Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010000

Physical Location & Seq

Genomic Coordinates Forward (+)

66606248 .. 66606865

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG503900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTCCCAAAGCATTGGAACAATTTTTGAGATTTTTCCCAAGTTTAAGCAGAAAACATTTTGTTGGTGAAATCTTGCAGGTAATGGAAGCCAGAGCAATGTGGATGCAAGAGCTACAATGTCAGACTCCAACATCAATTTCTAAAATGTCAGAACATGAATGGTTTGGAAGAAGCACTTCACGTTTAAAATACAGTTCAAATGCAATACATGAAGATTATGAAGATTACTCTCCGGTCTCATCACATACTCCTCATTATGAGGATACACTTCATAAGACGTATCCTTTTGAATCAACCATGCCTTCCACAGCCGATGAGACTGAGAAGCACCCAGTTGAGAGTAATGAGATGCCATTCATTGATAAGTCCGTTATCGAAGAAAAGCCCTTCATTAGGACTGAGGATAAGAATGTGACAGTTGGTCCGTCCTCTGAGATACTAGTTAATAGCTATGACGACGATGACGATGATGACTGGCCAGAGGATGATGGTGAATTATATGGGTGTAGTGGAACAGCTGTTGCTTTGATAAATGAAGAAGACATATCTTTCAGTGATCTTGAGGATGATGATTTCCAGGCACCCGCTAAATTAAAGTTCATCTCAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

205

Amino Acids

23.59

Weight (kDa)

4.42

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10720
fragaria_vesca	FvH4_2g32800
malus_domestica	MD08G1079400.v1.1 MD08G1079700.v1.1 MD15G1066600.v1.1
prunus_persica	Prupe.1G420400_v2.0.a1
pyrus_communis	pycom08g06580 pycom15g06320
rosa_chinensis	RchiOBHm_Chr6g0309901
rosa_laevigata	RLG00000005976 RLG00000010525
rosa_multiflora	Rmu_sc0000294.1_g000003 Rmu_sc0009846.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159060
rosa_rugosa	Rorug06G0375800
rosa_samantha	Rh6AG489600 Rh6BG499000 Rh6CG503800 Rh6CG503900 Rh6DG490100
rosa_wichuraiana	Rw6G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	588
AcoI	YGGCCR	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	201, 293
AhdI	GACNNNNNGTC	1 cut(s)	423
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	579
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	3 cut(s)	115, 453, 521
AluI	AGCT	3 cut(s)	115, 453, 521
Alw26I	GTCTC	2 cut(s)	244, 314
AoxI	GGCC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	80, 506
AvaII	GGWCC	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	549
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	581
BciVI	GTATCC	2 cut(s)	259, 294
BcoDI	GTCTC	2 cut(s)	244, 314
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	2 cut(s)	259, 294
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	1 cut(s)	425
BmeRI	GACNNNNNGTC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	581
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	96, 342
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	335, 482
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	581
BseGI	GGATG	3 cut(s)	111, 493, 574
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	3 cut(s)	315, 393, 426
BseNI	ACTGG	2 cut(s)	335, 482
BseRI	GAGGAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	244, 314
BsnI	GGCC	1 cut(s)	481
Bso31I	GGTCTC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	316, 394, 427
BspLI	GGNNCC	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	335, 482
BssMI	GATC	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	197, 421
BstDEI	CTNAG	3 cut(s)	324, 402, 435
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	111, 493, 574
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	2 cut(s)	244, 314
BstMBI	GATC	1 cut(s)	559
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstV2I	GAAGAC	1 cut(s)	549
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	259, 294
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	111, 493, 574
BtsIMutI	CAGTG	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	425
CviAII	CATG	3 cut(s)	158, 212, 301
CviJI	RGCY	7 cut(s)	92, 115, 314, 388, 453, 481, 521
CviKI_1	RGCY	7 cut(s)	92, 115, 314, 388, 453, 481, 521
DdeI	CTNAG	3 cut(s)	324, 402, 435
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
DraI	TTTAAA	1 cut(s)	189
DriI	GACNNNNNGTC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	479
Eam1105I	GACNNNNNGTC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	161, 215, 304
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	3 cut(s)	157, 211, 300
FauI	CCCGC	1 cut(s)	595
FokI	GGATG	3 cut(s)	118, 500, 581
FspBI	CTAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	3 cut(s)	161, 215, 304
HinfI	GANTC	3 cut(s)	4, 127, 293
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	80, 506
Hpy188I	TCNGA	3 cut(s)	126, 154, 436
Hpy188III	TCNNGA	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	315, 400
HpyCH4III	ACNGT	2 cut(s)	197, 421
HpyCH4IV	ACGT	2 cut(s)	184, 281
HpyCH4V	TGCA	3 cut(s)	79, 109, 206
HpyF3I	CTNAG	3 cut(s)	324, 402, 435
HpySE526I	ACGT	2 cut(s)	184, 281
Hsp92II	CATG	3 cut(s)	161, 215, 304
Kzo9I	GATC	1 cut(s)	559
LpnPI	CCDG	8 cut(s)	65, 106, 249, 348, 463, 495, 566, 593
LweI	GCATC	2 cut(s)	96, 342
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	184, 281
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	6 cut(s)	183, 227, 236, 392, 551, 554
MlsI	TGGCCA	1 cut(s)	481
MluCI	AATT	4 cut(s)	23, 138, 497, 593
MluNI	TGGCCA	1 cut(s)	481
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	256, 264, 397, 442, 478, 559
Mox20I	TGGCCA	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	481
MseI	TTAA	4 cut(s)	47, 188, 447, 596
Msp20I	TGGCCA	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	581
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	3 cut(s)	161, 215, 304
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	4, 293
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	47, 188, 447, 596
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	581
SetI	ASST	6 cut(s)	84, 117, 187, 284, 455, 523
SfaNI	GCATC	2 cut(s)	96, 342
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	4 cut(s)	23, 138, 497, 593
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	197, 421
TaiI	ACGT	2 cut(s)	187, 284
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	23, 138, 497, 593
TfiI	GAWTC	2 cut(s)	4, 293
Tru1I	TTAA	4 cut(s)	47, 188, 447, 596
Tru9I	TTAA	4 cut(s)	47, 188, 447, 596
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	8 cut(s)	174, 228, 237, 263, 349, 382, 552, 592
TspGWI	ACGGA	2 cut(s)	361, 417
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.