AT1G10720

BSD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010000
Physical Location & Seq
Forward (+)
3562841 .. 3564850
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10720.1

Sequence Viewer

Length: 1290 bp
ATGTTTTCGAATTTTTTGGAAAGCTTATACGATGGAATCGGAGACGATGACGCCGCCGACGACGACGAAGACAACAACAACGACGAGAAAACCCCGAAAGCCTCAACGGAAAGACACGATTTCTCGAGAAACGCCGTTCGTTTGTCACCGGAAGAGGAGGCTCAAGCGCGTGGGGTTAAAGATGATTTGACGGAACTTGGTCATACCCTCACGCGTCAATTTCGTGGTGTGGCTAACTTTCTCGCTCCGTTACCTGATGGATCTTCTTCTTCTTCCTCCGATCTATCGAACCATCCCAGGTTTAACCAATCTCGGTCTTCAGATCCTGGATTGAATCAATCGCGTTCTTCAGATCGGGACGAATCGTGTGTTGGAAGTGATACGCCGGAGACTGGAATTAGGTTTAGGAGCTGGGATTTAGAAGAAAAATTGGCAGAAGGCAATGATCCGGAGGATGAGGAAGAAGAAGAAGAGGAAACAGATGAAGAAGAAGAAGAAGAAGAAGAGATCGCTGCGGTTGCTCTTACAGACGAAGTGCTAGCATTTGCGAGGAACATAGCAATGCATCCAGAAACTTGGTTGGATTTTCCTCTTGATCCTGACGAAGATCTTGATGATTTGGAAATGAGTGATGCTCAAAGAGGTCATGCTTTAGCTATTGAGCGTCTTGCTCCGAGGTTAGCTGCATTGAGAATAGAGCTTTGTCCATGTCATATGAGTGTTGGTTACTTCTGGAAAGTCTATTTTGTTCTTCTTCTTTCAAGGCTCAATAAACACGATGCTCATCTTTTGTCTTCTCCACAGGTGATGGAAGCTAGAGCATTGTGGATGAAAGAGCTTCAGAATCAGACACATTCTTCAAAAGAAAGTAGAGATATGATTCTTGAGGAAGAAGATATTACACCATCAACTTCTAATTACTACAACCATGCTCCTCCTGAGTTTCTTTCTCCAAGAATATATGCTTTTGAACCTCCTTCGATTATGTATCGCGATTTTGAACACGGGTTTGAAAACGCTCAGTTCATCGATAAAGCTGTTATTGAGGAAAAACCAATCCAGAAGAACGACAAAAATAGTGCAAGCCTTAGCCAAACATCTAAAGATGTTGTTGATGATGATGATGATGATTGGCCAGAAGAAGAAGATTCTGCTAATTCTTGGGCTCCAATGTTTACAGTGAATGAGGATGATGTTTCTTTCAGTGATCTTGAAGGAGACGACGATATAAGTAGCTTAGCACTCAAGTCTAAGATTACATCAAAGGGCACAGACCAAAAAGGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

429

Amino Acids

48.47

Weight (kDa)

4.23

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 205 - 260 4.3e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 169, 214, 343, 993
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 2 cut(s) 54, 515
AclWI GGATC 4 cut(s) 268, 317, 440, 590
AcoI YGGCCR 1 cut(s) 1133
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 3 cut(s) 303, 333, 824
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 7 cut(s) 334, 762, 861, 971, 1001, 1013, 1214
AjnI CCWGG 2 cut(s) 296, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 9 cut(s) 24, 411, 656, 683, 700, 815, 838, 1037, 1236
AluI AGCT 9 cut(s) 24, 411, 656, 683, 700, 815, 838, 1037, 1236
Alw26I GTCTC 3 cut(s) 36, 383, 1212
AlwI GGATC 4 cut(s) 268, 317, 440, 590
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 1 cut(s) 1133
ApeKI GCWGC 2 cut(s) 512, 683
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 138, 817
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 1271
BalI TGGCCA 1 cut(s) 1135
BanII GRGCYC 1 cut(s) 1168
BbsI GAAGAC 3 cut(s) 75, 309, 786
BbvI GCAGC 2 cut(s) 499, 670
BccI CCATC 5 cut(s) 26, 251, 300, 802, 913
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 298, 327
BcoDI GTCTC 3 cut(s) 36, 383, 1212
BfaI CTAG 2 cut(s) 539, 816
BglII AGATCT 1 cut(s) 607
BisI GCNGC 3 cut(s) 54, 513, 684
BlpI GCTNAGC 1 cut(s) 1237
BlsI GCNGC 3 cut(s) 55, 514, 685
Bme1390I CCNGG 2 cut(s) 298, 327
BmeT110I CYCGRG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 1167
BmrFI CCNGG 2 cut(s) 298, 327
BmsI GCATC 3 cut(s) 574, 622, 769
BmtI GCTAGC 1 cut(s) 542
BpiI GAAGAC 3 cut(s) 75, 309, 786
BplI GAGNNNNNCTC 2 cut(s) 619, 651
Bpu10I CCTNAGC 1 cut(s) 1088
Bpu1102I GCTNAGC 1 cut(s) 1237
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 3 cut(s) 147, 905, 1229
Bsa29I ATCGAT 1 cut(s) 1029
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 296, 674
BsaWI WCCGGW 2 cut(s) 148, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 2 cut(s) 448, 567
Bse8I GATNNNNATC 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 448
BseBI CCWGG 2 cut(s) 298, 327
BseCI ATCGAT 1 cut(s) 1029
BseDI CCNNGG 2 cut(s) 296, 674
BseGI GGATG 5 cut(s) 292, 460, 565, 834, 1195
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMI GCAATG 2 cut(s) 448, 567
BseMII CTCAG 2 cut(s) 930, 1034
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 2 cut(s) 170, 924
BseSI GKGCMC 1 cut(s) 1271
BseXI GCAGC 2 cut(s) 499, 670
BseYI CCCAGC 1 cut(s) 411
Bsh1236I CGCG 4 cut(s) 169, 214, 343, 993
BshFI GGCC 1 cut(s) 1135
BshVI ATCGAT 1 cut(s) 1029
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 3 cut(s) 149, 386, 449
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 3 cut(s) 36, 383, 1212
BsmBI CGTCTC 2 cut(s) 36, 1212
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 1135
BsoBI CYCGRG 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 1168, 1271
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
Bsp1720I GCTNAGC 1 cut(s) 1237
Bsp68I TCGCGA 1 cut(s) 993
BspACI CCGC 2 cut(s) 54, 515
BspANI GGCC 1 cut(s) 1135
BspCNI CTCAG 2 cut(s) 931, 1033
BspDI ATCGAT 1 cut(s) 1029
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 4 cut(s) 169, 214, 343, 993
BspLI GGNNCC 1 cut(s) 1167
BspOI GCTAGC 1 cut(s) 542
BspPI GGATC 4 cut(s) 268, 317, 440, 590
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 448, 567
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 296, 674
BssMI GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 298, 327
Bst4CI ACNGT 1 cut(s) 1180
Bst6I CTCTTC 3 cut(s) 147, 465, 498
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 540, 1084
BstDEI CTNAG 5 cut(s) 939, 1020, 1088, 1237, 1251
BstF5I GGATG 5 cut(s) 292, 460, 565, 834, 1195
BstFNI CGCG 4 cut(s) 169, 214, 343, 993
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 9 cut(s) 263, 283, 325, 355, 448, 510, 598, 610, 1210
BstMAI GTCTC 3 cut(s) 36, 383, 1212
BstMBI GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 2 cut(s) 298, 327
BstSCI CCNGG 2 cut(s) 296, 325
BstSLI GKGCMC 1 cut(s) 1271
BstUI CGCG 4 cut(s) 169, 214, 343, 993
BstV1I GCAGC 2 cut(s) 499, 670
BstV2I GAAGAC 3 cut(s) 75, 309, 786
BstX2I RGATCY 3 cut(s) 260, 322, 607
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 3 cut(s) 260, 322, 607
Bsu15I ATCGAT 1 cut(s) 1029
BsuRI GGCC 1 cut(s) 1135
BsuTUI ATCGAT 1 cut(s) 1029
BtsCI GGATG 5 cut(s) 292, 460, 565, 834, 1195
BtsIMutI CAGTG 2 cut(s) 1185, 1210
BtuMI TCGCGA 1 cut(s) 993
Cac8I GCNNGC 2 cut(s) 540, 1084
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 1029
CseI GACGC 3 cut(s) 59, 203, 653
CviAII CATG 4 cut(s) 647, 708, 929, 1287
DdeI CTNAG 5 cut(s) 939, 1020, 1088, 1237, 1251
DpnI GATC 9 cut(s) 262, 282, 324, 354, 447, 509, 597, 609, 1209
DpnII GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
EaeI YGGCCR 1 cut(s) 1133
Eam1104I CTCTTC 3 cut(s) 147, 465, 498
EarI CTCTTC 3 cut(s) 147, 465, 498
Eco24I GRGCYC 1 cut(s) 1168
Eco57I CTGAAG 3 cut(s) 303, 333, 824
Eco88I CYCGRG 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 296, 325
EcoT22I ATGCAT 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 1168
Esp3I CGTCTC 2 cut(s) 36, 1212
FaeI CATG 4 cut(s) 650, 711, 932, 1290
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 646, 707, 928, 1286
FauNDI CATATG 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 54, 513, 684
FokI GGATG 5 cut(s) 279, 467, 552, 841, 1202
FriOI GRGCYC 1 cut(s) 1168
Fsp4HI GCNGC 3 cut(s) 54, 513, 684
FspBI CTAG 2 cut(s) 539, 816
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 54, 513, 684
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 1 cut(s) 1135
HapII CCGG 3 cut(s) 149, 386, 449
HgaI GACGC 3 cut(s) 59, 203, 653
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 650, 711, 932, 1290
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 6 cut(s) 36, 334, 362, 844, 880, 1148
HpaII CCGG 3 cut(s) 149, 386, 449
HphI GGTGA 2 cut(s) 138, 817
Hpy166II GTNNAC 1 cut(s) 1176
Hpy188I TCNGA 7 cut(s) 41, 280, 322, 352, 675, 843, 849
Hpy8I GTNNAC 1 cut(s) 1176
Hpy99I CGWCG 5 cut(s) 62, 65, 68, 86, 1226
HpyAV CCTTC 3 cut(s) 431, 987, 1208
HpyCH4III ACNGT 1 cut(s) 1180
HpyCH4V TGCA 3 cut(s) 565, 686, 1082
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 5 cut(s) 939, 1020, 1088, 1237, 1251
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 650, 711, 932, 1290
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 448
Kzo9I GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
LmnI GCTCC 5 cut(s) 250, 408, 676, 937, 1171
Lsp1109I GCAGC 2 cut(s) 499, 670
LweI GCATC 3 cut(s) 574, 622, 769
MaeI CTAG 2 cut(s) 539, 816
MaeIII GTNAC 3 cut(s) 144, 249, 725
MalI GATC 9 cut(s) 262, 282, 324, 354, 447, 509, 597, 609, 1209
MboI GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
MflI RGATCY 3 cut(s) 260, 322, 607
MhlI GDGCHC 2 cut(s) 1168, 1271
MlsI TGGCCA 1 cut(s) 1135
MluCI AATT 6 cut(s) 10, 218, 396, 428, 916, 1156
MluI ACGCGT 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 1135
MmeI TCCRAC 2 cut(s) 352, 561
Mox20I TGGCCA 1 cut(s) 1135
Mph1103I ATGCAT 1 cut(s) 567
MroI TCCGGA 1 cut(s) 448
MscI TGGCCA 1 cut(s) 1135
MseI TTAA 2 cut(s) 177, 303
MslI CAYNNNNRTG 2 cut(s) 560, 717
Msp20I TGGCCA 1 cut(s) 1135
MspI CCGG 3 cut(s) 149, 386, 449
MspR9I CCNGG 2 cut(s) 298, 327
MvaI CCWGG 2 cut(s) 298, 327
MvnI CGCG 4 cut(s) 169, 214, 343, 993
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeI CATATG 1 cut(s) 714
NdeII GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
NheI GCTAGC 1 cut(s) 538
NlaIII CATG 4 cut(s) 650, 711, 932, 1290
NlaIV GGNNCC 1 cut(s) 1167
NmuCI GTSAC 1 cut(s) 144
NruI TCGCGA 1 cut(s) 993
NsiI ATGCAT 1 cut(s) 567
NspV TTCGAA 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 6 cut(s) 36, 334, 362, 844, 880, 1148
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 3 cut(s) 55, 514, 685
Psp6I CCWGG 2 cut(s) 296, 325
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 2 cut(s) 296, 325
PspN4I GGNNCC 1 cut(s) 1167
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 3 cut(s) 260, 322, 607
RruI TCGCGA 1 cut(s) 993
RseI CAYNNNNRTG 2 cut(s) 560, 717
SaqAI TTAA 2 cut(s) 177, 303
SatI GCNGC 3 cut(s) 54, 513, 684
Sau3AI GATC 9 cut(s) 260, 280, 322, 352, 445, 507, 595, 607, 1207
ScrFI CCNGG 2 cut(s) 298, 327
SduI GDGCHC 2 cut(s) 1168, 1271
SfaNI GCATC 3 cut(s) 574, 622, 769
Sfr274I CTCGAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 124
SmiMI CAYNNNNRTG 2 cut(s) 560, 717
SmlI CTYRAG 4 cut(s) 124, 162, 884, 1244
SmoI CTYRAG 4 cut(s) 124, 162, 884, 1244
Sse9I AATT 6 cut(s) 10, 218, 396, 428, 916, 1156
SsiI CCGC 2 cut(s) 54, 515
SspMI CTAG 2 cut(s) 539, 816
StyD4I CCNGG 2 cut(s) 296, 325
TaaI ACNGT 1 cut(s) 1180
TaqI TCGA 5 cut(s) 8, 125, 287, 980, 1029
TaqII GACCGA 1 cut(s) 303
TasI AATT 6 cut(s) 10, 218, 396, 428, 916, 1156
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 6 cut(s) 36, 334, 362, 844, 880, 1148
Tru1I TTAA 2 cut(s) 177, 303
Tru9I TTAA 2 cut(s) 177, 303
TscAI CASTG 2 cut(s) 1185, 1210
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 512, 683
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 3 cut(s) 498, 845, 1015
TspGWI ACGGA 3 cut(s) 122, 206, 237
TspRI CASTG 2 cut(s) 1185, 1210
XapI RAATTY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 124
XspI CTAG 2 cut(s) 539, 816
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.