Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

47560611 .. 47573707

Gene Structure 13097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1385000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3396 bp

ATGAAGACTAGCGGCCTCGAAGTCTTCGACTTCAGCGAGGAGGACGAGCACTCGGAATCGGTCCAGGGGAAGTATTTGGGGAGGTTCAAAAACCCTAGCCTCGATACCAATCGGATTTTCAAGTGCGATTTTCTCCAGAATGTTGCCCAGGGAGCCAAACTTCAAACAAAAGATATCAGCAGCATCCCTTGCGTAAATGTTGATTCAGTTGACCGTGATCATTGTTGTGATAATGCTATTTCACATTCCCCCATAGGAACAATTGAAGAGAGCCTGGCTACCAAGAAAGAGTATATGGAATTGGATGCTGCACCACAATTCAAATGTTTGAGTCATGAACAACAATCTGATTCCAAATTAGATAGTCATGGATCCAGAAGTTTTGTTTCTGAGCCAGAGAGAAGAGGTTCAAATGCTACGTCATCATCGTCTTGGGAAAGCCAGTTACACTTTGCCCTTGCAGTGTCTCTGTCCAGTAATGAGCCAACTGATATGATTTTAGATGCTGATGAAAGCACAAGTGACTCTCCATCAAGTCCTGCTTCTGAAATTGAAGAGGATGACGATTCTTTGGGTTCTTATAAATCATATCATTGCTCTGGTGATTTGGAAATGGATAATACAAATATGACGGTTGTTCTTTATCCTGATTATGTTATATATCGGGATAGTTATTGTACAGAACCTCGGTTGACCTTTTCTCCCAGTTGCTTCAAAGTCAGTGGTTCAACATCTGAATGCCCTGGAACCTTTAGTTCTGAATGGGAAGTTGACGATCTCATTGATGTAGAGTGTCAGTGGTTTCAAAAAGTTGAATTTGTCATGATAAAACTTCGTGTTGTAGCAAAGGATGCCACTGAAGATGATAGTGCACCCAATACTTCTGGCATTGAAGAGTTGAAGATTGCAATTGTTGAACCCAACTGGATCAAGCAACAGGAAAGGATAATGTCTTTGAATGCGAAATATATCAATTCATGGGTTTTGCATGACATGCACACGGAAACAGATGAGGAGGATTCACTTGGACAGAGGCATCATTTTCCGAATTTTGATGAGCCTTTTGAAGATGTTGTATATCCAAAAGGGGACTCAGATGCTGTTTCCATCAGCAAGAGAGATGTTGATCTCTTACAGCCAGAGACATTTATTAATGATACAATTATTGACTTCTATATCAAGTATCTGAAGAATCAGATTCAACCTGAGAAACGGCTTAGGTACCACTTTTTCAATAGTTTTTTCTTTCGGAAGCTGGCTGACCTGGACAAAGATCCATCCAGTGTTTCTGATGGCAGAGCTGCTTTTGAACGAGTTCGTAAATGGACGAGGAAAGTGGATTTATTTGAAAAGGATTACATCTTCATTCCTATAAACTTCAATCTACACTGGAGCCTAATAGTCATATGCCATCTTGGTGAAGTGCCTAAACATAATGGTGGAGACTCAGGAAATTTACTTAAAGTACCTTGTATTTTACACATGGATTCTATCAAAGGAAGTCATACGGGTCTGAAAAATCTAATTCAAAGTTATCTGTGGGAAGAGTGGAAAGAAAGGAAAAAGGAGACATCTGAAGAAATCTCATCAAAGTTTCACAACCTGCGGTTTGTCCCACTTGAGCTACCGCAACAGGAAAATTCATTCGATTGTGGCCTGTTTTTACTCCACTATTTGGAGCTCTTTTTGGCAGATGCTCCTGTTCATTTCAGCCCTTTCAAAATAACCAAGTTTTCCAACTTTCTTAATGCAAATTGGTTTCTTCCGTCCGAGGCATCTCTGAAGCGTACTCTTATTCAAAGGTTAATTTTTGAGCTCCTTGAAGATCGTTGTCGGGGAGTCTCTTCAGCGGCTTCCAGTGATGAAGACCAGGCTAAGTTTCCAGAATGTAACAAGCATGAAACTGGTGTGCAATCTTTTTCAGGAAGATGTGGTCCTGCTATAGCTTGTCAAGAAAATATGTCAAGTTCTCAAGCAGGCCAGGGGATTGAAATTACTCTGTTATCCTCAACTTCTCTAAGGAGTTCTGAGTGCGTTAAAGATGCAGGCTTTGTTATCCAGGAACTTTTTGAGCCAGGAGCCACCCCAAATTCACTATTTGGAGAATATCAATCATTTGACCAAAAGTCATCTTTTTGCCGTCTTAATGGAGCTGTACCACTGTTGGAGGAAGACACCAAAACTGGAGAGCAGTTTGCTTTTTTGCCTACAGGAGAGACTGGTTTTCAGCAAATAACTGGAATTACATCTCAAACTTGTGACATTCCGTATACATCAAGAGCTTATGGCGTTGAGACTTCCTTTGACTTGGCACAAACGGAAAATGAAAACACCGATTCATCCCCTAAACTATCTATGTGTGTCTCTGACCACGCTGAAGATATAGAGGTCATTGAGGATTATCCAGTTGGGGAAGGTTTGGGTCTGAGCCAGAAAGAAAAAATGGATGTAAACCATTCTCAATCAGTGGAAAACGTCACACGTTTAACAGATTTCCTTGTTTCTGCTCCGGGCAAGATGCAGGGCGCTTCCATTATAGAATTGGAAGGTTCTCAAGATCATGATAAGGTGTATGACGGGAATGAAAGTGGAGATTCTCAAGGCCCTGATGGCAACGAAAGCTGTCAAGAACATGATAAGGGGCATGATGGCAACAAAAATGGAGGTTCTGAAGACCATGGTAAGATTGATGGAAAAAGTGGAGGTTCTCAAGACCATGATGTAGTGCAGGATGCCGATGAAAATATGGGTTTTCAAGACCATGATAAGGTGCATGATGGCAATGTAAATGAAGCTTCTCAAGACCATGATAAGGTGCAGGATGGCAGCAAAAGTAGAGGCTCTCATGACCATGATAAGGAGCAGGATGGCAAAGAAAATGGAGGTTCTCGAGACCATGATAAGGAGCATGATGGCTACGAAAATGGAGGTTCTCAAGACCATGATCTGGTGCAGGATGTCAATGAAAATGGAGGCTCTCAAGGCCATGATAAGGTGCAGGATGGTGACGAAAATGGAGGCTCTCAAGACCATGATAAGGTGCAGGATGGTGACGAAAATGGAGGCTCTCAAGACCATGAAAAGGTGCAGGATGTTGACGAAACTGGAGGCTCTCAAAACCATGATAAGGTGCAGGATGGCAACAAAAATGGTGCTTCTCAAGACCATGATATGGTGCAGGAAGCAGCTCCAATTCCCTCGTGCCAAGAAAATCCTGACATACAAATGGATCAAGACTCCGATATGGTAGACAACAGGACTGTCTCATGTGATGATGTTCAAATGGCTGATAGTCCGCCGCCTGATGATGTTCTGATGCCCGAATCGCTAGAGCAACGTGCTGCAAAAAGGCTGCGGCTTACACCTCCAGTTGAAGGGGATAAATGTGTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1132

Amino Acids

126.06

Weight (kDa)

4.54

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	210 - 327	1.1e-45	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	383 - 578	2.7e-36	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	1611
Acc65I	GGTACC	1 cut(s)	1221
AccB1I	GGYRCC	1 cut(s)	1221
AccB7I	CCANNNNNTGG	3 cut(s)	1675, 2947, 3172
AccI	GTMKAC	2 cut(s)	2270, 3249
AciI	CCGC	7 cut(s)	12, 1606, 1628, 1850, 3296, 3299, 3355
AclWI	GGATC	5 cut(s)	366, 379, 935, 1268, 3237
AcsI	RAATTY	5 cut(s)	815, 1048, 1453, 1639, 2089
AcuI	CTGAAG	8 cut(s)	16, 879, 1208, 1596, 1802, 1830, 2397, 2691
AfaI	GTAC	5 cut(s)	679, 1223, 1467, 1789, 2157
AflIII	ACRYGT	1 cut(s)	2480
AhdI	GACNNNNNGTC	1 cut(s)	2125
AjnI	CCWGG	9 cut(s)	63, 147, 273, 742, 1263, 1869, 1980, 2058, 2074
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
Alw21I	GWGCWC	4 cut(s)	51, 874, 1683, 1818
Alw44I	GTGCAC	1 cut(s)	870
AlwI	GGATC	5 cut(s)	366, 379, 935, 1268, 3237
AlwNI	CAGNNNCTG	1 cut(s)	1100
Ama87I	CYCGRG	1 cut(s)	2889
AoxI	GGCC	5 cut(s)	13, 1654, 1978, 2602, 2983
ApaLI	GTGCAC	1 cut(s)	870
ApeKI	GCWGC	7 cut(s)	180, 308, 1301, 2826, 3185, 3341, 3352
ApoI	RAATTY	5 cut(s)	815, 1048, 1453, 1639, 2089
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AseI	ATTAAT	1 cut(s)	1152
Asp700I	GAANNNNTTC	2 cut(s)	406, 1314
Asp718I	GGTACC	1 cut(s)	1221
AspLEI	GCGC	1 cut(s)	2528
AspS9I	GGNCC	3 cut(s)	61, 1934, 2603
AsuC2I	CCSGG	1 cut(s)	2511
AsuHPI	GGTGA	4 cut(s)	614, 1430, 3017, 3062
AvaI	CYCGRG	1 cut(s)	2889
AvaII	GGWCC	2 cut(s)	61, 1934
BaeGI	GKGCMC	1 cut(s)	874
BamHI	GGATCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	1221
BanII	GRGCYC	2 cut(s)	1683, 1818
BauI	CACGAG	1 cut(s)	3199
BbsI	GAAGAC	5 cut(s)	11, 16, 1872, 2178, 2679
Bbv12I	GWGCWC	4 cut(s)	51, 874, 1683, 1818
BbvI	GCAGC	7 cut(s)	192, 295, 1288, 2838, 3197, 3328, 3339
BceAI	ACGGC	2 cut(s)	1229, 2124
BciT130I	CCWGG	9 cut(s)	65, 149, 275, 744, 1265, 1871, 1982, 2060, 2076
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	2511
BfaI	CTAG	3 cut(s)	9, 96, 3329
BfmI	CTRYAG	2 cut(s)	1941, 2208
BfoI	RGCGCY	1 cut(s)	2529
BfuAI	ACCTGC	1 cut(s)	1611
BglI	GCCNNNNNGGC	1 cut(s)	2610
Bme18I	GGWCC	2 cut(s)	61, 1934
BmeRI	GACNNNNNGTC	1 cut(s)	2125
BmeT110I	CYCGRG	1 cut(s)	2889
BmgT120I	GGNCC	3 cut(s)	61, 1934, 2603
BmiI	GGNNCC	6 cut(s)	154, 373, 748, 1223, 1394, 2080
BmrI	ACTGGG	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	5 cut(s)	11, 16, 1872, 2178, 2679
BpmI	CTGGAG	5 cut(s)	119, 1411, 2205, 3126, 3351
Bpu10I	CCTNAGC	1 cut(s)	1217
BpuMI	CCSGG	1 cut(s)	2511
BsaBI	GATNNNNATC	2 cut(s)	108, 1125
BsaI	GGTCTC	1 cut(s)	2886
BsaJI	CCNNGG	8 cut(s)	64, 147, 148, 686, 742, 1770, 1981, 2677
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bse3DI	GCAATG	2 cut(s)	592, 2788
Bse8I	GATNNNNATC	2 cut(s)	108, 1125
BseBI	CCWGG	9 cut(s)	65, 149, 275, 744, 1265, 1871, 1982, 2060, 2076
BseDI	CCNNGG	8 cut(s)	64, 147, 148, 686, 742, 1770, 1981, 2677
BseJI	GATNNNNATC	2 cut(s)	108, 1125
BseMI	GCAATG	2 cut(s)	592, 2788
BseMII	CTCAG	6 cut(s)	381, 1107, 1197, 1461, 2019, 2417
BseRI	GAGGAG	2 cut(s)	53, 1028
BseSI	GKGCMC	1 cut(s)	874
BseXI	GCAGC	7 cut(s)	192, 295, 1288, 2838, 3197, 3328, 3339
BsgI	GTGCAG	9 cut(s)	294, 2747, 2837, 2972, 3017, 3062, 3107, 3152, 3197
BshFI	GGCC	5 cut(s)	15, 1656, 1980, 2604, 2985
BshNI	GGYRCC	1 cut(s)	1221
BsiHKAI	GWGCWC	4 cut(s)	51, 874, 1683, 1818
BsiHKCI	CYCGRG	1 cut(s)	2889
BsiSI	CCGG	1 cut(s)	2510
BslFI	GGGAC	2 cut(s)	1103, 1598
BsmFI	GGGAC	2 cut(s)	1103, 1598
BsmI	GAATGC	2 cut(s)	743, 964
BsnI	GGCC	5 cut(s)	15, 1656, 1980, 2604, 2985
Bso31I	GGTCTC	1 cut(s)	2886
BsoBI	CYCGRG	1 cut(s)	2889
Bsp1286I	GDGCHC	4 cut(s)	51, 874, 1683, 1818
Bsp1407I	TGTACA	1 cut(s)	677
Bsp19I	CCATGG	1 cut(s)	2677
BspACI	CCGC	7 cut(s)	12, 1606, 1628, 1850, 3296, 3299, 3355
BspANI	GGCC	5 cut(s)	15, 1656, 1980, 2604, 2985
BspCNI	CTCAG	6 cut(s)	382, 1106, 1198, 1460, 2020, 2418
BspHI	TCATGA	4 cut(s)	334, 822, 2560, 2845
BspLI	GGNNCC	6 cut(s)	154, 373, 748, 1223, 1394, 2080
BspMI	ACCTGC	1 cut(s)	1611
BspPI	GGATC	5 cut(s)	366, 379, 935, 1268, 3237
BspT107I	GGYRCC	1 cut(s)	1221
BspTNI	GGTCTC	1 cut(s)	2886
BsrDI	GCAATG	2 cut(s)	592, 2788
BsrGI	TGTACA	1 cut(s)	677
BssECI	CCNNGG	8 cut(s)	64, 147, 148, 686, 742, 1770, 1981, 2677
BssNAI	GTATAC	1 cut(s)	2271
BssSI	CACGAG	1 cut(s)	3199
BssT1I	CCWWGG	1 cut(s)	2677
Bst1107I	GTATAC	1 cut(s)	2271
Bst2BI	CACGAG	1 cut(s)	3199
Bst2UI	CCWGG	9 cut(s)	65, 149, 275, 744, 1265, 1871, 1982, 2060, 2076
Bst4CI	ACNGT	4 cut(s)	215, 634, 2163, 3262
Bst6I	CTCTTC	6 cut(s)	261, 397, 549, 888, 1539, 1849
BstAPI	GCANNNNNTGC	3 cut(s)	189, 851, 994
BstAUI	TGTACA	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	1257, 1978, 2047
BstDEI	CTNAG	9 cut(s)	390, 1093, 1206, 1217, 1447, 1875, 2018, 2028, 2426
BstDSI	CCRYGG	1 cut(s)	2677
BstH2I	RGCGCY	1 cut(s)	2529
BstHHI	GCGC	1 cut(s)	2528
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 189, 851, 994, 2610, 2619, 2982, 3325
BstNI	CCWGG	9 cut(s)	65, 149, 275, 744, 1265, 1871, 1982, 2060, 2076
BstNSI	RCATGY	1 cut(s)	997
BstSFI	CTRYAG	2 cut(s)	1941, 2208
BstSLI	GKGCMC	1 cut(s)	874
BstV1I	GCAGC	7 cut(s)	192, 295, 1288, 2838, 3197, 3328, 3339
BstV2I	GAAGAC	5 cut(s)	11, 16, 1872, 2178, 2679
BstX2I	RGATCY	2 cut(s)	371, 1273
BstYI	RGATCY	2 cut(s)	371, 1273
BstZ17I	GTATAC	1 cut(s)	2271
BsuRI	GGCC	5 cut(s)	15, 1656, 1980, 2604, 2985
BtgI	CCRYGG	1 cut(s)	2677
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	9 cut(s)	468, 727, 803, 855, 1288, 1387, 1864, 2159, 2472
BveI	ACCTGC	1 cut(s)	1611
Cac8I	GCNNGC	3 cut(s)	1257, 1978, 2047
CaiI	CAGNNNCTG	1 cut(s)	1100
CciI	TCATGA	4 cut(s)	334, 822, 2560, 2845
CfoI	GCGC	1 cut(s)	2528
Cfr13I	GGNCC	3 cut(s)	61, 1934, 2603
Csp6I	GTAC	5 cut(s)	678, 1222, 1466, 1788, 2156
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviQI	GTAC	5 cut(s)	678, 1222, 1466, 1788, 2156
DdeI	CTNAG	9 cut(s)	390, 1093, 1206, 1217, 1447, 1875, 2018, 2028, 2426
DriI	GACNNNNNGTC	1 cut(s)	2125
Eam1104I	CTCTTC	6 cut(s)	261, 397, 549, 888, 1539, 1849
Eam1105I	GACNNNNNGTC	1 cut(s)	2125
EarI	CTCTTC	6 cut(s)	261, 397, 549, 888, 1539, 1849
EciI	GGCGGA	1 cut(s)	3285
Ecl136II	GAGCTC	2 cut(s)	1681, 1816
Eco130I	CCWWGG	1 cut(s)	2677
Eco24I	GRGCYC	2 cut(s)	1683, 1818
Eco31I	GGTCTC	1 cut(s)	2886
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	61, 1934
Eco53kI	GAGCTC	2 cut(s)	1681, 1816
Eco57I	CTGAAG	8 cut(s)	16, 879, 1208, 1596, 1802, 1830, 2397, 2691
Eco88I	CYCGRG	1 cut(s)	2889
EcoICRI	GAGCTC	2 cut(s)	1681, 1816
EcoO109I	RGGNCCY	1 cut(s)	2603
EcoRII	CCWGG	9 cut(s)	63, 147, 273, 742, 1263, 1869, 1980, 2058, 2074
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	2677
EcoT38I	GRGCYC	2 cut(s)	1683, 1818
ErhI	CCWWGG	1 cut(s)	2677
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	2 cut(s)	1103, 1598
FauNDI	CATATG	1 cut(s)	1406
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	2 cut(s)	2270, 3249
FriOI	GRGCYC	2 cut(s)	1683, 1818
FspBI	CTAG	3 cut(s)	9, 96, 3329
GlaI	GCGC	1 cut(s)	2527
GsuI	CTGGAG	5 cut(s)	119, 1411, 2205, 3126, 3351
HaeII	RGCGCY	1 cut(s)	2529
HaeIII	GGCC	5 cut(s)	15, 1656, 1980, 2604, 2985
HapII	CCGG	1 cut(s)	2510
HhaI	GCGC	1 cut(s)	2528
Hin6I	GCGC	1 cut(s)	2526
HinP1I	GCGC	1 cut(s)	2526
HincII	GTYRAC	4 cut(s)	211, 693, 772, 3097
HindII	GTYRAC	4 cut(s)	211, 693, 772, 3097
HindIII	AAGCTT	1 cut(s)	2793
HpaII	CCGG	1 cut(s)	2510
HphI	GGTGA	4 cut(s)	614, 1430, 3017, 3062
Hpy166II	GTNNAC	8 cut(s)	211, 693, 772, 872, 2271, 2452, 3097, 3250
Hpy8I	GTNNAC	8 cut(s)	211, 693, 772, 872, 2271, 2452, 3097, 3250
HpyAV	CCTTC	3 cut(s)	2408, 2540, 3368
HpyCH4III	ACNGT	4 cut(s)	215, 634, 2163, 3262
HpyCH4IV	ACGT	4 cut(s)	419, 2475, 2482, 3337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 189, 851, 994, 2610, 2619, 2982, 3325
HpyF3I	CTNAG	9 cut(s)	390, 1093, 1206, 1217, 1447, 1875, 2018, 2028, 2426
HpySE526I	ACGT	4 cut(s)	419, 2475, 2482, 3337
HspAI	GCGC	1 cut(s)	2526
KpnI	GGTACC	1 cut(s)	1225
Ksp22I	TGATCA	1 cut(s)	217
Lsp1109I	GCAGC	7 cut(s)	192, 295, 1288, 2838, 3197, 3328, 3339
MaeI	CTAG	3 cut(s)	9, 96, 3329
MaeII	ACGT	4 cut(s)	419, 2475, 2482, 3337
MaeIII	GTNAC	8 cut(s)	444, 521, 1889, 2258, 2476, 3005, 3050, 3388
MfeI	CAATTG	2 cut(s)	261, 909
MflI	RGATCY	2 cut(s)	371, 1273
MhlI	GDGCHC	4 cut(s)	51, 874, 1683, 1818
MlyI	GAGTC	6 cut(s)	340, 518, 1085, 1439, 1848, 3230
MmeI	TCCRAC	2 cut(s)	1761, 2145
MroXI	GAANNNNTTC	2 cut(s)	406, 1314
MseI	TTAA	7 cut(s)	1152, 1461, 1746, 1805, 2037, 2145, 2486
MslI	CAYNNNNRTG	6 cut(s)	225, 736, 1416, 1437, 2850, 3224
MspA1I	CMGCKG	1 cut(s)	1850
MspI	CCGG	1 cut(s)	2510
MunI	CAATTG	2 cut(s)	261, 909
Mva1269I	GAATGC	2 cut(s)	743, 964
MvaI	CCWGG	9 cut(s)	65, 149, 275, 744, 1265, 1871, 1982, 2060, 2076
MwoI	GCNNNNNNNGC	8 cut(s)	152, 189, 851, 994, 2610, 2619, 2982, 3325
NciI	CCSGG	1 cut(s)	2511
NcoI	CCATGG	1 cut(s)	2677
NdeI	CATATG	1 cut(s)	1406
NlaIV	GGNNCC	6 cut(s)	154, 373, 748, 1223, 1394, 2080
NmuCI	GTSAC	5 cut(s)	521, 2258, 2476, 3005, 3050
NspI	RCATGY	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	2889
PagI	TCATGA	4 cut(s)	334, 822, 2560, 2845
PasI	CCCWGGG	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 33, 425
PctI	GAATGC	2 cut(s)	743, 964
PdmI	GAANNNNTTC	2 cut(s)	406, 1314
PflMI	CCANNNNNTGG	3 cut(s)	1675, 2947, 3172
PfoI	TCCNGGA	1 cut(s)	2058
PleI	GAGTC	6 cut(s)	339, 518, 1085, 1439, 1847, 3230
PpsI	GAGTC	6 cut(s)	339, 518, 1085, 1439, 1847, 3230
PshBI	ATTAAT	1 cut(s)	1152
PsiI	TTATAA	1 cut(s)	582
Psp124BI	GAGCTC	2 cut(s)	1683, 1818
Psp6I	CCWGG	9 cut(s)	63, 147, 273, 742, 1263, 1869, 1980, 2058, 2074
PspGI	CCWGG	9 cut(s)	63, 147, 273, 742, 1263, 1869, 1980, 2058, 2074
PspN4I	GGNNCC	6 cut(s)	154, 373, 748, 1223, 1394, 2080
PspPI	GGNCC	3 cut(s)	61, 1934, 2603
PstNI	CAGNNNCTG	1 cut(s)	1100
PsuI	RGATCY	2 cut(s)	371, 1273
RsaI	GTAC	5 cut(s)	679, 1223, 1467, 1789, 2157
RsaNI	GTAC	5 cut(s)	678, 1222, 1466, 1788, 2156
RseI	CAYNNNNRTG	6 cut(s)	225, 736, 1416, 1437, 2850, 3224
SacI	GAGCTC	2 cut(s)	1683, 1818
SaqAI	TTAA	7 cut(s)	1152, 1461, 1746, 1805, 2037, 2145, 2486
Sau96I	GGNCC	3 cut(s)	61, 1934, 2603
SchI	GAGTC	6 cut(s)	340, 518, 1085, 1439, 1848, 3230
SduI	GDGCHC	4 cut(s)	51, 874, 1683, 1818
SfcI	CTRYAG	2 cut(s)	1941, 2208
Sfr274I	CTCGAG	1 cut(s)	2889
SinI	GGWCC	2 cut(s)	61, 1934
SlaI	CTCGAG	1 cut(s)	2889
SmiMI	CAYNNNNRTG	6 cut(s)	225, 736, 1416, 1437, 2850, 3224
SsiI	CCGC	7 cut(s)	12, 1606, 1628, 1850, 3296, 3299, 3355
SspMI	CTAG	3 cut(s)	9, 96, 3329
SstI	GAGCTC	2 cut(s)	1683, 1818
StyI	CCWWGG	1 cut(s)	2677
TaaI	ACNGT	4 cut(s)	215, 634, 2163, 3262
TaiI	ACGT	4 cut(s)	422, 2478, 2485, 3340
TaqI	TCGA	5 cut(s)	18, 27, 102, 1647, 2890
TaqII	GACCGA	1 cut(s)	49
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	4 cut(s)	15, 1853, 3301, 3358
Tru1I	TTAA	7 cut(s)	1152, 1461, 1746, 1805, 2037, 2145, 2486
Tru9I	TTAA	7 cut(s)	1152, 1461, 1746, 1805, 2037, 2145, 2486
TscAI	CASTG	9 cut(s)	468, 727, 803, 862, 1288, 1394, 1864, 2166, 2472
TseFI	GTSAC	5 cut(s)	521, 2258, 2476, 3005, 3050
TseI	GCWGC	7 cut(s)	180, 308, 1301, 2826, 3185, 3341, 3352
Tsp45I	GTSAC	5 cut(s)	521, 2258, 2476, 3005, 3050
TspGWI	ACGGA	4 cut(s)	1016, 1755, 2256, 2333
TspRI	CASTG	9 cut(s)	468, 727, 803, 862, 1288, 1394, 1864, 2166, 2472
Van91I	CCANNNNNTGG	3 cut(s)	1675, 2947, 3172
VneI	GTGCAC	1 cut(s)	870
VpaK11BI	GGWCC	2 cut(s)	61, 1934
VspI	ATTAAT	1 cut(s)	1152
XapI	RAATTY	5 cut(s)	815, 1048, 1453, 1639, 2089
XceI	RCATGY	1 cut(s)	997
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2539
XhoI	CTCGAG	1 cut(s)	2889
XmiI	GTMKAC	2 cut(s)	2270, 3249
XmnI	GAANNNNTTC	2 cut(s)	406, 1314
XspI	CTAG	3 cut(s)	9, 96, 3329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.