Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Reverse (-)

6490125 .. 6493462

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGACGACACGATCTCTTCACACTACATTCCTCTCCTCTGTTCTTCTCCTGCTTCTCCTTCTTCACGTCTCTGCAACCTCCGCTTCTCTCTATGACGACTTCGTCCAATGCCTCAACACCCACCCAAACTCTTCAGCCTCCCAAATAGTCATCCCCCAAAACAACCCTTCTTTCACTTCAACTCTCAGAGCCTACATCCGTAACGCTCGCTTCAACACCACCTCGACTCCAAAACCAGTTCTCATCCTAACGCCGACGACGGAGTCCCACGTCCAGGCCTCCGTCCTCTGCGCCAAGAAACTCAATGTCCAACTCAAAATCCGAAGCGGCGGACACGACTACGAAGGTAGATCTTACGTCTCGACGGAACCCACTTTCGTTGTCCTCGACCTGTTTAACTTCCGGTCAATCGACGTGAACGCCGAGGCCGGCTACGCGTGGGCCCAGGCCGGCGCGACTCTTGGGGAGTTGTACTACAGGATCGCCGAGAAGAGTAAAACGCTCGGGTTTCCCGCTGGGATTTGTCCCACGGTCGGTGTCGGTGGACACGTCAGCGGCGGCGGTTATGGGAACTTGTTGAGGAAGTACGGCCTTGCCGTCGATAATGTGTTGGATGCATTGATTGTTGATGTGAACGGGAAGCTTCTGGATAGAAAAACAATGGGGGAGGATTTGTTTTGGGCTATCAGAGGCGGCGGTGGAGGAAGCTTTGGAGTGATCTTGTCTTATAAGTTGAAGCTAGTTCCGGTGCCGGAAACGGTTACGGTTTTCCGGGTGATGAGTTACACGGAGAGTAATGCAACCGACGTCGTTTTGAGGTGGCAGGAGGTGGCGCCGAGTACGGTGGATGATTTGTGGATGAGGATGTTGGTGCAGCCGGTGACTTCTCCGACCAAGAAGGGAACCAAGACTGTGAGGATTTCGGTTCTGGCCCAGTATCTAGGCAATGCTAATCAGTTAGTTTCTATTTTGGGTAAGGAGTTTCCTGAATTGAGTTTGAAGAAGGAGGACTGTTTGGAAGTGAGTTGGATTGAGTCTGTGGTTTGGTGGAACGATGGTTCTACTCCCAATACGACTAAACCGGAGGTTTTGCTTGATCGAAATCTAGACCAGGCGAGTTTTGGGAAGAGGAAGTCAGATTACGTGCAGACCCCGATTTCGAGAGAAGGGTTGGAGTCATTGTGGAACAAGATGATTGAAGGGAAGACTGGTTTAGTGTTCAATCCATATGGTGGGAAAATGGCTCAAATTCCGGCCTCTGATGCGCCTTTTCCTCACCGGACCGGGAATTTGTTTAAGATTCAGTACTCGGTGAATTGGGACGATGGAGGAGAGGAAGCAATTAATATGTATTTGAACCAAAGTAGGGTGCTTTACAGTTTTATGACTCCATTTGTGTCCAAGAATCCAAGGAGTGCTTTCTTGAACTATAGGGACCTCGACATTGGTGTTAACGATTTTGGGAAGGATAGCTATGAACAGGGGAAGGTGTATGGATTGATGTACTTCAACGACAATTTCGACAGATTGGTGAAGGTGAAGACTGCTGTTGATCCAGAAAATTTCTTCAGGAATGAGCAGAGTATCCCACCTCTTCCAAGATTCCACTTAGCTGTGACTAGTGGATCAACTTCAAAACTCTCAATGGGGATGCGGCTGGCTTTTCTGCTATACCTGCCTATAGGAGCCCCATTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

567

Amino Acids

62.69

Weight (kDa)

8.59

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	81 - 216	1.2e-26	FAD binding domain
BBE	PF08031	473 - 530	3.9e-18	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	729, 1699
AasI	GACNNNNNNGTC	2 cut(s)	101, 262
AatII	GACGTC	1 cut(s)	810
Acc36I	ACCTGC	1 cut(s)	1683
AccB1I	GGYRCC	2 cut(s)	748, 832
AccB7I	CCANNNNNTGG	1 cut(s)	1232
AccII	CGCG	2 cut(s)	437, 455
AclWI	GGATC	3 cut(s)	488, 1547, 1633
AcsI	RAATTY	3 cut(s)	1248, 1288, 1561
AcuI	CTGAAG	2 cut(s)	117, 1552
AcyI	GRCGYC	2 cut(s)	807, 833
AfaI	GTAC	5 cut(s)	473, 587, 841, 1307, 1505
AfiI	CCNNNNNNNGG	4 cut(s)	274, 533, 1232, 1366
AflIII	ACRYGT	2 cut(s)	435, 547
AhlI	ACTAGT	1 cut(s)	1619
AjiI	CACGTC	4 cut(s)	67, 271, 415, 550
AjnI	CCWGG	3 cut(s)	273, 444, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	1042, 1074
AluBI	AGCT	5 cut(s)	643, 708, 739, 1473, 1613
AluI	AGCT	5 cut(s)	643, 708, 739, 1473, 1613
Alw26I	GTCTC	2 cut(s)	73, 364
AlwI	GGATC	3 cut(s)	488, 1547, 1633
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	7 cut(s)	276, 426, 441, 447, 589, 930, 1254
ApaI	GGGCCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	3 cut(s)	1248, 1288, 1561
ArsI	GACNNNNNNTTYG	4 cut(s)	1141, 1173, 1273, 1305
AseI	ATTAAT	1 cut(s)	1344
AspLEI	GCGC	4 cut(s)	293, 455, 835, 1267
AspS9I	GGNCC	5 cut(s)	441, 442, 931, 1281, 1435
AsuC2I	CCSGG	2 cut(s)	773, 1285
AsuHPI	GGTGA	6 cut(s)	787, 892, 1268, 1324, 1543, 1549
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	1281, 1435
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	748, 832
BanII	GRGCYC	2 cut(s)	445, 1690
BarI	GAAGNNNNNNTAC	2 cut(s)	1124, 1156
BbsI	GAAGAC	2 cut(s)	1211, 1547
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	2 cut(s)	1049, 1319
BceAI	ACGGC	2 cut(s)	581, 604
BciT130I	CCWGG	3 cut(s)	275, 446, 1112
BciVI	GTATCC	1 cut(s)	1595
BcnI	CCSGG	2 cut(s)	773, 1285
BcoDI	GTCTC	2 cut(s)	73, 364
BcuI	ACTAGT	1 cut(s)	1619
BfaI	CTAG	4 cut(s)	740, 941, 1106, 1620
BfmI	CTRYAG	3 cut(s)	475, 1429, 1680
BfoI	RGCGCY	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	1683
BfuI	GTATCC	1 cut(s)	1595
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	6 cut(s)	328, 556, 559, 694, 875, 1655
BlsI	GCNGC	6 cut(s)	329, 557, 560, 695, 876, 1656
BmcAI	AGTACT	1 cut(s)	1307
Bme1390I	CCNGG	5 cut(s)	275, 446, 773, 1112, 1285
Bme18I	GGWCC	2 cut(s)	1281, 1435
BmeT110I	CYCGRG	1 cut(s)	503
BmgBI	CACGTC	4 cut(s)	67, 271, 415, 550
BmgT120I	GGNCC	5 cut(s)	441, 442, 931, 1281, 1435
BmiI	GGNNCC	7 cut(s)	369, 443, 750, 834, 904, 1436, 1687
BmrFI	CCNGG	5 cut(s)	275, 446, 773, 1112, 1285
BmrI	ACTGGG	1 cut(s)	928
BmsI	GCATC	3 cut(s)	604, 1252, 1641
BmuI	ACTGGG	1 cut(s)	928
BpiI	GAAGAC	2 cut(s)	1211, 1547
BpuMI	CCSGG	2 cut(s)	773, 1285
BsaAI	YACGTR	1 cut(s)	1144
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaHI	GRCGYC	2 cut(s)	807, 833
BsaJI	CCNNGG	4 cut(s)	423, 444, 528, 1409
BsaWI	WCCGGW	4 cut(s)	402, 745, 1081, 1278
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 659, 689, 1166, 1196
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 533, 1232, 1366
Bse118I	RCCGGY	3 cut(s)	428, 449, 877
Bse1I	ACTGG	3 cut(s)	236, 934, 1213
Bse3DI	GCAATG	1 cut(s)	952
Bse8I	GATNNNNATC	1 cut(s)	1101
BseBI	CCWGG	3 cut(s)	275, 446, 1112
BseDI	CCNNGG	4 cut(s)	423, 444, 528, 1409
BseGI	GGATG	8 cut(s)	150, 195, 243, 619, 853, 864, 870, 1656
BseJI	GATNNNNATC	1 cut(s)	1101
BseLI	CCNNNNNNNGG	4 cut(s)	274, 533, 1232, 1366
BseMI	GCAATG	1 cut(s)	952
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	3 cut(s)	236, 934, 1213
BseRI	GAGGAG	2 cut(s)	25, 1344
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	886
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	2 cut(s)	893, 1166
Bsh1236I	CGCG	2 cut(s)	437, 455
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	7 cut(s)	278, 428, 443, 449, 591, 932, 1256
BshNI	GGYRCC	2 cut(s)	748, 832
BsiEI	CGRYCG	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	503
BslFI	GGGAC	4 cut(s)	250, 510, 1334, 1448
BslI	CCNNNNNNNGG	4 cut(s)	274, 533, 1232, 1366
BsmAI	GTCTC	2 cut(s)	73, 364
BsmBI	CGTCTC	2 cut(s)	73, 364
BsmFI	GGGAC	4 cut(s)	250, 510, 1334, 1448
BsnI	GGCC	7 cut(s)	278, 428, 443, 449, 591, 932, 1256
BsoBI	CYCGRG	1 cut(s)	503
Bsp120I	GGGCCC	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	445, 1690
Bsp143I	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
BspANI	GGCC	7 cut(s)	278, 428, 443, 449, 591, 932, 1256
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	437, 455
BspLI	GGNNCC	7 cut(s)	369, 443, 750, 834, 904, 1436, 1687
BspMI	ACCTGC	1 cut(s)	1683
BspPI	GGATC	3 cut(s)	488, 1547, 1633
BspT107I	GGYRCC	2 cut(s)	748, 832
BsrDI	GCAATG	1 cut(s)	952
BsrFI	RCCGGY	3 cut(s)	428, 449, 877
BsrI	ACTGG	3 cut(s)	236, 934, 1213
BssAI	RCCGGY	3 cut(s)	428, 449, 877
BssECI	CCNNGG	4 cut(s)	423, 444, 528, 1409
BssMI	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
BssNI	GRCGYC	2 cut(s)	807, 833
BssT1I	CCWWGG	1 cut(s)	1409
Bst2UI	CCWGG	3 cut(s)	275, 446, 1112
Bst4CI	ACNGT	7 cut(s)	532, 760, 766, 844, 913, 1013, 1379
Bst6I	CTCTTC	5 cut(s)	21, 136, 485, 1121, 1599
BstACI	GRCGYC	2 cut(s)	807, 833
BstBAI	YACGTR	1 cut(s)	1144
BstC8I	GCNNGC	4 cut(s)	208, 430, 451, 1659
BstDEI	CTNAG	2 cut(s)	185, 1609
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	8 cut(s)	150, 195, 243, 619, 853, 864, 870, 1656
BstFNI	CGCG	2 cut(s)	437, 455
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	4 cut(s)	293, 455, 835, 1267
BstKTI	GATC	7 cut(s)	14, 353, 483, 720, 1099, 1555, 1628
BstMAI	GTCTC	2 cut(s)	73, 364
BstMBI	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 434, 1262, 1675
BstNI	CCWGG	3 cut(s)	275, 446, 1112
BstSCI	CCNGG	5 cut(s)	273, 444, 771, 1110, 1283
BstSFI	CTRYAG	3 cut(s)	475, 1429, 1680
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	2 cut(s)	437, 455
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	2 cut(s)	1211, 1547
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	1595
BsuRI	GGCC	7 cut(s)	278, 428, 443, 449, 591, 932, 1256
BtgI	CCRYGG	1 cut(s)	528
BtrI	CACGTC	4 cut(s)	67, 271, 415, 550
BtsCI	GGATG	8 cut(s)	150, 195, 243, 619, 853, 864, 870, 1656
BveI	ACCTGC	1 cut(s)	1683
Cac8I	GCNNGC	4 cut(s)	208, 430, 451, 1659
CfoI	GCGC	4 cut(s)	293, 455, 835, 1267
Cfr10I	RCCGGY	3 cut(s)	428, 449, 877
Cfr13I	GGNCC	5 cut(s)	441, 442, 931, 1281, 1435
CpoI	CGGWCCG	1 cut(s)	1281
Csp6I	GTAC	5 cut(s)	472, 586, 840, 1306, 1504
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CspI	CGGWCCG	1 cut(s)	1281
CviQI	GTAC	5 cut(s)	472, 586, 840, 1306, 1504
DdeI	CTNAG	2 cut(s)	185, 1609
DinI	GGCGCC	1 cut(s)	834
DpnI	GATC	7 cut(s)	13, 352, 482, 719, 1098, 1554, 1627
DpnII	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
DrdI	GACNNNNNNGTC	2 cut(s)	101, 262
DseDI	GACNNNNNNGTC	2 cut(s)	101, 262
Eam1104I	CTCTTC	5 cut(s)	21, 136, 485, 1121, 1599
EarI	CTCTTC	5 cut(s)	21, 136, 485, 1121, 1599
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	1409
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	445, 1690
Eco47I	GGWCC	2 cut(s)	1281, 1435
Eco57I	CTGAAG	2 cut(s)	117, 1552
Eco88I	CYCGRG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	1435
EcoRII	CCWGG	3 cut(s)	273, 444, 1110
EcoT14I	CCWWGG	1 cut(s)	1409
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	2 cut(s)	445, 1690
EgeI	GGCGCC	1 cut(s)	834
EheI	GGCGCC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	1409
Esp3I	CGTCTC	2 cut(s)	73, 364
FalI	AAGNNNNNCTT	2 cut(s)	1402, 1434
FaqI	GGGAC	4 cut(s)	250, 510, 1334, 1448
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	1228
Fnu4HI	GCNGC	6 cut(s)	328, 556, 559, 694, 875, 1655
FokI	GGATG	8 cut(s)	137, 182, 230, 626, 860, 871, 877, 1663
FriOI	GRGCYC	2 cut(s)	445, 1690
Fsp4HI	GCNGC	6 cut(s)	328, 556, 559, 694, 875, 1655
FspBI	CTAG	4 cut(s)	740, 941, 1106, 1620
GlaI	GCGC	4 cut(s)	292, 454, 834, 1266
GluI	GCNGC	6 cut(s)	328, 556, 559, 694, 875, 1655
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	836
HaeIII	GGCC	7 cut(s)	278, 428, 443, 449, 591, 932, 1256
HhaI	GCGC	4 cut(s)	293, 455, 835, 1267
Hin1I	GRCGYC	2 cut(s)	807, 833
Hin6I	GCGC	4 cut(s)	291, 453, 833, 1265
HinP1I	GCGC	4 cut(s)	291, 453, 833, 1265
HincII	GTYRAC	1 cut(s)	1453
HindII	GTYRAC	1 cut(s)	1453
HindIII	AAGCTT	2 cut(s)	641, 706
HinfI	GANTC	9 cut(s)	226, 263, 457, 1034, 1175, 1300, 1387, 1405, 1602
HpaI	GTTAAC	1 cut(s)	1453
HphI	GGTGA	6 cut(s)	787, 892, 1268, 1324, 1543, 1549
Hpy166II	GTNNAC	4 cut(s)	418, 545, 634, 1453
Hpy188I	TCNGA	6 cut(s)	188, 323, 689, 891, 1138, 1261
Hpy188III	TCNNGA	8 cut(s)	361, 647, 986, 1106, 1161, 1423, 1556, 1570
Hpy8I	GTNNAC	4 cut(s)	418, 545, 634, 1453
Hpy99I	CGWCG	7 cut(s)	259, 262, 367, 416, 602, 809, 812
HpyCH4III	ACNGT	7 cut(s)	532, 760, 766, 844, 913, 1013, 1379
HpyCH4IV	ACGT	7 cut(s)	66, 270, 357, 414, 549, 807, 1143
HpyCH4V	TGCA	5 cut(s)	74, 617, 800, 874, 1147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 434, 1262, 1675
HpyF3I	CTNAG	2 cut(s)	185, 1609
HpySE526I	ACGT	7 cut(s)	66, 270, 357, 414, 549, 807, 1143
Hsp92I	GRCGYC	2 cut(s)	807, 833
HspAI	GCGC	4 cut(s)	291, 453, 833, 1265
KasI	GGCGCC	1 cut(s)	832
KroI	GCCGGC	2 cut(s)	428, 449
KroNI	GCCGGC	2 cut(s)	430, 451
KspAI	GTTAAC	1 cut(s)	1453
Kzo9I	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
LmnI	GCTCC	1 cut(s)	1685
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	3 cut(s)	604, 1252, 1641
MaeI	CTAG	4 cut(s)	740, 941, 1106, 1620
MaeII	ACGT	7 cut(s)	66, 270, 357, 414, 549, 807, 1143
MaeIII	GTNAC	5 cut(s)	200, 760, 782, 880, 1615
MalI	GATC	7 cut(s)	13, 352, 482, 719, 1098, 1554, 1627
MboI	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	445, 1690
MluCI	AATT	7 cut(s)	989, 1248, 1288, 1315, 1341, 1516, 1561
MluI	ACGCGT	1 cut(s)	435
Mly113I	GGCGCC	1 cut(s)	833
MlyI	GAGTC	6 cut(s)	220, 272, 451, 1043, 1184, 1381
MmeI	TCCRAC	5 cut(s)	334, 591, 914, 1007, 1152
Mph1103I	ATGCAT	1 cut(s)	619
MroNI	GCCGGC	2 cut(s)	428, 449
MseI	TTAA	4 cut(s)	396, 1296, 1344, 1452
MspA1I	CMGCKG	2 cut(s)	515, 555
MspR9I	CCNGG	5 cut(s)	275, 446, 773, 1112, 1285
MvaI	CCWGG	3 cut(s)	275, 446, 1112
MvnI	CGCG	2 cut(s)	437, 455
MwoI	GCNNNNNNNGC	4 cut(s)	80, 434, 1262, 1675
NaeI	GCCGGC	2 cut(s)	430, 451
NarI	GGCGCC	1 cut(s)	833
NciI	CCSGG	2 cut(s)	773, 1285
NdeI	CATATG	1 cut(s)	1228
NdeII	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
NgoMIV	GCCGGC	2 cut(s)	428, 449
NlaIV	GGNNCC	7 cut(s)	369, 443, 750, 834, 904, 1436, 1687
NmeAIII	GCCGAG	3 cut(s)	448, 511, 861
NmuCI	GTSAC	2 cut(s)	880, 1615
NsiI	ATGCAT	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	5 cut(s)	384, 420, 546, 594, 1518
PdiI	GCCGGC	2 cut(s)	430, 451
PfeI	GAWTC	3 cut(s)	1300, 1405, 1602
PflFI	GACNNNGTC	2 cut(s)	101, 262
PflMI	CCANNNNNTGG	1 cut(s)	1232
PkrI	GCNGC	6 cut(s)	329, 557, 560, 695, 876, 1656
PleI	GAGTC	6 cut(s)	220, 271, 451, 1042, 1183, 1381
PluTI	GGCGCC	1 cut(s)	836
PpsI	GAGTC	6 cut(s)	220, 271, 451, 1042, 1183, 1381
Ppu21I	YACGTR	1 cut(s)	1144
PpuMI	RGGWCCY	1 cut(s)	1435
PshBI	ATTAAT	1 cut(s)	1344
PsiI	TTATAA	2 cut(s)	729, 1699
Psp5II	RGGWCCY	1 cut(s)	1435
Psp6I	CCWGG	3 cut(s)	273, 444, 1110
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	273, 444, 1110
PspN4I	GGNNCC	7 cut(s)	369, 443, 750, 834, 904, 1436, 1687
PspOMI	GGGCCC	1 cut(s)	441
PspPI	GGNCC	5 cut(s)	441, 442, 931, 1281, 1435
PspPPI	RGGWCCY	1 cut(s)	1435
PsuI	RGATCY	1 cut(s)	350
PsyI	GACNNNGTC	2 cut(s)	101, 262
RsaI	GTAC	5 cut(s)	473, 587, 841, 1307, 1505
RsaNI	GTAC	5 cut(s)	472, 586, 840, 1306, 1504
Rsr2I	CGGWCCG	1 cut(s)	1281
RsrII	CGGWCCG	1 cut(s)	1281
SaqAI	TTAA	4 cut(s)	396, 1296, 1344, 1452
SatI	GCNGC	6 cut(s)	328, 556, 559, 694, 875, 1655
Sau3AI	GATC	7 cut(s)	11, 350, 480, 717, 1096, 1552, 1625
Sau96I	GGNCC	5 cut(s)	441, 442, 931, 1281, 1435
ScaI	AGTACT	1 cut(s)	1307
SchI	GAGTC	6 cut(s)	220, 272, 451, 1043, 1184, 1381
ScrFI	CCNGG	5 cut(s)	275, 446, 773, 1112, 1285
SduI	GDGCHC	2 cut(s)	445, 1690
SfaNI	GCATC	3 cut(s)	604, 1252, 1641
SfcI	CTRYAG	3 cut(s)	475, 1429, 1680
SfoI	GGCGCC	1 cut(s)	834
SinI	GGWCC	2 cut(s)	1281, 1435
SpeI	ACTAGT	1 cut(s)	1619
Sse9I	AATT	7 cut(s)	989, 1248, 1288, 1315, 1341, 1516, 1561
SseBI	AGGCCT	1 cut(s)	278
SspDI	GGCGCC	1 cut(s)	832
SspMI	CTAG	4 cut(s)	740, 941, 1106, 1620
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	5 cut(s)	273, 444, 771, 1110, 1283
StyI	CCWWGG	1 cut(s)	1409
TaaI	ACNGT	7 cut(s)	532, 760, 766, 844, 913, 1013, 1379
TaiI	ACGT	7 cut(s)	69, 273, 360, 417, 552, 810, 1146
TaqI	TCGA	9 cut(s)	224, 362, 387, 411, 600, 1099, 1160, 1440, 1521
TasI	AATT	7 cut(s)	989, 1248, 1288, 1315, 1341, 1516, 1561
TatI	WGTACW	3 cut(s)	471, 1305, 1503
TauI	GCSGC	5 cut(s)	330, 558, 561, 696, 1657
TfiI	GAWTC	3 cut(s)	1300, 1405, 1602
Tru1I	TTAA	4 cut(s)	396, 1296, 1344, 1452
Tru9I	TTAA	4 cut(s)	396, 1296, 1344, 1452
TseFI	GTSAC	2 cut(s)	880, 1615
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	2 cut(s)	880, 1615
TspDTI	ATGAA	1 cut(s)	1491
TspGWI	ACGGA	5 cut(s)	188, 271, 275, 380, 803
Tth111I	GACNNNGTC	2 cut(s)	101, 262
Van91I	CCANNNNNTGG	1 cut(s)	1232
VpaK11BI	GGWCC	2 cut(s)	1281, 1435
VspI	ATTAAT	1 cut(s)	1344
XapI	RAATTY	3 cut(s)	1248, 1288, 1561
XbaI	TCTAGA	1 cut(s)	1105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XspI	CTAG	4 cut(s)	740, 941, 1106, 1620
ZraI	GACGTC	1 cut(s)	808
ZrmI	AGTACT	1 cut(s)	1307
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.