AT1G11770

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3975607 .. 3977379
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11770.1

Sequence Viewer

Length: 1611 bp
ATGAAGATCTTTTGTTTAATTCTCTTCTTAATCTCCTCCTTCATCTCTACTTCTCTTGCCGTCGAACCTCCGCCTGAAACAATCTACCAAAACTTTCTCCAATGTTTCACAAACCAAACAAAAGCTCCTCCTAACTCATTAGCCGACGTCGTTTTACCAAAAACCGCTGCCGCTTTCACCCCCGTCTTACGCGCTTACATCCGTAACGCGCGTTTCAACACCACAGCGACTCCGAAACCCGCGATCGTAATCGCGGCGCGTTCCGAGAGTCACGTCCAAGCTGCCGTCATCTGCACGAAATCGCTAAACATCCAACTGAAAACTCGAAGCGGTGGTCATGACTACGAAGGTGTTTCCTACATCTCTCACGTTCCTTTCTTCGTCCTCGACATGTCAAATCTCCGTAACATCACCGTCGACCCCGCCACAGAGTCTGCATGGGTCGGTGCCGGTGCAACACTCGGTGAAGTTTACTACAGGATTTGGGAAAAAACCAAAAGTCATGGATTCCCCGCCGGAGTTTGTCCCACGGTTGGAGCCGGAGGTCACATTAGCGGTGGTGGCTACGGAAACATGATCCGAAAATACGGACTCTCCGTTGATTACGTCACCGACGCCAAAATCGTTGATGTTAATGGACAGGTTCTTGATCGGAAAGGAATGGGAGAAGACATGTTTTGGGCCATTAACGGTGGAGGCGGTGCTAGCTTCGGTGTTATCCTAGCTTTCAAGATCAAACTCGTCCCTGTTCCACCGACCGTAACCGTTTTCAGAGTAGAGAAAAACTTAGTCGAAAATGCTACTGAAATGGTTCATAAATGGCAATTTGTTGCACCCAAGACCGATCCAGGTCTATTCATGAGGCTATTGTTGCAGCCGGTGACTAGGAATAAAATGCAAACGGTTCGAGCATCGGTTGTGGCTCTCTTCTTGGGGGACCAAAACACTGTTATGTCTATGCTAACCAAAGAATTCCCGGAGCTTGGTTTGAAGAAGGAGAACTGCACGGAGATGACTTGGATACAGTCGGTGATGTGGTGGGCAAACAACGATAACGCTACGCAGATTAAACCGGAGATTCTACTGGACCGAAACCCTGATATGGCGACTTTCGGGAAAAGGAAATCTGATTTCGTTGAGAAAGAGATCACTAAAGATGGTTTAGATTTCTTGTTCAAGAAAATGATTGAAGTTGGGAAGATAGGGTTAGTGTTTAATCCTTACGGAGGGATAATGAGTACGGTGGCTACAACGAAGACACCATTCCCACATAGGAAGAAGCTTTACAAAATCCAGCATTCGATGAACTGGAAAGATCCGGGAACCGAAGCGGAAACCAGTTTCTTGCAGAAGGCGAAAAGCTTTTATAGCTACATGGCTCCTTTTGTGACCAAGAACCCTAGACACACTTATATCAATTACAGGGATCTGGATATTGGAGTTAATACCCCTGGCCCAAACAGTTACAGAGTAGCAGAGGTTTTCGGGAGGATGTATTTCGGTGAAAATTTTGATCGGTTGGTGAAAGTGAAAACTGCTGTGGATCCGCAAAATTTCTTCAGAGACGAACAGAGTATACCTACCTTGCCTGGCAAGCCAGCTAGGCGTTAG

Protein Analysis

536

Amino Acids

59.79

Weight (kDa)

9.41

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 80 - 216 5.1e-24 FAD binding domain
BBE PF08031 470 - 527 5.8e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 417, 1576
AccII CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
AclWI GGATC 6 cut(s) 571, 839, 1310, 1434, 1538, 1551
AcsI RAATTY 3 cut(s) 971, 1507, 1552
AcuI CTGAAG 1 cut(s) 1543
AcyI GRCGYC 2 cut(s) 147, 615
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 1240
AfiI CCNNNNNNNGG 4 cut(s) 533, 983, 1102, 1226
AflIII ACRYGT 2 cut(s) 390, 672
AgsI TTSAA 5 cut(s) 217, 730, 991, 1177, 1190
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 3 cut(s) 847, 1450, 1588
AluBI AGCT 9 cut(s) 125, 281, 708, 725, 982, 1282, 1362, 1371, 1601
AluI AGCT 9 cut(s) 125, 281, 708, 725, 982, 1282, 1362, 1371, 1601
Alw26I GTCTC 1 cut(s) 1557
AlwI GGATC 6 cut(s) 571, 839, 1310, 1434, 1538, 1551
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 681, 1453
ApeKI GCWGC 3 cut(s) 167, 281, 874
ApoI RAATTY 3 cut(s) 971, 1507, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 3 cut(s) 194, 211, 259
AspS9I GGNCC 4 cut(s) 681, 937, 1087, 1454
AsuC2I CCSGG 2 cut(s) 977, 1320
AsuHPI GGTGA 8 cut(s) 169, 403, 476, 601, 892, 1042, 1514, 1534
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 2 cut(s) 937, 1087
BamHI GGATCC 1 cut(s) 1543
BanI GGYRCC 1 cut(s) 446
BarI GAAGNNNNNNTAC 2 cut(s) 1268, 1300
BbsI GAAGAC 2 cut(s) 675, 1262
BbvI GCAGC 3 cut(s) 154, 268, 886
BccI CCATC 1 cut(s) 1151
BceAI ACGGC 2 cut(s) 44, 269
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 3 cut(s) 849, 1452, 1590
BciVI GTATCC 1 cut(s) 1014
BcnI CCSGG 2 cut(s) 977, 1320
BcoDI GTCTC 1 cut(s) 1557
BfaI CTAG 5 cut(s) 705, 722, 885, 1401, 1602
BfmI CTRYAG 1 cut(s) 475
BfuI GTATCC 1 cut(s) 1014
BglI GCCNNNNNGGC 1 cut(s) 1603
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 168, 171, 255, 282, 875
BlsI GCNGC 5 cut(s) 169, 172, 256, 283, 876
Bme1390I CCNGG 5 cut(s) 849, 977, 1320, 1452, 1590
Bme18I GGWCC 2 cut(s) 937, 1087
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 4 cut(s) 681, 937, 1087, 1454
BmiI GGNNCC 6 cut(s) 448, 538, 938, 1324, 1380, 1545
BmrFI CCNGG 5 cut(s) 849, 977, 1320, 1452, 1590
BmsI GCATC 1 cut(s) 920
BmtI GCTAGC 1 cut(s) 708
BpiI GAAGAC 2 cut(s) 675, 1262
BpuMI CCSGG 2 cut(s) 977, 1320
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 147, 615
BsaJI CCNNGG 2 cut(s) 528, 1450
BsaWI WCCGGW 1 cut(s) 1072
BsaXI ACNNNNNCTCC 6 cut(s) 109, 139, 214, 244, 578, 608
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 983, 1102, 1226
Bse118I RCCGGY 2 cut(s) 449, 877
Bse1I ACTGG 3 cut(s) 1089, 1313, 1338
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 3 cut(s) 849, 1452, 1590
BseDI CCNNGG 2 cut(s) 528, 1450
BseGI GGATG 3 cut(s) 198, 309, 1497
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 4 cut(s) 533, 983, 1102, 1226
BseNI ACTGG 3 cut(s) 1089, 1313, 1338
BseRI GAGGAG 2 cut(s) 25, 117
BseXI GCAGC 3 cut(s) 154, 268, 886
BsgI GTGCAG 2 cut(s) 277, 988
Bsh1236I CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
Bsh1285I CGRYCG 2 cut(s) 246, 759
BshFI GGCC 2 cut(s) 683, 1455
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 2 cut(s) 246, 759
BsiSI CCGG 7 cut(s) 450, 516, 540, 878, 977, 1073, 1319
BslFI GGGAC 3 cut(s) 510, 728, 950
BslI CCNNNNNNNGG 4 cut(s) 533, 983, 1102, 1226
BsmAI GTCTC 1 cut(s) 1557
BsmBI CGTCTC 1 cut(s) 1557
BsmFI GGGAC 3 cut(s) 510, 728, 950
BsmI GAATGC 1 cut(s) 1297
BsnI GGCC 2 cut(s) 683, 1455
BspANI GGCC 2 cut(s) 683, 1455
BspFNI CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
BspHI TCATGA 2 cut(s) 337, 858
BspLI GGNNCC 6 cut(s) 448, 538, 938, 1324, 1380, 1545
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 6 cut(s) 571, 839, 1310, 1434, 1538, 1551
BspT107I GGYRCC 1 cut(s) 446
BsrFI RCCGGY 2 cut(s) 449, 877
BsrI ACTGG 3 cut(s) 1089, 1313, 1338
BssAI RCCGGY 2 cut(s) 449, 877
BssECI CCNNGG 2 cut(s) 528, 1450
BssNAI GTATAC 1 cut(s) 1577
BssNI GRCGYC 2 cut(s) 147, 615
Bst1107I GTATAC 1 cut(s) 1577
Bst2UI CCWGG 3 cut(s) 849, 1452, 1590
Bst6I CTCTTC 2 cut(s) 29, 932
BstACI GRCGYC 2 cut(s) 147, 615
BstC8I GCNNGC 3 cut(s) 706, 1595, 1599
BstDEI CTNAG 1 cut(s) 787
BstDSI CCRYGG 1 cut(s) 528
BstENI CCTNNNNNAGG 1 cut(s) 1224
BstF5I GGATG 3 cut(s) 198, 309, 1497
BstFNI CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
BstHHI GCGC 3 cut(s) 194, 211, 259
BstMAI GTCTC 1 cut(s) 1557
BstMCI CGRYCG 2 cut(s) 246, 759
BstMWI GCNNNNNNNGC 6 cut(s) 561, 705, 871, 1368, 1594, 1603
BstNI CCWGG 3 cut(s) 849, 1452, 1590
BstNSI RCATGY 2 cut(s) 394, 676
BstSCI CCNGG 5 cut(s) 847, 975, 1318, 1450, 1588
BstSFI CTRYAG 1 cut(s) 475
BstUI CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
BstV1I GCAGC 3 cut(s) 154, 268, 886
BstV2I GAAGAC 2 cut(s) 675, 1262
BstX2I RGATCY 4 cut(s) 6, 1315, 1426, 1543
BstYI RGATCY 4 cut(s) 6, 1315, 1426, 1543
BstZ17I GTATAC 1 cut(s) 1577
BsuI GTATCC 1 cut(s) 1014
BsuRI GGCC 2 cut(s) 683, 1455
BtgI CCRYGG 1 cut(s) 528
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 3 cut(s) 198, 309, 1497
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 3 cut(s) 706, 1595, 1599
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 2 cut(s) 337, 858
CfoI GCGC 3 cut(s) 194, 211, 259
Cfr10I RCCGGY 2 cut(s) 449, 877
Cfr13I GGNCC 4 cut(s) 681, 937, 1087, 1454
CseI GACGC 1 cut(s) 623
Csp6I GTAC 1 cut(s) 1239
CviAII CATG 8 cut(s) 338, 391, 438, 503, 574, 673, 859, 1375
CviQI GTAC 1 cut(s) 1239
DdeI CTNAG 1 cut(s) 787
DraIII CACNNNGTG 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 29, 932
EarI CTCTTC 2 cut(s) 29, 932
EciI GGCGGA 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 937, 1087
Eco57I CTGAAG 1 cut(s) 1543
EcoNI CCTNNNNNAGG 1 cut(s) 1224
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 3 cut(s) 847, 1450, 1588
Esp3I CGTCTC 1 cut(s) 1557
FaeI CATG 8 cut(s) 341, 394, 441, 506, 577, 676, 862, 1378
FaqI GGGAC 3 cut(s) 510, 728, 950
FatI CATG 8 cut(s) 337, 390, 437, 502, 573, 672, 858, 1374
FauI CCCGC 3 cut(s) 247, 430, 520
FblI GTMKAC 2 cut(s) 417, 1576
Fnu4HI GCNGC 5 cut(s) 168, 171, 255, 282, 875
FokI GGATG 3 cut(s) 185, 296, 1504
Fsp4HI GCNGC 5 cut(s) 168, 171, 255, 282, 875
FspBI CTAG 5 cut(s) 705, 722, 885, 1401, 1602
GlaI GCGC 3 cut(s) 193, 210, 258
GluI GCNGC 5 cut(s) 168, 171, 255, 282, 875
HaeIII GGCC 2 cut(s) 683, 1455
HapII CCGG 7 cut(s) 450, 516, 540, 878, 977, 1073, 1319
HgaI GACGC 1 cut(s) 623
HhaI GCGC 3 cut(s) 194, 211, 259
Hin1I GRCGYC 2 cut(s) 147, 615
Hin1II CATG 8 cut(s) 341, 394, 441, 506, 577, 676, 862, 1378
Hin6I GCGC 3 cut(s) 192, 209, 257
HinP1I GCGC 3 cut(s) 192, 209, 257
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 2 cut(s) 1280, 1360
HinfI GANTC 6 cut(s) 229, 268, 431, 507, 591, 1078
HpaII CCGG 7 cut(s) 450, 516, 540, 878, 977, 1073, 1319
HphI GGTGA 8 cut(s) 169, 403, 476, 601, 892, 1042, 1514, 1534
Hpy166II GTNNAC 3 cut(s) 418, 472, 1577
Hpy188I TCNGA 7 cut(s) 234, 265, 581, 654, 773, 1129, 1562
Hpy188III TCNNGA 8 cut(s) 338, 647, 730, 859, 1114, 1177, 1430, 1486
Hpy8I GTNNAC 3 cut(s) 418, 472, 1577
Hpy99I CGWCG 5 cut(s) 65, 149, 152, 419, 617
HpyAV CCTTC 4 cut(s) 49, 341, 988, 1345
HpyCH4IV ACGT 4 cut(s) 147, 273, 369, 606
HpyCH4V TGCA 8 cut(s) 294, 437, 455, 833, 874, 898, 1005, 1348
HpyF10VI GCNNNNNNNGC 6 cut(s) 561, 705, 871, 1368, 1594, 1603
HpyF3I CTNAG 1 cut(s) 787
HpySE526I ACGT 4 cut(s) 147, 273, 369, 606
Hsp92I GRCGYC 2 cut(s) 147, 615
Hsp92II CATG 8 cut(s) 341, 394, 441, 506, 577, 676, 862, 1378
HspAI GCGC 3 cut(s) 192, 209, 257
LmnI GCTCC 4 cut(s) 130, 536, 979, 1384
Lsp1109I GCAGC 3 cut(s) 154, 268, 886
LweI GCATC 1 cut(s) 920
MaeI CTAG 5 cut(s) 705, 722, 885, 1401, 1602
MaeII ACGT 4 cut(s) 147, 273, 369, 606
MaeIII GTNAC 9 cut(s) 203, 269, 404, 545, 607, 760, 880, 1387, 1463
MflI RGATCY 4 cut(s) 6, 1315, 1426, 1543
MluCI AATT 6 cut(s) 18, 824, 971, 1417, 1507, 1552
MlyI GAGTC 4 cut(s) 223, 277, 440, 585
MmeI TCCRAC 2 cut(s) 337, 514
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 7 cut(s) 17, 29, 633, 687, 1068, 1215, 1443
MslI CAYNNNNRTG 2 cut(s) 950, 1010
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 7 cut(s) 450, 516, 540, 878, 977, 1073, 1319
MspR9I CCNGG 5 cut(s) 849, 977, 1320, 1452, 1590
Mva1269I GAATGC 1 cut(s) 1297
MvaI CCWGG 3 cut(s) 849, 1452, 1590
MvnI CGCG 6 cut(s) 192, 209, 211, 242, 254, 259
MwoI GCNNNNNNNGC 6 cut(s) 561, 705, 871, 1368, 1594, 1603
NciI CCSGG 2 cut(s) 977, 1320
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 8 cut(s) 341, 394, 441, 506, 577, 676, 862, 1378
NlaIV GGNNCC 6 cut(s) 448, 538, 938, 1324, 1380, 1545
NmuCI GTSAC 5 cut(s) 269, 545, 607, 880, 1387
NspI RCATGY 2 cut(s) 394, 676
PagI TCATGA 2 cut(s) 337, 858
PciI ACATGT 2 cut(s) 390, 672
PcsI WCGNNNNNNNCGW 2 cut(s) 594, 621
PctI GAATGC 1 cut(s) 1297
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 507, 1078
PfoI TCCNGGA 2 cut(s) 975, 1318
PkrI GCNGC 5 cut(s) 169, 172, 256, 283, 876
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 4 cut(s) 223, 276, 439, 585
PpsI GAGTC 4 cut(s) 223, 276, 439, 585
PscI ACATGT 2 cut(s) 390, 672
Psp6I CCWGG 3 cut(s) 847, 1450, 1588
PspGI CCWGG 3 cut(s) 847, 1450, 1588
PspN4I GGNNCC 6 cut(s) 448, 538, 938, 1324, 1380, 1545
PspPI GGNCC 4 cut(s) 681, 937, 1087, 1454
PsrI GAACNNNNNNTAC 2 cut(s) 1560, 1592
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 4 cut(s) 6, 1315, 1426, 1543
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 1 cut(s) 1240
RsaNI GTAC 1 cut(s) 1239
RseI CAYNNNNRTG 2 cut(s) 950, 1010
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 7 cut(s) 17, 29, 633, 687, 1068, 1215, 1443
SatI GCNGC 5 cut(s) 168, 171, 255, 282, 875
Sau96I GGNCC 4 cut(s) 681, 937, 1087, 1454
SchI GAGTC 4 cut(s) 223, 277, 440, 585
ScrFI CCNGG 5 cut(s) 849, 977, 1320, 1452, 1590
SfaNI GCATC 1 cut(s) 920
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 937, 1087
SmiMI CAYNNNNRTG 2 cut(s) 950, 1010
Sse9I AATT 6 cut(s) 18, 824, 971, 1417, 1507, 1552
SspMI CTAG 5 cut(s) 705, 722, 885, 1401, 1602
StyD4I CCNGG 5 cut(s) 847, 975, 1318, 1450, 1588
TaiI ACGT 4 cut(s) 150, 276, 372, 609
TaqI TCGA 7 cut(s) 63, 325, 387, 417, 792, 907, 1301
TaqII GACCGA 2 cut(s) 857, 1104
TasI AATT 6 cut(s) 18, 824, 971, 1417, 1507, 1552
TauI GCSGC 2 cut(s) 173, 257
TfiI GAWTC 2 cut(s) 507, 1078
Tru1I TTAA 7 cut(s) 17, 29, 633, 687, 1068, 1215, 1443
Tru9I TTAA 7 cut(s) 17, 29, 633, 687, 1068, 1215, 1443
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 5 cut(s) 269, 545, 607, 880, 1387
TseI GCWGC 3 cut(s) 167, 281, 874
Tsp45I GTSAC 5 cut(s) 269, 545, 607, 880, 1387
TspDTI ATGAA 5 cut(s) 17, 31, 803, 847, 1319
TspGWI ACGGA 7 cut(s) 191, 392, 582, 586, 603, 1022, 1239
TspRI CASTG 1 cut(s) 952
VpaK11BI GGWCC 2 cut(s) 937, 1087
XagI CCTNNNNNAGG 1 cut(s) 1224
XapI RAATTY 3 cut(s) 971, 1507, 1552
XceI RCATGY 2 cut(s) 394, 676
XmiI GTMKAC 2 cut(s) 417, 1576
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 5 cut(s) 705, 722, 885, 1401, 1602
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.