 1377, 2025, 2583, 2635, 3137
BseRI	GAGGAG	4 cut(s)	240, 438, 639, 1481
BseSI	GKGCMC	1 cut(s)	833
BseXI	GCAGC	6 cut(s)	292, 490, 691, 868, 1852, 3454
BseYI	CCCAGC	1 cut(s)	1254
BsgI	GTGCAG	2 cut(s)	2997, 3113
Bsh1236I	CGCG	2 cut(s)	19, 111
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 1593, 2220, 2613, 3003, 3069, 3237
BshNI	GGYRCC	2 cut(s)	2029, 2890
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	2 cut(s)	1165, 1769
BsiSI	CCGG	7 cut(s)	65, 71, 87, 848, 1214, 1646, 3078
BslFI	GGGAC	2 cut(s)	1018, 1089
BslI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 767, 1834, 3304, 3500
BsmAI	GTCTC	7 cut(s)	959, 1098, 2001, 2081, 2126, 2772, 3518
BsmBI	CGTCTC	1 cut(s)	2772
BsmFI	GGGAC	2 cut(s)	1018, 1089
BsnI	GGCC	7 cut(s)	27, 1593, 2220, 2613, 3003, 3069, 3237
Bso31I	GGTCTC	1 cut(s)	2081
BsoBI	CYCGRG	2 cut(s)	1165, 1769
Bsp119I	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
Bsp1286I	GDGCHC	3 cut(s)	420, 833, 1255
Bsp13I	TCCGGA	2 cut(s)	1213, 1645
Bsp1407I	TGTACA	3 cut(s)	1244, 3022, 3190
BspACI	CCGC	8 cut(s)	14, 17, 19, 109, 823, 972, 1577, 2170
BspANI	GGCC	7 cut(s)	27, 1593, 2220, 2613, 3003, 3069, 3237
BspCNI	CTCAG	7 cut(s)	312, 406, 1378, 2024, 2584, 2634, 3136
BspEI	TCCGGA	2 cut(s)	1213, 1645
BspFNI	CGCG	2 cut(s)	19, 111
BspHI	TCATGA	6 cut(s)	322, 520, 721, 907, 1395, 3130
BspLI	GGNNCC	9 cut(s)	69, 846, 1252, 1557, 1656, 1839, 2031, 2892, 3444
BspMAI	CTGCAG	1 cut(s)	2653
BspMI	ACCTGC	2 cut(s)	2175, 2642
BspOI	GCTAGC	1 cut(s)	813
BspQI	GCTCTTC	2 cut(s)	2842, 3450
BspT104I	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
BspT107I	GGYRCC	2 cut(s)	2029, 2890
BspTNI	GGTCTC	1 cut(s)	2081
BsrDI	GCAATG	4 cut(s)	786, 793, 1159, 3403
BsrGI	TGTACA	3 cut(s)	1244, 3022, 3190
BssECI	CCNNGG	6 cut(s)	17, 251, 826, 1770, 2334, 2545
BssNAI	GTATAC	3 cut(s)	258, 456, 657
Bst1107I	GTATAC	3 cut(s)	258, 456, 657
Bst2UI	CCWGG	7 cut(s)	150, 827, 1829, 1854, 1980, 2615, 3000
Bst6I	CTCTTC	9 cut(s)	45, 261, 459, 660, 834, 1116, 2103, 2842, 3450
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstAUI	TGTACA	3 cut(s)	1244, 3022, 3190
BstBAI	YACGTR	1 cut(s)	3054
BstBI	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
BstDEI	CTNAG	9 cut(s)	299, 414, 814, 1386, 2011, 2582, 2592, 2621, 3123
BstDSI	CCRYGG	2 cut(s)	17, 2545
BstENI	CCTNNNNNAGG	3 cut(s)	390, 765, 1832
BstFNI	CGCG	2 cut(s)	19, 111
BstHHI	GCGC	2 cut(s)	11, 2352
BstMAI	GTCTC	7 cut(s)	959, 1098, 2001, 2081, 2126, 2772, 3518
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	7 cut(s)	150, 827, 1829, 1854, 1980, 2615, 3000
BstNSI	RCATGY	2 cut(s)	1527, 3314
BstPAI	GACNNNNGTC	2 cut(s)	318, 717
BstSCI	CCNGG	9 cut(s)	63, 69, 148, 825, 1827, 1852, 1978, 2613, 2998
BstSFI	CTRYAG	1 cut(s)	2649
BstSLI	GKGCMC	1 cut(s)	833
BstUI	CGCG	2 cut(s)	19, 111
BstV1I	GCAGC	6 cut(s)	292, 490, 691, 868, 1852, 3454
BstV2I	GAAGAC	1 cut(s)	3384
BstX2I	RGATCY	6 cut(s)	844, 1546, 1654, 1837, 2492, 3101
BstXI	CCANNNNNNTGG	1 cut(s)	2711
BstYI	RGATCY	6 cut(s)	844, 1546, 1654, 1837, 2492, 3101
BstZ17I	GTATAC	3 cut(s)	258, 456, 657
BsuRI	GGCC	7 cut(s)	27, 1593, 2220, 2613, 3003, 3069, 3237
BtgI	CCRYGG	2 cut(s)	17, 2545
BtsI	GCAGTG	2 cut(s)	805, 2428
BveI	ACCTGC	2 cut(s)	2175, 2642
CaiI	CAGNNNCTG	3 cut(s)	968, 1073, 3452
CciI	TCATGA	6 cut(s)	322, 520, 721, 907, 1395, 3130
CfoI	GCGC	2 cut(s)	11, 2352
Cfr13I	GGNCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	1 cut(s)	2789
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	8 cut(s)	1083, 1143, 1245, 1412, 2030, 3023, 3191, 3402
CspCI	CAANNNNNGTGG	4 cut(s)	1273, 1308, 1881, 1916
CviQI	GTAC	8 cut(s)	1083, 1143, 1245, 1412, 2030, 3023, 3191, 3402
DdeI	CTNAG	9 cut(s)	299, 414, 814, 1386, 2011, 2582, 2592, 2621, 3123
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	1591
Eam1104I	CTCTTC	9 cut(s)	45, 261, 459, 660, 834, 1116, 2103, 2842, 3450
EarI	CTCTTC	9 cut(s)	45, 261, 459, 660, 834, 1116, 2103, 2842, 3450
Eco147I	AGGCCT	2 cut(s)	27, 2613
Eco24I	GRGCYC	1 cut(s)	1255
Eco31I	GGTCTC	1 cut(s)	2081
Eco47I	GGWCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
Eco57I	CTGAAG	3 cut(s)	2970, 3300, 3474
Eco72I	CACGTG	1 cut(s)	3054
Eco88I	CYCGRG	2 cut(s)	1165, 1769
EcoNI	CCTNNNNNAGG	3 cut(s)	390, 765, 1832
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	7 cut(s)	148, 825, 1827, 1852, 1978, 2613, 2998
EcoT22I	ATGCAT	1 cut(s)	2914
EcoT38I	GRGCYC	1 cut(s)	1255
Esp3I	CGTCTC	1 cut(s)	2772
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 657, 689
FaqI	GGGAC	2 cut(s)	1018, 1089
FauI	CCCGC	1 cut(s)	830
FauNDI	CATATG	1 cut(s)	2209
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	4 cut(s)	36, 257, 455, 656
Fnu4HI	GCNGC	8 cut(s)	17, 109, 306, 504, 705, 882, 1866, 3468
FriOI	GRGCYC	1 cut(s)	1255
Fsp4HI	GCNGC	8 cut(s)	17, 109, 306, 504, 705, 882, 1866, 3468
FspBI	CTAG	5 cut(s)	105, 810, 1992, 2240, 3227
GlaI	GCGC	2 cut(s)	10, 2351
GluI	GCNGC	8 cut(s)	17, 109, 306, 504, 705, 882, 1866, 3468
GsaI	CCCAGC	1 cut(s)	1258
GsuI	CTGGAG	4 cut(s)	700, 2204, 2769, 3477
HaeIII	GGCC	7 cut(s)	27, 1593, 2220, 2613, 3003, 3069, 3237
HapII	CCGG	7 cut(s)	65, 71, 87, 848, 1214, 1646, 3078
HgaI	GACGC	1 cut(s)	2789
HhaI	GCGC	2 cut(s)	11, 2352
Hin6I	GCGC	2 cut(s)	9, 2350
HinP1I	GCGC	2 cut(s)	9, 2350
HincII	GTYRAC	6 cut(s)	211, 409, 610, 1263, 3385, 3499
HindII	GTYRAC	6 cut(s)	211, 409, 610, 1263, 3385, 3499
HpaI	GTTAAC	1 cut(s)	1263
HpaII	CCGG	7 cut(s)	65, 71, 87, 848, 1214, 1646, 3078
HphI	GGTGA	3 cut(s)	981, 1994, 3098
Hpy99I	CGWCG	2 cut(s)	50, 1622
HpyAV	CCTTC	8 cut(s)	124, 1047, 1276, 2340, 2689, 2945, 3110, 3128
HpyCH4IV	ACGT	6 cut(s)	168, 558, 1188, 1876, 3053, 3381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	9 cut(s)	299, 414, 814, 1386, 2011, 2582, 2592, 2621, 3123
HpySE526I	ACGT	6 cut(s)	168, 558, 1188, 1876, 3053, 3381
HspAI	GCGC	2 cut(s)	9, 2350
Kpn2I	TCCGGA	2 cut(s)	1213, 1645
KpnI	GGTACC	1 cut(s)	2033
Ksp22I	TGATCA	1 cut(s)	790
KspAI	GTTAAC	1 cut(s)	1263
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	2842, 3450
LmnI	GCTCC	6 cut(s)	988, 1250, 2185, 2266, 2714, 3442
Lsp1109I	GCAGC	6 cut(s)	292, 490, 691, 868, 1852, 3454
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	5 cut(s)	105, 810, 1992, 2240, 3227
MaeII	ACGT	6 cut(s)	168, 558, 1188, 1876, 3053, 3381
MaeIII	GTNAC	6 cut(s)	1043, 1500, 2565, 3049, 3274, 3435
MfeI	CAATTG	4 cut(s)	261, 459, 660, 1116
MflI	RGATCY	6 cut(s)	844, 1546, 1654, 1837, 2492, 3101
MhlI	GDGCHC	3 cut(s)	420, 833, 1255
MlsI	TGGCCA	1 cut(s)	1593
MluNI	TGGCCA	1 cut(s)	1593
MlyI	GAGTC	9 cut(s)	506, 707, 913, 1100, 1951, 2003, 2554, 3443, 3458
MmeI	TCCRAC	6 cut(s)	169, 1518, 1897, 1984, 3152, 3295
Mox20I	TGGCCA	1 cut(s)	1593
Mph1103I	ATGCAT	1 cut(s)	2914
MroI	TCCGGA	2 cut(s)	1213, 1645
MroXI	GAANNNNTTC	1 cut(s)	2631
MscI	TGGCCA	1 cut(s)	1593
MseI	TTAA	5 cut(s)	1262, 1716, 2025, 2310, 2369
MslI	CAYNNNNRTG	6 cut(s)	225, 798, 1028, 1980, 2709, 3056
Msp20I	TGGCCA	1 cut(s)	1593
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	7 cut(s)	65, 71, 87, 848, 1214, 1646, 3078
MspR9I	CCNGG	9 cut(s)	65, 71, 150, 827, 1829, 1854, 1980, 2615, 3000
MunI	CAATTG	4 cut(s)	261, 459, 660, 1116
MvaI	CCWGG	7 cut(s)	150, 827, 1829, 1854, 1980, 2615, 3000
MvnI	CGCG	2 cut(s)	19, 111
MwoI	GCNNNNNNNGC	1 cut(s)	387
NciI	CCSGG	2 cut(s)	65, 71
NdeI	CATATG	1 cut(s)	2209
NheI	GCTAGC	1 cut(s)	809
NlaIV	GGNNCC	9 cut(s)	69, 846, 1252, 1557, 1656, 1839, 2031, 2892, 3444
NmuCI	GTSAC	3 cut(s)	1500, 3049, 3435
NsiI	ATGCAT	1 cut(s)	2914
NspI	RCATGY	2 cut(s)	1527, 3314
NspV	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
OliI	CACNNNNGTG	2 cut(s)	225, 3056
PagI	TCATGA	6 cut(s)	322, 520, 721, 907, 1395, 3130
PceI	AGGCCT	2 cut(s)	27, 2613
PciSI	GCTCTTC	2 cut(s)	2842, 3450
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2631
PfeI	GAWTC	6 cut(s)	818, 1490, 1583, 1762, 2051, 2550
PflFI	GACNNNGTC	3 cut(s)	71, 746, 3047
PfoI	TCCNGGA	1 cut(s)	63
PkrI	GCNGC	8 cut(s)	18, 110, 307, 505, 706, 883, 1867, 3469
PleI	GAGTC	9 cut(s)	506, 707, 912, 1099, 1951, 2003, 2554, 3442, 3457
PmaCI	CACGTG	1 cut(s)	3054
PmlI	CACGTG	1 cut(s)	3054
PpsI	GAGTC	9 cut(s)	506, 707, 912, 1099, 1951, 2003, 2554, 3442, 3457
Ppu21I	YACGTR	1 cut(s)	3054
PshAI	GACNNNNGTC	2 cut(s)	318, 717
PshBI	ATTAAT	1 cut(s)	2369
Psp1406I	AACGTT	2 cut(s)	168, 558
Psp6I	CCWGG	7 cut(s)	148, 825, 1827, 1852, 1978, 2613, 2998
PspCI	CACGTG	1 cut(s)	3054
PspFI	CCCAGC	1 cut(s)	1254
PspGI	CCWGG	7 cut(s)	148, 825, 1827, 1852, 1978, 2613, 2998
PspN4I	GGNNCC	9 cut(s)	69, 846, 1252, 1557, 1656, 1839, 2031, 2892, 3444
PspPI	GGNCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
PstI	CTGCAG	1 cut(s)	2653
PstNI	CAGNNNCTG	3 cut(s)	968, 1073, 3452
PsuI	RGATCY	6 cut(s)	844, 1546, 1654, 1837, 2492, 3101
PsyI	GACNNNGTC	3 cut(s)	71, 746, 3047
RsaI	GTAC	8 cut(s)	1084, 1144, 1246, 1413, 2031, 3024, 3192, 3403
RsaNI	GTAC	8 cut(s)	1083, 1143, 1245, 1412, 2030, 3023, 3191, 3402
RseI	CAYNNNNRTG	6 cut(s)	225, 798, 1028, 1980, 2709, 3056
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	2842, 3450
SaqAI	TTAA	5 cut(s)	1262, 1716, 2025, 2310, 2369
SatI	GCNGC	8 cut(s)	17, 109, 306, 504, 705, 882, 1866, 3468
Sau96I	GGNCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
SchI	GAGTC	9 cut(s)	506, 707, 913, 1100, 1951, 2003, 2554, 3443, 3458
ScrFI	CCNGG	9 cut(s)	65, 71, 150, 827, 1829, 1854, 1980, 2615, 3000
SduI	GDGCHC	3 cut(s)	420, 833, 1255
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	2649
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	8 cut(s)	128, 155, 344, 545, 1813, 1911, 2682, 2840
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
SmiMI	CAYNNNNRTG	6 cut(s)	225, 798, 1028, 1980, 2709, 3056
SmlI	CTYRAG	2 cut(s)	2345, 2535
SmoI	CTYRAG	2 cut(s)	2345, 2535
SseBI	AGGCCT	2 cut(s)	27, 2613
SsiI	CCGC	8 cut(s)	14, 17, 19, 109, 823, 972, 1577, 2170
SspI	AATATT	1 cut(s)	1541
SspMI	CTAG	5 cut(s)	105, 810, 1992, 2240, 3227
StuI	AGGCCT	2 cut(s)	27, 2613
StyD4I	CCNGG	9 cut(s)	63, 69, 148, 825, 1827, 1852, 1978, 2613, 2998
TaiI	ACGT	6 cut(s)	171, 561, 1191, 1879, 3056, 3384
TaqII	GACCGA	1 cut(s)	2937
TatI	WGTACW	5 cut(s)	1082, 1244, 1411, 3022, 3190
TauI	GCSGC	2 cut(s)	19, 111
TfiI	GAWTC	6 cut(s)	818, 1490, 1583, 1762, 2051, 2550
Tru1I	TTAA	5 cut(s)	1262, 1716, 2025, 2310, 2369
Tru9I	TTAA	5 cut(s)	1262, 1716, 2025, 2310, 2369
TseFI	GTSAC	3 cut(s)	1500, 3049, 3435
TseI	GCWGC	6 cut(s)	305, 503, 704, 881, 1865, 3467
Tsp45I	GTSAC	3 cut(s)	1500, 3049, 3435
TspGWI	ACGGA	3 cut(s)	1397, 2562, 3162
Tth111I	GACNNNGTC	3 cut(s)	71, 746, 3047
VpaK11BI	GGWCC	6 cut(s)	67, 115, 784, 2996, 3164, 3295
VspI	ATTAAT	1 cut(s)	2369
XagI	CCTNNNNNAGG	3 cut(s)	390, 765, 1832
XapI	RAATTY	8 cut(s)	80, 124, 695, 896, 1327, 1612, 2627, 3354
XbaI	TCTAGA	1 cut(s)	2239
XceI	RCATGY	2 cut(s)	1527, 3314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmiI	GTMKAC	4 cut(s)	36, 257, 455, 656
XmnI	GAANNNNTTC	1 cut(s)	2631
XspI	CTAG	5 cut(s)	105, 810, 1992, 2240, 3227
Zsp2I	ATGCAT	1 cut(s)	2914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.