Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

62740673 .. 62754822

Gene Structure 14150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3567 bp

ATGAAGAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTTCAGGACCCGGTCGTGAAATTTTCCGGCAAACTCAAAAACCCTAGCAGCGAGGACCATCGGAATTCGAAGGACGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGAAGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCGGTATACAATTGAAGAGAGGCTTTCCATCATAAATGATTTGAAACTCAGTGCTGCCACAGACTCCAGTCGTGAACAATCTGATTTATGTTCGAAAGAAGCCAATGTTCAAGCCAAAGAAATCAGTAGCATACCTTGCGTAGGTGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGTTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAATCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCTTGCTATCATAAATGATTTGAAATTGAGTGCTGCCACAGACTCCAGTCATGAACAACAATCTGATTTAGACAAAGTCAGTAGCATACCTTATGTAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATAGTGCTAGCTTAGATTCCCGCCTGGGCACAATGGAAGAGGATCTGGCTACGAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCATGAACAACAGTCTGAATTAGATGACAATGGACGCAGAAAGTTTCTTTCTGAAACAGAGACCGGCGGTTCAGATGCTCCCTCACCTCCCCCCCAGACAAGCCAGTTAGACTGTGGCATTACAGTGTCCCCTTCCAGTAACGACCCAGTTGATGTCATTTCTGATGCTGATGAAAGCACAAGTTCTTTGGGTACTTATGAATTGGGTCATTGCTCGGGCAATTTTGAAATGGATAACGTAAATATGACGGTTGTTCTTTATCCGGATTATGTTGTATATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCCGTGGTTTAGCACCGTCTGAAAACGACAAAACTTTGAATTTTGAATGGGGAGTTGGTGATCTTGTCAATGTTGAGTGTCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAAGGATGCAGATGGAGATGATAATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAACCCAACTGGTCACAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATCTATTGGAACCGGTGCAAATCATGGAAGCGGACGATTCACTTGGCCAGAGGCATCATTTTCCAAATTTTGACGCGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCCGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCCGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCTAGTGTTCCTGGTGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACTAGGAAAGTGGATTTGTTCGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGGTAAGATATCTATGAATGGACCTAGGCACATAGATTCTACATTAGTCTTCCTATCATTTATGTGCTTTTGTCATGTTTCAGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCATACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTCCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTGTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCGACATAAACAAGTTCTCCACCTTTCTTAATGGAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATCGTTACCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAGGCTAAATATCCGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCTATAGCTTGCCAAGAAAATATATCAACTTCTCAAGCAGACCACGGAATCGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCCGAGTGTGTTAATGATGCGGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACGGGAGACACTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTTGTGGTATTCAATGCTCTTCGAAATCTTATGGAGTTGAGACTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAATGGATGTACAAAATTATCCATCATTGGACAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCGGATCCTTGATTGAAGAAGGTTCTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATATACAGACCCATTCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAGCACTTTTGTTACTGAAGAAATTTCTCTGGACCAAAAAAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATATACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGTGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGAAGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1188

Amino Acids

131.68

Weight (kDa)

4.54

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	387 - 505	3.1e-43	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	560 - 783	9.8e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2220, 2687
Acc65I	GGTACC	1 cut(s)	2074
AccB1I	GGYRCC	2 cut(s)	2074, 2935
AccBSI	CCGCTC	1 cut(s)	3144
AccI	GTMKAC	4 cut(s)	36, 266, 464, 665
AccII	CGCG	2 cut(s)	19, 1586
AccIII	TCCGGA	2 cut(s)	1177, 1609
AclI	AACGTT	2 cut(s)	168, 567
AcoI	YGGCCR	1 cut(s)	1555
AcsI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
AcuI	CTGAAG	3 cut(s)	3015, 3345, 3519
AcvI	CACGTG	1 cut(s)	3099
AfaI	GTAC	6 cut(s)	1108, 1210, 1377, 2076, 3069, 3448
AfiI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
AflIII	ACRYGT	2 cut(s)	1840, 3098
AgeI	ACCGGT	1 cut(s)	1522
AjnI	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1290, 1322
AleI	CACNNNNGTG	1 cut(s)	3101
Alw21I	GWGCWC	1 cut(s)	3314
Alw26I	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
AlwNI	CAGNNNCTG	1 cut(s)	3497
Ama87I	CYCGRG	2 cut(s)	1129, 1733
Aor13HI	TCCGGA	2 cut(s)	1177, 1609
AoxI	GGCC	7 cut(s)	25, 1555, 2263, 2656, 3046, 3112, 3280
ApeKI	GCWGC	7 cut(s)	108, 314, 512, 713, 890, 1829, 3512
ApoI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
ArsI	GACNNNNNNTTYG	2 cut(s)	1574, 1606
AseI	ATTAAT	1 cut(s)	2414
AsiGI	ACCGGT	1 cut(s)	1522
Asp700I	GAANNNNTTC	1 cut(s)	2676
Asp718I	GGTACC	1 cut(s)	2074
AspA2I	CCTAGG	1 cut(s)	1988
AspLEI	GCGC	2 cut(s)	11, 2397
AspS9I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
AsuC2I	CCSGG	3 cut(s)	71, 2444, 2493
AsuHPI	GGTGA	5 cut(s)	990, 1322, 1958, 3143, 3488
AsuII	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
AsuNHI	GCTAGC	1 cut(s)	818
AvaI	CYCGRG	2 cut(s)	1129, 1733
AvaII	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
AvrII	CCTAGG	1 cut(s)	1988
BaeGI	GKGCMC	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	1557
BamHI	GGATCC	3 cut(s)	1618, 1801, 3146
BanI	GGYRCC	2 cut(s)	2074, 2935
BanII	GRGCYC	1 cut(s)	1219
BbrPI	CACGTG	1 cut(s)	3099
BbsI	GAAGAC	2 cut(s)	2005, 3429
Bbv12I	GWGCWC	1 cut(s)	3314
BbvI	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BceAI	ACGGC	1 cut(s)	1613
BciT130I	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	3 cut(s)	71, 2444, 2493
BcoDI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BfaI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
BfmI	CTRYAG	2 cut(s)	2550, 2694
BfuAI	ACCTGC	2 cut(s)	2220, 2687
BisI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
BlnI	CCTAGG	1 cut(s)	1988
BlsI	GCNGC	8 cut(s)	18, 110, 316, 514, 715, 892, 1831, 3514
Bme18I	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
BmeT110I	CYCGRG	2 cut(s)	1129, 1733
BmgT120I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
BmiI	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
BmrI	ACTGGG	1 cut(s)	1055
BmtI	GCTAGC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	1055
BoxI	GACNNNNGTC	2 cut(s)	327, 726
BpiI	GAAGAC	2 cut(s)	2005, 3429
BpmI	CTGGAG	5 cut(s)	310, 709, 2249, 2814, 3522
Bpu14I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BpuEI	CTTGAG	2 cut(s)	2375, 2565
BpuMI	CCSGG	3 cut(s)	71, 2444, 2493
BsaAI	YACGTR	1 cut(s)	3099
BsaBI	GATNNNNATC	2 cut(s)	1653, 2475
BsaI	GGTCTC	2 cut(s)	968, 2126
BsaJI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BsaWI	WCCGGW	3 cut(s)	1177, 1522, 1609
BsaXI	ACNNNNNCTCC	4 cut(s)	2327, 2357, 3479, 3509
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
Bse118I	RCCGGY	2 cut(s)	977, 1522
Bse3DI	GCAATG	4 cut(s)	795, 802, 1123, 3448
Bse8I	GATNNNNATC	2 cut(s)	1653, 2475
BseAI	TCCGGA	2 cut(s)	1177, 1609
BseBI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BseDI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BseJI	GATNNNNATC	2 cut(s)	1653, 2475
BseLI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
BseMI	GCAATG	4 cut(s)	795, 802, 1123, 3448
BseMII	CTCAG	5 cut(s)	322, 1341, 2070, 2680, 3182
BseRI	GAGGAG	4 cut(s)	249, 447, 648, 1445
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BseYI	CCCAGC	1 cut(s)	1218
BsgI	GTGCAG	2 cut(s)	3042, 3158
Bsh1236I	CGCG	2 cut(s)	19, 1586
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BshNI	GGYRCC	2 cut(s)	2074, 2935
BshTI	ACCGGT	1 cut(s)	1522
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	3314
BsiHKCI	CYCGRG	2 cut(s)	1129, 1733
BsiSI	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
BslFI	GGGAC	1 cut(s)	1027
BslI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
BsmAI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BsmFI	GGGAC	1 cut(s)	1027
BsnI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
Bso31I	GGTCTC	2 cut(s)	968, 2126
BsoBI	CYCGRG	2 cut(s)	1129, 1733
Bsp119I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
Bsp1286I	GDGCHC	3 cut(s)	842, 1219, 3314
Bsp13I	TCCGGA	2 cut(s)	1177, 1609
Bsp1407I	TGTACA	2 cut(s)	1208, 3067
BspANI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BspCNI	CTCAG	5 cut(s)	321, 1342, 2069, 2679, 3181
BspEI	TCCGGA	2 cut(s)	1177, 1609
BspFNI	CGCG	2 cut(s)	19, 1586
BspHI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
BspLI	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
BspMAI	CTGCAG	1 cut(s)	2698
BspMI	ACCTGC	2 cut(s)	2220, 2687
BspOI	GCTAGC	1 cut(s)	822
BspQI	GCTCTTC	2 cut(s)	2887, 3495
BspT104I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BspT107I	GGYRCC	2 cut(s)	2074, 2935
BspTNI	GGTCTC	2 cut(s)	968, 2126
BsrBI	CCGCTC	1 cut(s)	3144
BsrDI	GCAATG	4 cut(s)	795, 802, 1123, 3448
BsrFI	RCCGGY	2 cut(s)	977, 1522
BsrGI	TGTACA	2 cut(s)	1208, 3067
BssAI	RCCGGY	2 cut(s)	977, 1522
BssECI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BssNAI	GTATAC	3 cut(s)	267, 465, 666
BssT1I	CCWWGG	1 cut(s)	1988
Bst1107I	GTATAC	3 cut(s)	267, 465, 666
Bst2UI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
Bst6I	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstAUI	TGTACA	2 cut(s)	1208, 3067
BstBAI	YACGTR	1 cut(s)	3099
BstBI	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BstC8I	GCNNGC	7 cut(s)	684, 820, 1785, 2460, 2464, 2557, 2656
BstDEI	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
BstDSI	CCRYGG	3 cut(s)	17, 1255, 2590
BstENI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
BstFNI	CGCG	2 cut(s)	19, 1586
BstHHI	GCGC	2 cut(s)	11, 2397
BstMAI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BstNSI	RCATGY	2 cut(s)	1491, 3359
BstPAI	GACNNNNGTC	2 cut(s)	327, 726
BstSFI	CTRYAG	2 cut(s)	2550, 2694
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	2 cut(s)	19, 1586
BstV1I	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BstV2I	GAAGAC	2 cut(s)	2005, 3429
BstX2I	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
BstXI	CCANNNNNNTGG	1 cut(s)	2756
BstYI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
BstZ17I	GTATAC	3 cut(s)	267, 465, 666
BsuRI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BtgI	CCRYGG	3 cut(s)	17, 1255, 2590
BtsI	GCAGTG	2 cut(s)	814, 2473
BveI	ACCTGC	2 cut(s)	2220, 2687
Cac8I	GCNNGC	7 cut(s)	684, 820, 1785, 2460, 2464, 2557, 2656
CaiI	CAGNNNCTG	1 cut(s)	3497
CciI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
CfoI	GCGC	2 cut(s)	11, 2397
Cfr10I	RCCGGY	2 cut(s)	977, 1522
Cfr13I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	2 cut(s)	957, 1592
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
CspAI	ACCGGT	1 cut(s)	1522
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviQI	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
DdeI	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
EaeI	YGGCCR	1 cut(s)	1555
Eam1104I	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
EarI	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
Eco130I	CCWWGG	1 cut(s)	1988
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	1219
Eco31I	GGTCTC	2 cut(s)	968, 2126
Eco32I	GATATC	1 cut(s)	1974
Eco47I	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
Eco57I	CTGAAG	3 cut(s)	3015, 3345, 3519
Eco72I	CACGTG	1 cut(s)	3099
Eco88I	CYCGRG	2 cut(s)	1129, 1733
EcoNI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
EcoRV	GATATC	1 cut(s)	1974
EcoT14I	CCWWGG	1 cut(s)	1988
EcoT22I	ATGCAT	1 cut(s)	2959
EcoT38I	GRGCYC	1 cut(s)	1219
ErhI	CCWWGG	1 cut(s)	1988
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 666, 698
FaqI	GGGAC	1 cut(s)	1027
FauI	CCCGC	2 cut(s)	839, 2647
FauNDI	CATATG	1 cut(s)	2254
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	4 cut(s)	36, 266, 464, 665
Fnu4HI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
FriOI	GRGCYC	1 cut(s)	1219
Fsp4HI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
FspBI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
GlaI	GCGC	2 cut(s)	10, 2396
GluI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
GsaI	CCCAGC	1 cut(s)	1222
GsuI	CTGGAG	5 cut(s)	310, 709, 2249, 2814, 3522
HaeIII	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
HapII	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
HgaI	GACGC	2 cut(s)	957, 1592
HhaI	GCGC	2 cut(s)	11, 2397
Hin6I	GCGC	2 cut(s)	9, 2395
HinP1I	GCGC	2 cut(s)	9, 2395
HincII	GTYRAC	5 cut(s)	220, 418, 619, 1227, 3430
HindII	GTYRAC	5 cut(s)	220, 418, 619, 1227, 3430
HpaI	GTTAAC	1 cut(s)	1227
HpaII	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
HphI	GGTGA	5 cut(s)	990, 1322, 1958, 3143, 3488
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	9 cut(s)	124, 1056, 1240, 2385, 2734, 2990, 3155, 3173, 3539
HpyCH4IV	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
HpySE526I	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
HspAI	GCGC	2 cut(s)	9, 2395
Kpn2I	TCCGGA	2 cut(s)	1177, 1609
KpnI	GGTACC	1 cut(s)	2078
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	1227
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	2887, 3495
LmnI	GCTCC	6 cut(s)	997, 1214, 2230, 2311, 2759, 3487
Lsp1109I	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
MaeII	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
MaeIII	GTNAC	7 cut(s)	1052, 1464, 2438, 2610, 3094, 3319, 3480
MbiI	CCGCTC	1 cut(s)	3144
MfeI	CAATTG	3 cut(s)	270, 468, 669
MflI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
MhlI	GDGCHC	3 cut(s)	842, 1219, 3314
MlsI	TGGCCA	1 cut(s)	1557
MluNI	TGGCCA	1 cut(s)	1557
MlyI	GAGTC	9 cut(s)	317, 515, 716, 922, 1915, 2048, 2599, 3488, 3503
MmeI	TCCRAC	5 cut(s)	169, 1861, 2029, 3197, 3340
Mox20I	TGGCCA	1 cut(s)	1557
Mph1103I	ATGCAT	1 cut(s)	2959
MroI	TCCGGA	2 cut(s)	1177, 1609
MroXI	GAANNNNTTC	1 cut(s)	2676
MscI	TGGCCA	1 cut(s)	1557
MseI	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
MslI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
Msp20I	TGGCCA	1 cut(s)	1557
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
MunI	CAATTG	3 cut(s)	270, 468, 669
MvaI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
MvnI	CGCG	2 cut(s)	19, 1586
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	3 cut(s)	71, 2444, 2493
NdeI	CATATG	1 cut(s)	2254
NheI	GCTAGC	1 cut(s)	818
NlaIV	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
NmuCI	GTSAC	3 cut(s)	1464, 3094, 3480
NsiI	ATGCAT	1 cut(s)	2959
NspI	RCATGY	2 cut(s)	1491, 3359
NspV	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
OliI	CACNNNNGTG	1 cut(s)	3101
PagI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
PceI	AGGCCT	1 cut(s)	27
PciSI	GCTCTTC	2 cut(s)	2887, 3495
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2676
PfeI	GAWTC	6 cut(s)	827, 1547, 1726, 2000, 2096, 2595
PflFI	GACNNNGTC	3 cut(s)	71, 755, 3092
PfoI	TCCNGGA	1 cut(s)	2491
PinAI	ACCGGT	1 cut(s)	1522
PkrI	GCNGC	8 cut(s)	18, 110, 316, 514, 715, 892, 1831, 3514
PleI	GAGTC	9 cut(s)	317, 515, 716, 921, 1915, 2048, 2599, 3487, 3502
PmaCI	CACGTG	1 cut(s)	3099
PmlI	CACGTG	1 cut(s)	3099
PpsI	GAGTC	9 cut(s)	317, 515, 716, 921, 1915, 2048, 2599, 3487, 3502
Ppu21I	YACGTR	1 cut(s)	3099
PpuMI	RGGWCCY	1 cut(s)	67
PshAI	GACNNNNGTC	2 cut(s)	327, 726
PshBI	ATTAAT	1 cut(s)	2414
Psp1406I	AACGTT	2 cut(s)	168, 567
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
PspCI	CACGTG	1 cut(s)	3099
PspFI	CCCAGC	1 cut(s)	1218
PspGI	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
PspN4I	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
PspPI	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	2698
PstNI	CAGNNNCTG	1 cut(s)	3497
PsuI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
PsyI	GACNNNGTC	3 cut(s)	71, 755, 3092
RsaI	GTAC	6 cut(s)	1108, 1210, 1377, 2076, 3069, 3448
RsaNI	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
RseI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	2887, 3495
SaqAI	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
SatI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
Sau96I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
SchI	GAGTC	9 cut(s)	317, 515, 716, 922, 1915, 2048, 2599, 3488, 3503
SduI	GDGCHC	3 cut(s)	842, 1219, 3314
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	2550, 2694
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
SmiMI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
SmlI	CTYRAG	2 cut(s)	2390, 2580
SmoI	CTYRAG	2 cut(s)	2390, 2580
SseBI	AGGCCT	1 cut(s)	27
SspI	AATATT	1 cut(s)	1505
SspMI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	1988
TaiI	ACGT	6 cut(s)	171, 570, 1155, 1843, 3101, 3429
TaqII	GACCGA	1 cut(s)	2982
TatI	WGTACW	3 cut(s)	1208, 1375, 3067
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	6 cut(s)	827, 1547, 1726, 2000, 2096, 2595
Tru1I	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
Tru9I	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
TseFI	GTSAC	3 cut(s)	1464, 3094, 3480
TseI	GCWGC	7 cut(s)	108, 314, 512, 713, 890, 1829, 3512
Tsp45I	GTSAC	3 cut(s)	1464, 3094, 3480
TspGWI	ACGGA	4 cut(s)	1244, 1361, 2607, 3207
Tth111I	GACNNNGTC	3 cut(s)	71, 755, 3092
VpaK11BI	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
VspI	ATTAAT	1 cut(s)	2414
XagI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
XapI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
XbaI	TCTAGA	1 cut(s)	2284
XceI	RCATGY	2 cut(s)	1491, 3359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmaJI	CCTAGG	1 cut(s)	1988
XmiI	GTMKAC	4 cut(s)	36, 266, 464, 665
XmnI	GAANNNNTTC	1 cut(s)	2676
XspI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
Zsp2I	ATGCAT	1 cut(s)	2959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.