RLG00000005976

BSD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010000
Physical Location & Seq
Forward (+)
3230221 .. 3231738
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005976

Sequence Viewer

Length: 390 bp
ATGGCGTTGAATGAAGACGAAGAAAAGGAAGAGGAGGAGGAGGAGTGCGCCGTCGGTGTCACTGACGAGGTCTTGACCTTCACTAGAAACATCGCGATGCATCCAGAGACCTGGTTGGACTTTCCTCTTGATGAAGAAGAAGACTTGGGAGATTTTGGAATGTCTGATGCCCAGCAAGAGCATTCTATGATGATTGAACATCTTGCGTCGAGATTAGCTGCTTTGAGAATCAAGCTTTGTCCGTGCCATATGAGCGAGAGTTACTTTTGGAAAGTCTATTTTGTTCTTCTGCATTCGAGGCTCAACAAGCAGGATGCTGAGGAGAATAAGAACTTGTTTCCAAAGTTTGTTGAAATTTTAATATTTTCTGGTGCAGCTATACCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

130

Amino Acids

14.98

Weight (kDa)

4.47

Isoelectric Point (pI)

79.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 51 - 105 1.8e-12 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AcsI RAATTY 1 cut(s) 354
AgsI TTSAA 3 cut(s) 10, 197, 353
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 3 cut(s) 218, 235, 377
AluI AGCT 3 cut(s) 218, 235, 377
Alw26I GTCTC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 218, 374
ApoI RAATTY 1 cut(s) 354
AspA2I CCTAGG 1 cut(s) 383
AspLEI GCGC 1 cut(s) 50
AvrII CCTAGG 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 21, 147
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 205, 386
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 84, 384
BisI GCNGC 2 cut(s) 219, 375
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 2 cut(s) 220, 376
Bme1390I CCNGG 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 4 cut(s) 87, 109, 157, 304
BpiI GAAGAC 2 cut(s) 21, 147
Bpu10I CCTNAGC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 100, 319
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 5 cut(s) 47, 50, 53, 56, 335
BseXI GCAGC 2 cut(s) 205, 386
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 181, 292
Bso31I GGTCTC 1 cut(s) 101
Bsp68I TCGCGA 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 100, 319
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 3 cut(s) 252, 298, 307
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 205, 386
BstV2I GAAGAC 2 cut(s) 21, 147
BstXI CCANNNNNNTGG 1 cut(s) 111
BtgZI GCGATG 2 cut(s) 76, 110
BtsCI GGATG 2 cut(s) 100, 319
BtsIMutI CAGTG 1 cut(s) 60
BtuMI TCGCGA 1 cut(s) 95
CfoI GCGC 1 cut(s) 50
CseI GACGC 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 110
CviJI RGCY 4 cut(s) 218, 235, 301, 377
CviKI_1 RGCY 4 cut(s) 218, 235, 301, 377
DdeI CTNAG 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 383
EcoT22I ATGCAT 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 383
FaiI YATR 4 cut(s) 188, 249, 251, 380
FauNDI CATATG 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 219, 375
FokI GGATG 2 cut(s) 87, 326
Fsp4HI GCNGC 2 cut(s) 219, 375
FspBI CTAG 2 cut(s) 84, 384
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 219, 375
GsaI CCCAGC 1 cut(s) 175
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 5 cut(s) 73, 94, 104, 128, 210
Hpy99I CGWCG 2 cut(s) 56, 211
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 100, 292, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 298, 307
HpyF3I CTNAG 1 cut(s) 318
HspAI GCGC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 97, 117, 124, 185, 296, 354
Lsp1109I GCAGC 2 cut(s) 205, 386
LweI GCATC 4 cut(s) 87, 109, 157, 304
MabI ACCWGGT 1 cut(s) 110
MaeI CTAG 2 cut(s) 84, 384
MaeIII GTNAC 2 cut(s) 58, 260
MboII GAAGA 7 cut(s) 26, 32, 41, 146, 149, 152, 278
MluCI AATT 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 25, 28, 31, 34, 61, 135, 291, 313
Mph1103I ATGCAT 1 cut(s) 102
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 112
Mva1269I GAATGC 2 cut(s) 181, 292
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 252, 298, 307
NdeI CATATG 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 58
NruI TCGCGA 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 102
PctI GAATGC 2 cut(s) 181, 292
PfeI GAWTC 1 cut(s) 228
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 220, 376
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 68
RruI TCGCGA 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 219, 375
ScrFI CCNGG 1 cut(s) 112
SetI ASST 8 cut(s) 72, 80, 113, 220, 237, 379, 385, 389
SexAI ACCWGGT 1 cut(s) 110
SfaNI GCATC 4 cut(s) 87, 109, 157, 304
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 1 cut(s) 354
SspI AATATT 1 cut(s) 363
SspMI CTAG 2 cut(s) 84, 384
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 383
TaqI TCGA 2 cut(s) 209, 296
TasI AATT 1 cut(s) 354
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 218, 374
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 27, 147
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 68
XapI RAATTY 1 cut(s) 354
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 2 cut(s) 84, 384
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.