MD05G1267600.v1.1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
40281483 .. 40283117
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1267600.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGAGAGACGCAATGCCGAGGATTCTTAAACTTCTTATTTCGCTTGTCTTTCTTCAAGCTTCTGCTTCATGGGCAGCTTCGGATTCTGTCTATGACAGCTTCCTCCAATGCCTAAAAACCAAAACAAACTCAGCCAACACATCCCAATTATCCAACATAGTCTATGCCCGAAACAACCCTTCATATACACCAGTTTTACAAGCCTACATCAGAAACTCCAGGTTCAACAAAACCTCCACCCCAAAACCACTCCTCATTGTCACACCCTTAACTGAATCCCATGTCCAGGCCTCCGTCCTCTGCGCCAAGCTCGCCGGTTTACAGCTCAAAATCCGAAGCGGCGGGCACGATTATGAGGGCATTTCTTACTGGTCTAGCCAGAAATTTATTGTTCTTGACATGTTTAATCTCAGGTCGATCAAGGTGGACATTAAGGACAACTCCGTTTGGGCTCAGTCCGGCACTACGCTCGGAGAGTTGTACTATAGGATTTGGGAGCAGAGTAAAGTCCATGCCTTTCCGGCGGGGATTTGCCAACTGGTTGGTGTTGGTGGGCACATAAGTGGTGGCGGATATGGTAACTTGTTGAGGAAGTATGGTCTTGCTGTTGATAATGTCCTTGATGCTCAGATTGTCAATGCCAAAGGCGAACTTCTCGACCGAAAATCGATGGGGGAGGACTTGTTTTGGGCTATTAAAGGAGGAGGTGGAGGAAGCTTTGGTGTCATTATTTCGTACAAGTTGAAATTGGTTTCTGTCCCGGAAGTTGTTACAATTTTTCGGGTTGAGAAAACGTTGGAGCAGAATGCAACCGCCCTCGTTTCTCGGTGGCAGGAGGTGGCGCCGACGACGGATGATGGGCTGTTTTTGAGGCTGTTGTTGCAGCCTGTGAGTTCTAAAGTGAAGAAGGGGGAAAAGACTATTAGAGCCTCAGTTTTGGCCGAGTTTTTAGGCAATGCTGATCAGCTTGTGAAATTGTTGGGTGAGGAGTTTCCTGAATTGGGGTTGAAGAAGGAGAATTGTACTGAGATGAGCTGGATTGAATCCGTCCTCTGGTGGGCGAATTTCGACATTGGAACCTCTCCCAAGGCGTTGCTTGACAGAATGCCAAACGATGCAAATTTCTTGAAGAGGAAGTCTGATTATGTCCAAACCCCGATTTCAAAGGACGGGTTGGAGTGGCTATGGAAAAAAATGATCGAGCTAGGGAAAACAGGACTTGTTTTCAATCCGTATGGTGGGGAAATGAGCCGGATTGCACCATCCGAGACGCCTTTTCCCCACCGTGCCGGAAACTTGTACAAAATTCAGTACTCGGTGAACTGGGAGGATGCAGGGGAAGACTTGGAGAAGAACTACACCACACAAAGCAAGAGGCTTTTCAGTTACATGACCCCATTTGTGTCAAAGAATCCAAGAAGTGCTTTTCTGAACTATAGAGACCTTGACATTGGTGCTACTTCAACTGGGGCTCCTACTTATGAAGAAGGAAAGGTTTATGGAGTGAAGTATTTCAATGACAATTTCGATAGGCTGGTGAAGGTGAAGACCGCCGTCGATCCAGAAAATTTCTTCTACAACGAGCAAAGCATCCCAATCCTTCCAAGAAAAGAATCGGAGAGCATAGGAAGTTGA

Protein Analysis

545

Amino Acids

60.8

Weight (kDa)

8.87

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 83 - 219 6e-24 FAD binding domain
BBE PF08031 475 - 532 7.3e-19 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 841
AciI CCGC 6 cut(s) 339, 342, 524, 570, 813, 1551
AclI AACGTT 1 cut(s) 794
AclWI GGATC 1 cut(s) 1553
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 5 cut(s) 383, 1063, 1120, 1305, 1567
AcyI GRCGYC 2 cut(s) 842, 1271
AfaI GTAC 5 cut(s) 482, 737, 1024, 1301, 1313
AfiI CCNNNNNNNGG 5 cut(s) 286, 1001, 1053, 1057, 1238
AflIII ACRYGT 1 cut(s) 399
AjnI CCWGG 2 cut(s) 218, 285
AleI CACNNNNGTG 1 cut(s) 561
AluBI AGCT 9 cut(s) 59, 77, 99, 310, 325, 717, 967, 1035, 1204
AluI AGCT 9 cut(s) 59, 77, 99, 310, 325, 717, 967, 1035, 1204
Alw26I GTCTC 2 cut(s) 1262, 1434
AlwI GGATC 1 cut(s) 1553
AoxI GGCC 2 cut(s) 288, 939
ApeKI GCWGC 2 cut(s) 74, 883
ApoI RAATTY 5 cut(s) 383, 1063, 1120, 1305, 1567
Asp700I GAANNNNTTC 1 cut(s) 1511
AspLEI GCGC 2 cut(s) 305, 844
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 4 cut(s) 995, 1330, 1549, 1555
BaeGI GKGCMC 2 cut(s) 348, 558
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 454, 1474
BbsI GAAGAC 2 cut(s) 1347, 1553
BbvI GCAGC 2 cut(s) 86, 895
BccI CCATC 3 cut(s) 664, 851, 1270
BceAI ACGGC 1 cut(s) 1538
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 2 cut(s) 220, 287
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 2 cut(s) 1262, 1434
BfaI CTAG 2 cut(s) 375, 1205
BfmI CTRYAG 2 cut(s) 484, 1435
BfoI RGCGCY 1 cut(s) 845
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 3 cut(s) 75, 340, 884
BlsI GCNGC 3 cut(s) 76, 341, 885
BmcAI AGTACT 1 cut(s) 1313
Bme1390I CCNGG 3 cut(s) 220, 287, 761
BmiI GGNNCC 3 cut(s) 843, 1078, 1473
BmrFI CCNGG 3 cut(s) 220, 287, 761
BmrI ACTGGG 2 cut(s) 1333, 1476
BmsI GCATC 4 cut(s) 613, 1105, 1321, 1599
BmuI ACTGGG 2 cut(s) 1333, 1476
BoxI GACNNNNGTC 1 cut(s) 1553
BpiI GAAGAC 2 cut(s) 1347, 1553
BpmI CTGGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 761
Bsa29I ATCGAT 1 cut(s) 668
BsaHI GRCGYC 2 cut(s) 842, 1271
BsaI GGTCTC 1 cut(s) 1434
BsaJI CCNNGG 2 cut(s) 17, 1086
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 668, 698, 1456, 1486
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 1001, 1053, 1057, 1238
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 5 cut(s) 191, 374, 543, 1328, 1471
Bse3DI GCAATG 2 cut(s) 18, 961
BseBI CCWGG 2 cut(s) 220, 287
BseCI ATCGAT 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 17, 1086
BseGI GGATG 5 cut(s) 140, 859, 1262, 1336, 1590
BseLI CCNNNNNNNGG 5 cut(s) 286, 1001, 1053, 1057, 1238
BseMI GCAATG 2 cut(s) 18, 961
BseMII CTCAG 6 cut(s) 144, 424, 467, 641, 945, 1017
BseNI ACTGG 5 cut(s) 191, 374, 543, 1328, 1471
BseRI GAGGAG 3 cut(s) 242, 717, 1001
BseSI GKGCMC 2 cut(s) 348, 558
BseXI GCAGC 2 cut(s) 86, 895
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 290, 941
BshNI GGYRCC 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 668
BsiEI CGRYCG 1 cut(s) 661
BsiSI CCGG 6 cut(s) 315, 459, 521, 761, 1252, 1290
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 5 cut(s) 286, 1001, 1053, 1057, 1238
BsmAI GTCTC 2 cut(s) 1262, 1434
BsmBI CGTCTC 1 cut(s) 1262
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 2 cut(s) 811, 1110
BsnI GGCC 2 cut(s) 290, 941
Bso31I GGTCTC 1 cut(s) 1434
Bsp1286I GDGCHC 4 cut(s) 348, 454, 558, 1474
Bsp1407I TGTACA 1 cut(s) 1299
Bsp143I GATC 4 cut(s) 417, 961, 1197, 1558
BspACI CCGC 6 cut(s) 339, 342, 524, 570, 813, 1551
BspANI GGCC 2 cut(s) 290, 941
BspCNI CTCAG 6 cut(s) 143, 423, 466, 640, 944, 1018
BspDI ATCGAT 1 cut(s) 668
BspLI GGNNCC 3 cut(s) 843, 1078, 1473
BspPI GGATC 1 cut(s) 1553
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 1 cut(s) 1434
BsrDI GCAATG 2 cut(s) 18, 961
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 1299
BsrI ACTGG 5 cut(s) 191, 374, 543, 1328, 1471
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 17, 1086
BssMI GATC 4 cut(s) 417, 961, 1197, 1558
BssNI GRCGYC 2 cut(s) 842, 1271
BssT1I CCWWGG 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 220, 287
Bst4CI ACNGT 1 cut(s) 1286
Bst6I CTCTTC 1 cut(s) 1124
BstACI GRCGYC 2 cut(s) 842, 1271
BstAUI TGTACA 1 cut(s) 1299
BstC8I GCNNGC 2 cut(s) 312, 344
BstDEI CTNAG 6 cut(s) 130, 410, 453, 627, 931, 1026
BstF5I GGATG 5 cut(s) 140, 859, 1262, 1336, 1590
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 2 cut(s) 305, 844
BstKTI GATC 4 cut(s) 420, 964, 1200, 1561
BstMAI GTCTC 2 cut(s) 1262, 1434
BstMBI GATC 4 cut(s) 417, 961, 1197, 1558
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 4 cut(s) 71, 311, 521, 880
BstNI CCWGG 2 cut(s) 220, 287
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 1553
BstSCI CCNGG 3 cut(s) 218, 285, 759
BstSFI CTRYAG 2 cut(s) 484, 1435
BstSLI GKGCMC 2 cut(s) 348, 558
BstV1I GCAGC 2 cut(s) 86, 895
BstV2I GAAGAC 2 cut(s) 1347, 1553
BstXI CCANNNNNNTGG 1 cut(s) 542
Bsu15I ATCGAT 1 cut(s) 668
BsuRI GGCC 2 cut(s) 290, 941
BsuTUI ATCGAT 1 cut(s) 668
BtsCI GGATG 5 cut(s) 140, 859, 1262, 1336, 1590
Cac8I GCNNGC 2 cut(s) 312, 344
CfoI GCGC 2 cut(s) 305, 844
Cfr10I RCCGGY 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 668
CseI GACGC 2 cut(s) 17, 1279
Csp6I GTAC 5 cut(s) 481, 736, 1023, 1300, 1312
CviAII CATG 5 cut(s) 69, 281, 400, 512, 1390
CviQI GTAC 5 cut(s) 481, 736, 1023, 1300, 1312
DdeI CTNAG 6 cut(s) 130, 410, 453, 627, 931, 1026
DinI GGCGCC 1 cut(s) 843
DpnI GATC 4 cut(s) 419, 963, 1199, 1560
DpnII GATC 4 cut(s) 417, 961, 1197, 1558
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 1124
EarI CTCTTC 1 cut(s) 1124
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 1086
Eco147I AGGCCT 1 cut(s) 290
Eco24I GRGCYC 2 cut(s) 454, 1474
Eco31I GGTCTC 1 cut(s) 1434
EcoRII CCWGG 2 cut(s) 218, 285
EcoT14I CCWWGG 1 cut(s) 1086
EcoT38I GRGCYC 2 cut(s) 454, 1474
EgeI GGCGCC 1 cut(s) 843
EheI GGCGCC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 1086
Esp3I CGTCTC 1 cut(s) 1262
FaeI CATG 5 cut(s) 72, 284, 403, 515, 1393
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 1408, 1440
FaqI GGGAC 1 cut(s) 743
FatI CATG 5 cut(s) 68, 280, 399, 511, 1389
FauI CCCGC 2 cut(s) 335, 517
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 3 cut(s) 75, 340, 884
FokI GGATG 5 cut(s) 127, 866, 1249, 1343, 1577
FriOI GRGCYC 2 cut(s) 454, 1474
Fsp4HI GCNGC 3 cut(s) 75, 340, 884
FspBI CTAG 2 cut(s) 375, 1205
GlaI GCGC 2 cut(s) 304, 843
GluI GCNGC 3 cut(s) 75, 340, 884
GsuI CTGGAG 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 845
HaeIII GGCC 2 cut(s) 290, 941
HapII CCGG 6 cut(s) 315, 459, 521, 761, 1252, 1290
HgaI GACGC 2 cut(s) 17, 1279
HhaI GCGC 2 cut(s) 305, 844
Hin1I GRCGYC 2 cut(s) 842, 1271
Hin1II CATG 5 cut(s) 72, 284, 403, 515, 1393
Hin6I GCGC 2 cut(s) 303, 842
HinP1I GCGC 2 cut(s) 303, 842
HindIII AAGCTT 2 cut(s) 57, 715
HinfI GANTC 6 cut(s) 22, 83, 275, 1043, 1411, 1613
HpaII CCGG 6 cut(s) 315, 459, 521, 761, 1252, 1290
HphI GGTGA 4 cut(s) 995, 1330, 1549, 1555
Hpy166II GTNNAC 3 cut(s) 320, 427, 1321
Hpy188I TCNGA 9 cut(s) 82, 212, 335, 473, 630, 1141, 1267, 1431, 1618
Hpy188III TCNNGA 5 cut(s) 395, 656, 995, 1126, 1562
Hpy8I GTNNAC 3 cut(s) 320, 427, 1321
Hpy99I CGWCG 3 cut(s) 850, 853, 1559
HpyAV CCTTC 6 cut(s) 189, 901, 1006, 1481, 1534, 1610
HpyCH4III ACNGT 1 cut(s) 1286
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 5 cut(s) 809, 883, 1118, 1259, 1334
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 311, 521, 880
HpyF3I CTNAG 6 cut(s) 130, 410, 453, 627, 931, 1026
HpySE526I ACGT 1 cut(s) 794
Hsp92I GRCGYC 2 cut(s) 842, 1271
Hsp92II CATG 5 cut(s) 72, 284, 403, 515, 1393
HspAI GCGC 2 cut(s) 303, 842
KasI GGCGCC 1 cut(s) 841
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 4 cut(s) 417, 961, 1197, 1558
LmnI GCTCC 3 cut(s) 496, 799, 1477
Lsp1109I GCAGC 2 cut(s) 86, 895
LweI GCATC 4 cut(s) 613, 1105, 1321, 1599
MaeI CTAG 2 cut(s) 375, 1205
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 4 cut(s) 259, 578, 769, 1385
MalI GATC 4 cut(s) 419, 963, 1199, 1560
MboI GATC 4 cut(s) 417, 961, 1197, 1558
MboII GAAGA 9 cut(s) 44, 916, 1021, 1141, 1352, 1363, 1496, 1558, 1564
MhlI GDGCHC 4 cut(s) 348, 454, 558, 1474
Mly113I GGCGCC 1 cut(s) 842
MmeI TCCRAC 3 cut(s) 177, 777, 1155
MroXI GAANNNNTTC 1 cut(s) 1511
MseI TTAA 5 cut(s) 27, 269, 405, 432, 696
MslI CAYNNNNRTG 2 cut(s) 351, 561
MspI CCGG 6 cut(s) 315, 459, 521, 761, 1252, 1290
MspR9I CCNGG 3 cut(s) 220, 287, 761
Mva1269I GAATGC 2 cut(s) 811, 1110
MvaI CCWGG 2 cut(s) 220, 287
MwoI GCNNNNNNNGC 4 cut(s) 71, 311, 521, 880
NarI GGCGCC 1 cut(s) 842
NciI CCSGG 1 cut(s) 761
NdeII GATC 4 cut(s) 417, 961, 1197, 1558
NlaIII CATG 5 cut(s) 72, 284, 403, 515, 1393
NlaIV GGNNCC 3 cut(s) 843, 1078, 1473
NmeAIII GCCGAG 2 cut(s) 42, 967
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 403
OliI CACNNNNGTG 1 cut(s) 561
PceI AGGCCT 1 cut(s) 290
PciI ACATGT 1 cut(s) 399
PctI GAATGC 2 cut(s) 811, 1110
PdmI GAANNNNTTC 1 cut(s) 1511
PfeI GAWTC 6 cut(s) 22, 83, 275, 1043, 1411, 1613
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 3 cut(s) 76, 341, 885
PluTI GGCGCC 1 cut(s) 845
PscI ACATGT 1 cut(s) 399
PshAI GACNNNNGTC 1 cut(s) 1553
Psp1406I AACGTT 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 218, 285
PspGI CCWGG 2 cut(s) 218, 285
PspN4I GGNNCC 3 cut(s) 843, 1078, 1473
RsaI GTAC 5 cut(s) 482, 737, 1024, 1301, 1313
RsaNI GTAC 5 cut(s) 481, 736, 1023, 1300, 1312
RseI CAYNNNNRTG 2 cut(s) 351, 561
SaqAI TTAA 5 cut(s) 27, 269, 405, 432, 696
SatI GCNGC 3 cut(s) 75, 340, 884
Sau3AI GATC 4 cut(s) 417, 961, 1197, 1558
ScaI AGTACT 1 cut(s) 1313
ScrFI CCNGG 3 cut(s) 220, 287, 761
SduI GDGCHC 4 cut(s) 348, 454, 558, 1474
SfaNI GCATC 4 cut(s) 613, 1105, 1321, 1599
SfcI CTRYAG 2 cut(s) 484, 1435
SfoI GGCGCC 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 351, 561
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 6 cut(s) 339, 342, 524, 570, 813, 1551
SspDI GGCGCC 1 cut(s) 841
SspMI CTAG 2 cut(s) 375, 1205
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 3 cut(s) 218, 285, 759
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 1 cut(s) 1286
TaiI ACGT 1 cut(s) 797
TaqI TCGA 7 cut(s) 416, 657, 668, 1068, 1200, 1527, 1557
TaqII GACCGA 1 cut(s) 675
TatI WGTACW 4 cut(s) 480, 1022, 1299, 1311
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 6 cut(s) 22, 83, 275, 1043, 1411, 1613
Tru1I TTAA 5 cut(s) 27, 269, 405, 432, 696
Tru9I TTAA 5 cut(s) 27, 269, 405, 432, 696
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 74, 883
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 57, 171, 1497
TspGWI ACGGA 5 cut(s) 283, 433, 866, 1036, 1221
XapI RAATTY 5 cut(s) 383, 1063, 1120, 1305, 1567
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 1511
XspI CTAG 2 cut(s) 375, 1205
ZrmI AGTACT 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.