Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003720.1

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

143607 .. 156522

Gene Structure 12916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003720.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3468 bp

atgaatagcgcaccgccgcggagaggcctcgaagtctacgatttcgtcgaagaggacgagttcccggacccggtcgtcaaattttccggcaaactcaaaaaccctagccgcgaggaccatcggaattcgaaggacgagtttctccaacctggtttgaaagaagccaacgttcaagccaaagaaatcagtagcataccttatgtagaagttgacactgaccactgttgtgaaaatgctatttctcattctcctcggtatacaattgaagagaggcttgccatcataaatgatttgaaactcagtgctgctacagactccagtcatgaacaatctgatttatgttcgaaagaagccaacattcaagccaaagaaatcagtagcataccttgcgtaggtgttgatgaagttgacactgaccactgttgtaaagatgctatttctcattctcctctgtttacaattgaagagaggcgtgctatcataaacgatttgaaattgagcgctgccacagacttcaatcatgaacaacaatctgatttatgtgttgatgaagttgacactgaccactgttgtaaaaatgctatttctcattctcctctgtatacaattgaagagaggcttgctatcataaacgatttgaaattgagtgctgccacagactccagtcatgaacaacaatctgatttggacaaagtcagtagcataccttatgcaggggttgatgcaatggaccatgatcattgcagtgacagtgctagcttagattcccgcctgcgcacaatggaagaggatccggctacgaaaaaggattatgtggaattggatgctgctacacaatccaaatttttgagtcatgaacagcagtctgaattagatgacaatggacgcagaaagtttctttctgaaacagtgactggcggttcagatgctccctcacctcccccccagacaagccagttagactgtggcattacagtgtccccttccagtaacgacccagttgatgttatttcagatgctgatgaaagcacaagtgagtctccatcaagttccctatccccaattgaagagaatgatggttctttgggtacttatgaattgggtcattgctcgggcaattttgaaatggataacgtaaatatgacagttgttctttatccggattatgttgtctatggggatagttattgtacaggagcccagcagttaaccttctctcacagttgcatcaaaatcagtggtttagcaccgtctgaaaacgacaaaactttgaattttgaatggggagttgatgatcttgtcaatgttgagtgtcagtgggttcaaaatgctgagtttgtcatgataaaactccgtgtactatcaagggatgcagatggagatgatgatgcacttggtatttcaggcattgaggagttgaagattggagttgttgaatccaactggtcacagcaacaagaaagaatagcatgtttgaatgataaatatttggatctattggaaccagtacaaatcatggaagcggacgattcacttggccagaggcatcattttccaaatttcgacgaggattttgaaactgttgtatatccggagggggatcctgatgctgtttccatcagtaagagagatgttgatctcttacagccagagatatttattaacgatacattgatcgacttctatatcaagtatttggaaaatcggattcaacccgaggaaaagcacaggttctactttttcaatagttttttctttcgaaagctggctgacctggacaaggatccatccagtgttcctggtggcagggctgctttccaacgtgttcggaaatggacaaggaaagtggatttgttcgaaaaggattacatcttcatccctgtaaacttcaatctacactggactctaattgttatatgtcatcctggtgaagtgcctagatataaggttggagactcaggcaagtcagttaaggtaccttgtatattgcacttggattctctcaaaggaagtcatacaggtctcaaaaatcatgttcaaagttatttgtgggaagagtggaaagaaaagaaaaaggagacatcagaagaaatctcatcaaacttccacaacctgcggtttctctcactggagctaccacaacaggaaaatacatatgattgtggcctgtttttgcttcactatctagagctgtttttggaagaagctcctgctatcttcaatccgttcaacataaacaagttctccacctttcttaatgcaaattggtttcttccttccgaggcttctctcaagcgcactcttatccagagattaatttttgatctcattgaaaatcgttatcgggaagtctgtttgccagcttgcagtgatggagatcaggctaaatatcagggatgtaatcagcttgaaataggtgcaaagtttctttctggaagatccagtcctgcaatagcttgccaagaaaatatatcaacttctcaagcagaccacggaatcgaaatgactctgttacccacatcttctcttaggagttctgagtgtgttagtgatgcaggcctggttctcagggaattttttcagtcaggagaaactgcaggttcactatttggacaatatcaatccttcgaacagaaatcgcctttttaccatcctaatggagctacaccaccagtagaggaagaaacccaaactggagagcagtttacctatctggctacgggagacgctggctttcaagagatgtctgcaatcacatctcaaacttgtggtattcaatgctcttcgaaatcttatggagttgagagttcgtataacgtggggatgtctgaacaggcaccaaatggaaacattgatgcatcccctgaccgatcagtttgtgcctctgatctttctgaaggcatagagatcattgaaaatggtgcagttagagaagatttaggtcccggccagaaagaagaaagggatgtacaaaattatccatcattggacagtgtcacgtgtgtggtagatggccttgtttctggtttgggtgaggtgcagagcagatccttgattgaagaaggttctcaggatcatgaaggggtgcatgacggacttgaaaatggaggtccaagtcggaaagaagaaagggatgtacagacccatccatcaacagaagatgtcttgtgtctagcagatggccttgtatctggttcaggcaatatgcagaacacttctgttactgaagaaagttctctggaccaaaaaaaggtgcatgttggaaatgaaaatagaggttcacttccctcatcccaagaaatttctgatacacccgttcttgaagacgttgacatggtaggcaatggtacaatctcatgtgataatggtttggtgggcgagtcacaggagccagagtctgaagagcaacgagctgcaaaaagaatgaggcttacacctccagttgaaggggaaaaatgtctcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1155

Amino Acids

128.16

Weight (kDa)

4.49

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc16I	TGCGCA	1 cut(s)	776
Acc36I	ACCTGC	2 cut(s)	2121, 2588
Acc65I	GGTACC	1 cut(s)	1975
AccB1I	GGYRCC	2 cut(s)	1975, 2836
AccI	GTMKAC	3 cut(s)	36, 257, 602
AccII	CGCG	2 cut(s)	19, 111
AccIII	TCCGGA	2 cut(s)	1159, 1591
AciI	CCGC	8 cut(s)	14, 17, 19, 109, 769, 918, 1523, 2116
AclI	AACGTT	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	1537, 2947
AcsI	RAATTY	7 cut(s)	80, 124, 842, 1273, 1558, 2573, 3300
AcuI	CTGAAG	3 cut(s)	2916, 3246, 3420
AcvI	CACGTG	1 cut(s)	3000
AfaI	GTAC	8 cut(s)	1090, 1192, 1359, 1509, 1977, 2970, 3138, 3349
AfeI	AGCGCT	1 cut(s)	502
AfiI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 713, 1780, 3250, 3446
AflIII	ACRYGT	2 cut(s)	1822, 2999
AjnI	CCWGG	5 cut(s)	148, 1773, 1798, 1924, 2559
AleI	CACNNNNGTG	2 cut(s)	225, 3002
Alw26I	GTCTC	6 cut(s)	1044, 1947, 2027, 2072, 2718, 3464
AlwNI	CAGNNNCTG	3 cut(s)	914, 1019, 3398
Ama87I	CYCGRG	2 cut(s)	1111, 1715
Aor13HI	TCCGGA	2 cut(s)	1159, 1591
Aor51HI	AGCGCT	1 cut(s)	502
AoxI	GGCC	7 cut(s)	25, 1537, 2164, 2557, 2947, 3013, 3181
ApeKI	GCWGC	6 cut(s)	305, 503, 650, 827, 1811, 3413
ApoI	RAATTY	7 cut(s)	80, 124, 842, 1273, 1558, 2573, 3300
ArsI	GACNNNNNNTTYG	2 cut(s)	1556, 1588
AseI	ATTAAT	1 cut(s)	2315
Asp700I	GAANNNNTTC	1 cut(s)	2577
Asp718I	GGTACC	1 cut(s)	1975
AspLEI	GCGC	4 cut(s)	11, 503, 777, 2298
AspS9I	GGNCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
AsuC2I	CCSGG	3 cut(s)	65, 71, 2946
AsuHPI	GGTGA	3 cut(s)	927, 1940, 3044
AsuII	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
AsuNHI	GCTAGC	1 cut(s)	755
AvaI	CYCGRG	2 cut(s)	1111, 1715
AvaII	GGWCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
BaeI	ACNNNNGTAYC	2 cut(s)	3300, 3333
BalI	TGGCCA	1 cut(s)	1539
BamHI	GGATCC	3 cut(s)	790, 1600, 1783
BanI	GGYRCC	2 cut(s)	1975, 2836
BanII	GRGCYC	1 cut(s)	1201
BbrPI	CACGTG	1 cut(s)	3000
BbsI	GAAGAC	1 cut(s)	3330
BbvI	GCAGC	6 cut(s)	292, 490, 637, 814, 1798, 3400
BciT130I	CCWGG	5 cut(s)	150, 1775, 1800, 1926, 2561
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	3 cut(s)	65, 71, 2946
BcoDI	GTCTC	6 cut(s)	1044, 1947, 2027, 2072, 2718, 3464
BfaI	CTAG	5 cut(s)	105, 756, 1938, 2186, 3173
BfmI	CTRYAG	2 cut(s)	309, 2595
BfoI	RGCGCY	1 cut(s)	504
BfuAI	ACCTGC	2 cut(s)	2121, 2588
BisI	GCNGC	8 cut(s)	17, 109, 306, 504, 651, 828, 1812, 3414
BlsI	GCNGC	8 cut(s)	18, 110, 307, 505, 652, 829, 1813, 3415
Bme1390I	CCNGG	8 cut(s)	65, 71, 150, 1775, 1800, 1926, 2561, 2946
Bme18I	GGWCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
BmeT110I	CYCGRG	2 cut(s)	1111, 1715
BmgT120I	GGNCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
BmrFI	CCNGG	8 cut(s)	65, 71, 150, 1775, 1800, 1926, 2561, 2946
BmrI	ACTGGG	1 cut(s)	992
BmtI	GCTAGC	1 cut(s)	759
BmuI	ACTGGG	1 cut(s)	992
BoxI	GACNNNNGTC	2 cut(s)	318, 663
BpiI	GAAGAC	1 cut(s)	3330
BpmI	CTGGAG	5 cut(s)	301, 646, 2150, 2715, 3423
Bpu14I	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
BpuEI	CTTGAG	2 cut(s)	2276, 2466
BpuMI	CCSGG	3 cut(s)	65, 71, 2946
BsaAI	YACGTR	1 cut(s)	3000
BsaBI	GATNNNNATC	2 cut(s)	1635, 2376
BsaI	GGTCTC	1 cut(s)	2027
BsaJI	CCNNGG	5 cut(s)	17, 251, 1716, 2280, 2491
BsaWI	WCCGGW	2 cut(s)	1159, 1591
BsaXI	ACNNNNNCTCC	4 cut(s)	2228, 2258, 3380, 3410
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 713, 1780, 3250, 3446
Bse3DI	GCAATG	4 cut(s)	732, 739, 1105, 3349
Bse8I	GATNNNNATC	2 cut(s)	1635, 2376
BseAI	TCCGGA	2 cut(s)	1159, 1591
BseBI	CCWGG	5 cut(s)	150, 1775, 1800, 1926, 2561
BseDI	CCNNGG	5 cut(s)	17, 251, 1716, 2280, 2491
BseJI	GATNNNNATC	2 cut(s)	1635, 2376
BseLI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 713, 1780, 3250, 3446
BseMI	GCAATG	4 cut(s)	732, 739, 1105, 3349
BseMII	CTCAG	6 cut(s)	313, 1323, 1971, 2529, 2581, 3083
BseRI	GAGGAG	4 cut(s)	240, 438, 585, 1427
BseXI	GCAGC	6 cut(s)	292, 490, 637, 814, 1798, 3400
BseYI	CCCAGC	1 cut(s)	1200
BsgI	GTGCAG	2 cut(s)	2943, 3059
Bsh1236I	CGCG	2 cut(s)	19, 111
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 1539, 2166, 2559, 2949, 3015, 3183
BshNI	GGYRCC	2 cut(s)	1975, 2836
BsiEI	CGRYCG	1 cut(s)	75
BsiHKCI	CYCGRG	2 cut(s)	1111, 1715
BsiSI	CCGG	7 cut(s)	65, 71, 87, 794, 1160, 1592, 2946
BslFI	GGGAC	2 cut(s)	964, 2928
BslI	CCNNNNNNNGG	7 cut(s)	23, 70, 392, 713, 1780, 3250, 3446
BsmAI	GTCTC	6 cut(s)	1044, 1947, 2027, 2072, 2718, 3464
BsmBI	CGTCTC	1 cut(s)	2718
BsmFI	GGGAC	2 cut(s)	964, 2928
BsnI	GGCC	7 cut(s)	27, 1539, 2166, 2559, 2949, 3015, 3183
Bso31I	GGTCTC	1 cut(s)	2027
BsoBI	CYCGRG	2 cut(s)	1111, 1715
Bsp119I	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
Bsp1286I	GDGCHC	1 cut(s)	1201
Bsp13I	TCCGGA	2 cut(s)	1159, 1591
Bsp1407I	TGTACA	3 cut(s)	1190, 2968, 3136
BspACI	CCGC	8 cut(s)	14, 17, 19, 109, 769, 918, 1523, 2116
BspANI	GGCC	7 cut(s)	27, 1539, 2166, 2559, 2949, 3015, 3183
BspCNI	CTCAG	6 cut(s)	312, 1324, 1970, 2530, 2580, 3082
BspEI	TCCGGA	2 cut(s)	1159, 1591
BspFNI	CGCG	2 cut(s)	19, 111
BspHI	TCATGA	6 cut(s)	322, 520, 667, 853, 1341, 3076
BspMAI	CTGCAG	1 cut(s)	2599
BspMI	ACCTGC	2 cut(s)	2121, 2588
BspOI	GCTAGC	1 cut(s)	759
BspQI	GCTCTTC	2 cut(s)	2788, 3396
BspT104I	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
BspT107I	GGYRCC	2 cut(s)	1975, 2836
BspTNI	GGTCTC	1 cut(s)	2027
BsrDI	GCAATG	4 cut(s)	732, 739, 1105, 3349
BsrGI	TGTACA	3 cut(s)	1190, 2968, 3136
BssECI	CCNNGG	5 cut(s)	17, 251, 1716, 2280, 2491
BssNAI	GTATAC	2 cut(s)	258, 603
Bst1107I	GTATAC	2 cut(s)	258, 603
Bst2UI	CCWGG	5 cut(s)	150, 1775, 1800, 1926, 2561
Bst6I	CTCTTC	9 cut(s)	45, 261, 459, 606, 780, 1062, 2049, 2788, 3396
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstAUI	TGTACA	3 cut(s)	1190, 2968, 3136
BstBAI	YACGTR	1 cut(s)	3000
BstBI	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
BstDEI	CTNAG	8 cut(s)	299, 760, 1332, 1957, 2528, 2538, 2567, 3069
BstDSI	CCRYGG	2 cut(s)	17, 2491
BstENI	CCTNNNNNAGG	3 cut(s)	390, 711, 1778
BstFNI	CGCG	2 cut(s)	19, 111
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	4 cut(s)	11, 503, 777, 2298
BstMAI	GTCTC	6 cut(s)	1044, 1947, 2027, 2072, 2718, 3464
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	5 cut(s)	150, 1775, 1800, 1926, 2561
BstNSI	RCATGY	2 cut(s)	1473, 3260
BstPAI	GACNNNNGTC	2 cut(s)	318, 663
BstSCI	CCNGG	8 cut(s)	63, 69, 148, 1773, 1798, 1924, 2559, 2944
BstSFI	CTRYAG	2 cut(s)	309, 2595
BstUI	CGCG	2 cut(s)	19, 111
BstV1I	GCAGC	6 cut(s)	292, 490, 637, 814, 1798, 3400
BstV2I	GAAGAC	1 cut(s)	3330
BstX2I	RGATCY	6 cut(s)	790, 1492, 1600, 1783, 2438, 3047
BstXI	CCANNNNNNTGG	1 cut(s)	2657
BstYI	RGATCY	6 cut(s)	790, 1492, 1600, 1783, 2438, 3047
BstZ17I	GTATAC	2 cut(s)	258, 603
BsuRI	GGCC	7 cut(s)	27, 1539, 2166, 2559, 2949, 3015, 3183
BtgI	CCRYGG	2 cut(s)	17, 2491
BtsI	GCAGTG	2 cut(s)	751, 2374
BveI	ACCTGC	2 cut(s)	2121, 2588
CaiI	CAGNNNCTG	3 cut(s)	914, 1019, 3398
CciI	TCATGA	6 cut(s)	322, 520, 667, 853, 1341, 3076
CfoI	GCGC	4 cut(s)	11, 503, 777, 2298
Cfr13I	GGNCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	2 cut(s)	894, 2735
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	8 cut(s)	1089, 1191, 1358, 1508, 1976, 2969, 3137, 3348
CspCI	CAANNNNNGTGG	4 cut(s)	1219, 1254, 1827, 1862
CviQI	GTAC	8 cut(s)	1089, 1191, 1358, 1508, 1976, 2969, 3137, 3348
DdeI	CTNAG	8 cut(s)	299, 760, 1332, 1957, 2528, 2538, 2567, 3069
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	2 cut(s)	1537, 2947
Eam1104I	CTCTTC	9 cut(s)	45, 261, 459, 606, 780, 1062, 2049, 2788, 3396
EarI	CTCTTC	9 cut(s)	45, 261, 459, 606, 780, 1062, 2049, 2788, 3396
Eco147I	AGGCCT	2 cut(s)	27, 2559
Eco24I	GRGCYC	1 cut(s)	1201
Eco31I	GGTCTC	1 cut(s)	2027
Eco47I	GGWCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
Eco47III	AGCGCT	1 cut(s)	502
Eco57I	CTGAAG	3 cut(s)	2916, 3246, 3420
Eco72I	CACGTG	1 cut(s)	3000
Eco88I	CYCGRG	2 cut(s)	1111, 1715
EcoNI	CCTNNNNNAGG	3 cut(s)	390, 711, 1778
EcoO109I	RGGNCCY	1 cut(s)	2942
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	5 cut(s)	148, 1773, 1798, 1924, 2559
EcoT22I	ATGCAT	1 cut(s)	2860
EcoT38I	GRGCYC	1 cut(s)	1201
Esp3I	CGTCTC	1 cut(s)	2718
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 603, 635
FaqI	GGGAC	2 cut(s)	964, 2928
FauI	CCCGC	1 cut(s)	776
FauNDI	CATATG	1 cut(s)	2155
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	3 cut(s)	36, 257, 602
Fnu4HI	GCNGC	8 cut(s)	17, 109, 306, 504, 651, 828, 1812, 3414
FriOI	GRGCYC	1 cut(s)	1201
Fsp4HI	GCNGC	8 cut(s)	17, 109, 306, 504, 651, 828, 1812, 3414
FspBI	CTAG	5 cut(s)	105, 756, 1938, 2186, 3173
FspI	TGCGCA	1 cut(s)	776
GlaI	GCGC	4 cut(s)	10, 502, 776, 2297
GluI	GCNGC	8 cut(s)	17, 109, 306, 504, 651, 828, 1812, 3414
GsaI	CCCAGC	1 cut(s)	1204
GsuI	CTGGAG	5 cut(s)	301, 646, 2150, 2715, 3423
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	7 cut(s)	27, 1539, 2166, 2559, 2949, 3015, 3183
HapII	CCGG	7 cut(s)	65, 71, 87, 794, 1160, 1592, 2946
HgaI	GACGC	2 cut(s)	894, 2735
HhaI	GCGC	4 cut(s)	11, 503, 777, 2298
Hin6I	GCGC	4 cut(s)	9, 501, 775, 2296
HinP1I	GCGC	4 cut(s)	9, 501, 775, 2296
HincII	GTYRAC	5 cut(s)	211, 409, 556, 1209, 3331
HindII	GTYRAC	5 cut(s)	211, 409, 556, 1209, 3331
HpaI	GTTAAC	1 cut(s)	1209
HpaII	CCGG	7 cut(s)	65, 71, 87, 794, 1160, 1592, 2946
HphI	GGTGA	3 cut(s)	927, 1940, 3044
Hpy99I	CGWCG	2 cut(s)	50, 1568
HpyAV	CCTTC	9 cut(s)	124, 993, 1222, 2286, 2635, 2891, 3056, 3074, 3440
HpyCH4IV	ACGT	6 cut(s)	168, 1134, 1822, 2817, 2999, 3327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	8 cut(s)	299, 760, 1332, 1957, 2528, 2538, 2567, 3069
HpySE526I	ACGT	6 cut(s)	168, 1134, 1822, 2817, 2999, 3327
HspAI	GCGC	4 cut(s)	9, 501, 775, 2296
Kpn2I	TCCGGA	2 cut(s)	1159, 1591
KpnI	GGTACC	1 cut(s)	1979
Ksp22I	TGATCA	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	1209
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	2788, 3396
LmnI	GCTCC	6 cut(s)	934, 1196, 2131, 2212, 2660, 3388
Lsp1109I	GCAGC	6 cut(s)	292, 490, 637, 814, 1798, 3400
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	5 cut(s)	105, 756, 1938, 2186, 3173
MaeII	ACGT	6 cut(s)	168, 1134, 1822, 2817, 2999, 3327
MaeIII	GTNAC	8 cut(s)	746, 910, 989, 1446, 2511, 2995, 3220, 3381
MfeI	CAATTG	4 cut(s)	261, 459, 606, 1062
MflI	RGATCY	6 cut(s)	790, 1492, 1600, 1783, 2438, 3047
MhlI	GDGCHC	1 cut(s)	1201
MlsI	TGGCCA	1 cut(s)	1539
MluNI	TGGCCA	1 cut(s)	1539
MlyI	GAGTC	9 cut(s)	308, 653, 859, 1046, 1897, 1949, 2500, 3389, 3404
MmeI	TCCRAC	6 cut(s)	169, 1464, 1843, 1930, 3098, 3241
Mox20I	TGGCCA	1 cut(s)	1539
Mph1103I	ATGCAT	1 cut(s)	2860
MroI	TCCGGA	2 cut(s)	1159, 1591
MroXI	GAANNNNTTC	1 cut(s)	2577
MscI	TGGCCA	1 cut(s)	1539
MseI	TTAA	5 cut(s)	1208, 1662, 1971, 2256, 2315
MslI	CAYNNNNRTG	6 cut(s)	225, 744, 974, 1926, 2655, 3002
Msp20I	TGGCCA	1 cut(s)	1539
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	7 cut(s)	65, 71, 87, 794, 1160, 1592, 2946
MspR9I	CCNGG	8 cut(s)	65, 71, 150, 1775, 1800, 1926, 2561, 2946
MunI	CAATTG	4 cut(s)	261, 459, 606, 1062
MvaI	CCWGG	5 cut(s)	150, 1775, 1800, 1926, 2561
MvnI	CGCG	2 cut(s)	19, 111
MwoI	GCNNNNNNNGC	1 cut(s)	387
NciI	CCSGG	3 cut(s)	65, 71, 2946
NdeI	CATATG	1 cut(s)	2155
NheI	GCTAGC	1 cut(s)	755
NmuCI	GTSAC	5 cut(s)	746, 910, 1446, 2995, 3381
NsbI	TGCGCA	1 cut(s)	776
NsiI	ATGCAT	1 cut(s)	2860
NspI	RCATGY	2 cut(s)	1473, 3260
NspV	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
OliI	CACNNNNGTG	2 cut(s)	225, 3002
PagI	TCATGA	6 cut(s)	322, 520, 667, 853, 1341, 3076
PceI	AGGCCT	2 cut(s)	27, 2559
PciSI	GCTCTTC	2 cut(s)	2788, 3396
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2577
PfeI	GAWTC	6 cut(s)	764, 1436, 1529, 1708, 1997, 2496
PflFI	GACNNNGTC	3 cut(s)	71, 692, 2993
PfoI	TCCNGGA	1 cut(s)	63
PkrI	GCNGC	8 cut(s)	18, 110, 307, 505, 652, 829, 1813, 3415
PleI	GAGTC	9 cut(s)	308, 653, 858, 1045, 1897, 1949, 2500, 3388, 3403
PmaCI	CACGTG	1 cut(s)	3000
PmlI	CACGTG	1 cut(s)	3000
PpsI	GAGTC	9 cut(s)	308, 653, 858, 1045, 1897, 1949, 2500, 3388, 3403
Ppu21I	YACGTR	1 cut(s)	3000
PpuMI	RGGWCCY	1 cut(s)	2942
PshAI	GACNNNNGTC	2 cut(s)	318, 663
PshBI	ATTAAT	1 cut(s)	2315
Psp1406I	AACGTT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	2942
Psp6I	CCWGG	5 cut(s)	148, 1773, 1798, 1924, 2559
PspCI	CACGTG	1 cut(s)	3000
PspFI	CCCAGC	1 cut(s)	1200
PspGI	CCWGG	5 cut(s)	148, 1773, 1798, 1924, 2559
PspPI	GGNCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
PspPPI	RGGWCCY	1 cut(s)	2942
PstI	CTGCAG	1 cut(s)	2599
PstNI	CAGNNNCTG	3 cut(s)	914, 1019, 3398
PsuI	RGATCY	6 cut(s)	790, 1492, 1600, 1783, 2438, 3047
PsyI	GACNNNGTC	3 cut(s)	71, 692, 2993
RsaI	GTAC	8 cut(s)	1090, 1192, 1359, 1509, 1977, 2970, 3138, 3349
RsaNI	GTAC	8 cut(s)	1089, 1191, 1358, 1508, 1976, 2969, 3137, 3348
RseI	CAYNNNNRTG	6 cut(s)	225, 744, 974, 1926, 2655, 3002
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	2788, 3396
SaqAI	TTAA	5 cut(s)	1208, 1662, 1971, 2256, 2315
SatI	GCNGC	8 cut(s)	17, 109, 306, 504, 651, 828, 1812, 3414
Sau96I	GGNCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
SchI	GAGTC	9 cut(s)	308, 653, 859, 1046, 1897, 1949, 2500, 3389, 3404
ScrFI	CCNGG	8 cut(s)	65, 71, 150, 1775, 1800, 1926, 2561, 2946
SduI	GDGCHC	1 cut(s)	1201
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	309, 2595
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	6 cut(s)	128, 344, 1759, 1857, 2628, 2786
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
SmiMI	CAYNNNNRTG	6 cut(s)	225, 744, 974, 1926, 2655, 3002
SmlI	CTYRAG	2 cut(s)	2291, 2481
SmoI	CTYRAG	2 cut(s)	2291, 2481
SseBI	AGGCCT	2 cut(s)	27, 2559
SsiI	CCGC	8 cut(s)	14, 17, 19, 109, 769, 918, 1523, 2116
SspI	AATATT	1 cut(s)	1487
SspMI	CTAG	5 cut(s)	105, 756, 1938, 2186, 3173
StuI	AGGCCT	2 cut(s)	27, 2559
StyD4I	CCNGG	8 cut(s)	63, 69, 148, 1773, 1798, 1924, 2559, 2944
TaiI	ACGT	6 cut(s)	171, 1137, 1825, 2820, 3002, 3330
TaqII	GACCGA	1 cut(s)	2883
TatI	WGTACW	5 cut(s)	1190, 1357, 1507, 2968, 3136
TauI	GCSGC	2 cut(s)	19, 111
TfiI	GAWTC	6 cut(s)	764, 1436, 1529, 1708, 1997, 2496
Tru1I	TTAA	5 cut(s)	1208, 1662, 1971, 2256, 2315
Tru9I	TTAA	5 cut(s)	1208, 1662, 1971, 2256, 2315
TseFI	GTSAC	5 cut(s)	746, 910, 1446, 2995, 3381
TseI	GCWGC	6 cut(s)	305, 503, 650, 827, 1811, 3413
Tsp45I	GTSAC	5 cut(s)	746, 910, 1446, 2995, 3381
TspGWI	ACGGA	4 cut(s)	1343, 2214, 2508, 3108
Tth111I	GACNNNGTC	3 cut(s)	71, 692, 2993
VpaK11BI	GGWCC	6 cut(s)	67, 115, 730, 2942, 3110, 3241
VspI	ATTAAT	1 cut(s)	2315
XagI	CCTNNNNNAGG	3 cut(s)	390, 711, 1778
XapI	RAATTY	7 cut(s)	80, 124, 842, 1273, 1558, 2573, 3300
XbaI	TCTAGA	1 cut(s)	2185
XceI	RCATGY	2 cut(s)	1473, 3260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XmiI	GTMKAC	3 cut(s)	36, 257, 602
XmnI	GAANNNNTTC	1 cut(s)	2577
XspI	CTAG	5 cut(s)	105, 756, 1938, 2186, 3173
Zsp2I	ATGCAT	1 cut(s)	2860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.