Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010203.1

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Reverse (-)

28422 .. 29255

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010203.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgagttacacagaaggtaatgcaaccgacgtcgttttgaggtggcaggaggtggcgccgaccacggtggatgatttgtggatgaggatgttgttgcagccggtgacatctccgacaaaaaagggtgagaagactgttaggatttcgattctggcccagtatttaggcaatgctaatcagttggtttctattttgggtaaggagtttcctgaattgggtttgaagaaggaggactgtttggaaatgagttggattgagtctgtgctttggtggaacgatggttcaactcccaatgtgaccaaaccagaggttttgcttgatcgaaatctcgaccaggcgagtttcgggaagaggaagtcagattacgtgcagacccggatttcgagagaagggttggagtcattgtggaagaagatgattgaaggcaagactggtttggtgttcaatccatatggtgggaaaatggctcaaatttcggcctccgatgcgccttttcctcatcgggccgggaatttgtttaagattcagtactcggtgaattgggacgttgcaggagaggaagcaactaatgagtatttgaaccaaagtagggagctttacagttttatgaccccatttgtgtccaagaatccaaggagtgctttcttgaactatagggaccttgacattggtgtcaacaattttgggaagaatagctttgaacaagggaaggtgtatggattgatgtacttcaacgacaatttcgataggttggtgaaggtgaagactgctgttgatccaggaaatttcttcaggaatgagcagagtatcccacctcttccaagtaaggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

277

Amino Acids

31.53

Weight (kDa)

6.06

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AatII	GACGTC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	455
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	3 cut(s)	471, 511, 784
AcuI	CTGAAG	1 cut(s)	775
AcyI	GRCGYC	2 cut(s)	30, 56
AfaI	GTAC	2 cut(s)	530, 728
AfiI	CCNNNNNNNGG	3 cut(s)	215, 455, 589
AgsI	TTSAA	8 cut(s)	223, 285, 422, 445, 580, 649, 701, 733
AjnI	CCWGG	2 cut(s)	333, 778
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	2 cut(s)	595, 696
AluI	AGCT	2 cut(s)	595, 696
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	3 cut(s)	153, 477, 504
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	3 cut(s)	471, 511, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AspLEI	GCGC	2 cut(s)	58, 490
AspS9I	GGNCC	3 cut(s)	154, 504, 658
AsuC2I	CCSGG	2 cut(s)	376, 508
AsuHPI	GGTGA	5 cut(s)	115, 137, 547, 766, 772
AvaII	GGWCC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	2 cut(s)	137, 770
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	335, 780
BciVI	GTATCC	1 cut(s)	818
BcnI	CCSGG	2 cut(s)	376, 508
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	4 cut(s)	335, 376, 508, 780
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	3 cut(s)	154, 504, 658
BmiI	GGNNCC	2 cut(s)	57, 659
BmrFI	CCNGG	4 cut(s)	335, 376, 508, 780
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	137, 770
BpuMI	CCSGG	2 cut(s)	376, 508
BsaAI	YACGTR	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	2 cut(s)	30, 56
BsaJI	CCNNGG	2 cut(s)	63, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 455, 589
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	157, 436
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	335, 780
BseDI	CCNNGG	2 cut(s)	63, 632
BseGI	GGATG	3 cut(s)	76, 87, 93
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	215, 455, 589
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	157, 436
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	155, 479, 506
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	101, 376, 507
BslFI	GGGAC	2 cut(s)	557, 671
BslI	CCNNNNNNNGG	3 cut(s)	215, 455, 589
BsmFI	GGGAC	2 cut(s)	557, 671
BsnI	GGCC	3 cut(s)	155, 479, 506
Bsp143I	GATC	2 cut(s)	319, 775
BspANI	GGCC	3 cut(s)	155, 479, 506
BspLI	GGNNCC	2 cut(s)	57, 659
BspPI	GGATC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	157, 436
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	63, 632
BssMI	GATC	2 cut(s)	319, 775
BssNI	GRCGYC	2 cut(s)	30, 56
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	2 cut(s)	335, 780
Bst4CI	ACNGT	4 cut(s)	67, 136, 236, 602
Bst6I	CTCTTC	2 cut(s)	344, 822
BstACI	GRCGYC	2 cut(s)	30, 56
BstBAI	YACGTR	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	76, 87, 93
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 490
BstKTI	GATC	2 cut(s)	322, 778
BstMBI	GATC	2 cut(s)	319, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	335, 780
BstSCI	CCNGG	4 cut(s)	333, 374, 506, 778
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	2 cut(s)	137, 770
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	155, 479, 506
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	76, 87, 93
CfoI	GCGC	2 cut(s)	58, 490
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	154, 504, 658
Csp6I	GTAC	2 cut(s)	529, 727
CviJI	RGCY	7 cut(s)	100, 155, 467, 479, 506, 595, 696
CviKI_1	RGCY	7 cut(s)	100, 155, 467, 479, 506, 595, 696
CviQI	GTAC	2 cut(s)	529, 727
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	2 cut(s)	321, 777
DpnII	GATC	2 cut(s)	319, 775
DrdI	GACNNNNNNGTC	1 cut(s)	671
DseDI	GACNNNNNNGTC	1 cut(s)	671
Eam1104I	CTCTTC	2 cut(s)	344, 822
EarI	CTCTTC	2 cut(s)	344, 822
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	333, 778
EcoT14I	CCWWGG	1 cut(s)	632
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	632
FaiI	YATR	5 cut(s)	451, 453, 608, 654, 717
FalI	AAGNNNNNCTT	4 cut(s)	625, 657, 680, 712
FaqI	GGGAC	2 cut(s)	557, 671
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	3 cut(s)	83, 94, 100
Fsp4HI	GCNGC	1 cut(s)	98
GlaI	GCGC	2 cut(s)	57, 489
GluI	GCNGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	155, 479, 506
HapII	CCGG	3 cut(s)	101, 376, 507
HhaI	GCGC	2 cut(s)	58, 490
Hin1I	GRCGYC	2 cut(s)	30, 56
Hin6I	GCGC	2 cut(s)	56, 488
HinP1I	GCGC	2 cut(s)	56, 488
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	5 cut(s)	148, 257, 398, 523, 628
HpaII	CCGG	3 cut(s)	101, 376, 507
HphI	GGTGA	5 cut(s)	115, 137, 547, 766, 772
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	3 cut(s)	114, 361, 484
Hpy188III	TCNNGA	6 cut(s)	209, 329, 346, 384, 646, 793
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyAV	CCTTC	6 cut(s)	8, 220, 383, 416, 703, 751
HpyCH4III	ACNGT	4 cut(s)	67, 136, 236, 602
HpyCH4IV	ACGT	3 cut(s)	30, 366, 546
HpyCH4V	TGCA	4 cut(s)	23, 97, 370, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpySE526I	ACGT	3 cut(s)	30, 366, 546
Hsp92I	GRCGYC	2 cut(s)	30, 56
HspAI	GCGC	2 cut(s)	56, 488
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	319, 775
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	3 cut(s)	30, 366, 546
MaeIII	GTNAC	3 cut(s)	5, 103, 295
MalI	GATC	2 cut(s)	321, 777
MboI	GATC	2 cut(s)	319, 775
MboII	GAAGA	9 cut(s)	142, 235, 361, 421, 424, 700, 775, 781, 809
MluCI	AATT	7 cut(s)	212, 471, 511, 538, 679, 739, 784
Mly113I	GGCGCC	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	266, 407
MmeI	TCCRAC	3 cut(s)	137, 230, 375
MseI	TTAA	1 cut(s)	519
MspI	CCGG	3 cut(s)	101, 376, 507
MspR9I	CCNGG	4 cut(s)	335, 376, 508, 780
MvaI	CCWGG	2 cut(s)	335, 780
MwoI	GCNNNNNNNGC	1 cut(s)	485
NarI	GGCGCC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	376, 508
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	319, 775
NlaIV	GGNNCC	2 cut(s)	57, 659
NmuCI	GTSAC	2 cut(s)	103, 295
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	148, 523, 628
PflMI	CCANNNNNTGG	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	265, 406
PluTI	GGCGCC	1 cut(s)	59
PpsI	GAGTC	2 cut(s)	265, 406
Ppu21I	YACGTR	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	2 cut(s)	333, 778
PspGI	CCWGG	2 cut(s)	333, 778
PspN4I	GGNNCC	2 cut(s)	57, 659
PspPI	GGNCC	3 cut(s)	154, 504, 658
PspPPI	RGGWCCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	530, 728
RsaNI	GTAC	2 cut(s)	529, 727
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	319, 775
Sau96I	GGNCC	3 cut(s)	154, 504, 658
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	266, 407
ScrFI	CCNGG	4 cut(s)	335, 376, 508, 780
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	652
SfoI	GGCGCC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	658
Sse9I	AATT	7 cut(s)	212, 471, 511, 538, 679, 739, 784
SspDI	GGCGCC	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	333, 374, 506, 778
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	4 cut(s)	67, 136, 236, 602
TaiI	ACGT	3 cut(s)	33, 369, 549
TaqI	TCGA	5 cut(s)	146, 322, 330, 383, 744
TasI	AATT	7 cut(s)	212, 471, 511, 538, 679, 739, 784
TatI	WGTACW	2 cut(s)	528, 726
TfiI	GAWTC	3 cut(s)	148, 523, 628
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	103, 295
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	2 cut(s)	103, 295
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	3 cut(s)	471, 511, 784
ZraI	GACGTC	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.