Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

17083075 .. 17084235

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGAGTACAATACTTGCACTTACCATTTGTTTCATTACAGGACGACACCAAAACTGGGGAGCAGTTCGCTTTTTGCCTACAGGAGACTCTGGTTTTCAGCAAATAACTGGAATTACATCTCAAACTTGTGACATTGAGCATACATCAAGAGCTTATGGCGTTGAGACTGACTTTAACTTGGCGCAAGCGGAAAATGGAAACACTGATTCATCCCCTAAACTATCAATGTGTGTCTCTGACCAATCTGAATATATAGCGGTCATTGAGAACCATCCAGTTGGGGAAGGTTTGGGTTCGAGTCAGAAAGAAGAAATGGATGTAAACCATTCTCATTCTGTGGAAAACGTCACATGTTTAATAGATGTCCTTGTTTCTGCTCCAAGCAAGATACAGGACGCTTCCATTATAGAATTAGAAGGTTCTCAAGATCATGTGCATGACGGGAACGAAAATGGAGATTCTCAAGACCATGATGCTTTCCATGATGGCAACGGAAGTTGTCAAGACCATAATCAGGTGCATGATGGCAACAAAAATGGAGGTTCTGAAGACCATGGTAAGGTGCATGATGGCAAAAATGGAGGTTCCCAAGACCATGATATAGTGCTGGATGCCAACGAAAATAGAGGTTCTCAAGACCATGATAGATTGCATCATGGCAACAAAACTACAGGTTTTCAAGACCATGATAAGGTGCATGATGTCAACGTAAATGGAGCTTCTCAAGACCATGATAAGGTACAGGATGGCAACGAAATTGGAGGCTCTCAAGACCATGATAAGGTGCTTGATGGCTACGAAAATGGAGCTTCTCAAGACCATGATAAGGTGCTTGATGGCTACGAAAATGGAGCTTCTCAAGGCCATGATGAGGTGCAGGATGGCAACGAAAATGGTGGCTTTCAGGACCATGATAAGGTGCAAGATGGCAACAGAAATGGAGCTTCTGAACACCACGGCATGGTGCAGGAAGCGGCTCCAATTCCCTCGTGCCAAGAAAATCCTGATGTACAAGCTAGATGGATCAAGACTCCGATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

349

Amino Acids

37.72

Weight (kDa)

4.61

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	964
AciI	CCGC	3 cut(s)	191, 260, 977
AclWI	GGATC	1 cut(s)	1034
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	3 cut(s)	10, 744, 1014
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	683
AluBI	AGCT	6 cut(s)	155, 722, 812, 857, 947, 1019
AluI	AGCT	6 cut(s)	155, 722, 812, 857, 947, 1019
Alw26I	GTCTC	3 cut(s)	81, 161, 241
AlwI	GGATC	1 cut(s)	1034
AoxI	GGCC	1 cut(s)	865
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	910
AvaII	GGWCC	1 cut(s)	910
BauI	CACGAG	1 cut(s)	991
BbsI	GAAGAC	1 cut(s)	558
BceAI	ACGGC	1 cut(s)	976
BcoDI	GTCTC	3 cut(s)	81, 161, 241
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	2 cut(s)	81, 672
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme18I	GGWCC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	910
BmiI	GGNNCC	2 cut(s)	589, 981
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	466, 604, 664
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	558
BpuEI	CTTGAG	7 cut(s)	411, 450, 621, 711, 756, 801, 846
BsaJI	CCNNGG	2 cut(s)	556, 958
Bse1I	ACTGG	3 cut(s)	62, 115, 278
BseDI	CCNNGG	2 cut(s)	556, 958
BseGI	GGATG	6 cut(s)	212, 274, 325, 619, 754, 889
BseNI	ACTGG	3 cut(s)	62, 115, 278
BsgI	GTGCAG	2 cut(s)	899, 989
BshFI	GGCC	1 cut(s)	867
BsmAI	GTCTC	3 cut(s)	81, 161, 241
BsnI	GGCC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	2 cut(s)	430, 1026
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	3 cut(s)	191, 260, 977
BspANI	GGCC	1 cut(s)	867
BspLI	GGNNCC	2 cut(s)	589, 981
BspPI	GGATC	1 cut(s)	1034
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	62, 115, 278
BssECI	CCNNGG	2 cut(s)	556, 958
BssMI	GATC	2 cut(s)	430, 1026
BssSI	CACGAG	1 cut(s)	991
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	991
BstAUI	TGTACA	1 cut(s)	1012
BstC8I	GCNNGC	1 cut(s)	189
BstDSI	CCRYGG	2 cut(s)	556, 958
BstF5I	GGATG	6 cut(s)	212, 274, 325, 619, 754, 889
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	433, 1029
BstMAI	GTCTC	3 cut(s)	81, 161, 241
BstMBI	GATC	2 cut(s)	430, 1026
BstNSI	RCATGY	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	81, 672
BstV2I	GAAGAC	1 cut(s)	558
BstXI	CCANNNNNNTGG	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	867
BtgI	CCRYGG	2 cut(s)	556, 958
BtsCI	GGATG	6 cut(s)	212, 274, 325, 619, 754, 889
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	910
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	9, 743, 1013
CviQI	GTAC	3 cut(s)	9, 743, 1013
DpnI	GATC	2 cut(s)	432, 1028
DpnII	GATC	2 cut(s)	430, 1026
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	6 cut(s)	199, 261, 332, 626, 761, 896
Fsp4HI	GCNGC	1 cut(s)	978
FspBI	CTAG	1 cut(s)	1020
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	867
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	5 cut(s)	89, 209, 301, 461, 1033
Hpy166II	GTNNAC	2 cut(s)	325, 709
Hpy188I	TCNGA	6 cut(s)	241, 250, 306, 550, 952, 1038
Hpy8I	GTNNAC	2 cut(s)	325, 709
HpyAV	CCTTC	2 cut(s)	281, 413
HpyCH4IV	ACGT	2 cut(s)	348, 711
HpySE526I	ACGT	2 cut(s)	348, 711
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	430, 1026
LmnI	GCTCC	7 cut(s)	62, 385, 719, 809, 854, 944, 985
LweI	GCATC	3 cut(s)	466, 604, 664
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	2 cut(s)	348, 711
MaeIII	GTNAC	2 cut(s)	131, 349
MalI	GATC	2 cut(s)	432, 1028
MboI	GATC	2 cut(s)	430, 1026
MboII	GAAGA	2 cut(s)	323, 563
MluCI	AATT	4 cut(s)	114, 413, 759, 984
MlyI	GAGTC	3 cut(s)	83, 310, 1027
MnlI	CCTC	6 cut(s)	536, 578, 623, 758, 868, 1000
MseI	TTAA	2 cut(s)	177, 359
MslI	CAYNNNNRTG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	2 cut(s)	430, 1026
NlaIV	GGNNCC	2 cut(s)	589, 981
NmuCI	GTSAC	2 cut(s)	131, 349
NspI	RCATGY	1 cut(s)	357
PciI	ACATGT	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	209, 461
PflMI	CCANNNNNTGG	1 cut(s)	964
PkrI	GCNGC	1 cut(s)	979
PleI	GAGTC	3 cut(s)	83, 309, 1027
PpsI	GAGTC	3 cut(s)	83, 309, 1027
PscI	ACATGT	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	589, 981
PspPI	GGNCC	1 cut(s)	910
RsaI	GTAC	3 cut(s)	10, 744, 1014
RsaNI	GTAC	3 cut(s)	9, 743, 1013
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	177, 359
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	2 cut(s)	430, 1026
Sau96I	GGNCC	1 cut(s)	910
SchI	GAGTC	3 cut(s)	83, 310, 1027
SfaNI	GCATC	3 cut(s)	466, 604, 664
SfcI	CTRYAG	2 cut(s)	81, 672
SinI	GGWCC	1 cut(s)	910
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	7 cut(s)	426, 465, 636, 726, 771, 816, 861
SmoI	CTYRAG	7 cut(s)	426, 465, 636, 726, 771, 816, 861
Sse9I	AATT	4 cut(s)	114, 413, 759, 984
SsiI	CCGC	3 cut(s)	191, 260, 977
SspMI	CTAG	1 cut(s)	1020
StyI	CCWWGG	1 cut(s)	556
TaiI	ACGT	2 cut(s)	351, 714
TaqI	TCGA	1 cut(s)	299
TasI	AATT	4 cut(s)	114, 413, 759, 984
TatI	WGTACW	2 cut(s)	8, 1012
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	2 cut(s)	209, 461
Tru1I	TTAA	2 cut(s)	177, 359
Tru9I	TTAA	2 cut(s)	177, 359
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	131, 349
Tsp45I	GTSAC	2 cut(s)	131, 349
TspDTI	ATGAA	2 cut(s)	25, 201
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	964
VpaK11BI	GGWCC	1 cut(s)	910
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.