AT4G20840

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
11157916 .. 11159867
1952 bp
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UTR
Exon/CDS
Intron
AT4G20840.1

Sequence Viewer

Length: 1620 bp
ATGATTGCAACACAAACCTTTGTCTCTGTCTTTTTCTTTGTCTTCTTCCTCGTATCTCTCCCTTTCTTCTCATCCGCAGCACCTCCGTCTTCTGATTCTATCTACGAATCATTCGTTCAATGTTTCTCCGACAAGACAAAATCTCCACAAGCCCAAATCACCGACAATGTCTTCTCTCGGACAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGCAGGTTCAACACTTCATCTACGCCAAAACCAGCTATCATCGTCACTCCTCGCTCCGATATCCACGTCAGCGCCGCCGTCACTTGCTCAAAAAGTTTAAATTTCCTTCTCAAAATCCGAAGTGGTGGCCATGATTACGAAGGTCTCTCTTACATCTCTGATAAACCATTTTTTATACTCGACATGTCGAATCTCCGTGATGTCTCTGTTGATATCGCCGATCAATCAGCTTGGATCTCCGCCGGAGCAACTCTTGGTGAGGTTTATTACAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGTTTGTCCCACGGTTGGTGTTGGTGGACATATAAGCGGTGGTGGTTACGGTAATATGTTGAGGAAATTCGGATTATCAGTTGATAACTTGATCGATGCGAAGATCGTTGATGTTAACGGTCAAATTTTAGACCGGAAATCGATGGGTGAGGATCTTTTTTGGGCTATTTCCGGTGGAGGAGGGGCTAGCTTCGGCGTCGTTTTGGGTTACAAGGTCAAGCTCGTTCCTGTGCCAGAAACTGTTACAGTCTTTAGGGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAATGGCAATCCGTTGGTCCAAAAACCGACCGGAATCTATTTTTGAGAATGTTGATTCAACCGGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGAGCAGAGGAAGTTGTTGCTTTGCTTGGTAAGGAGTTTCCTGAATTGAGTTTAAAGAAGGAGAACTGTTCGGAGATGACTTGGTTTCAGTCAGCTTTATGGTGGGATAATCGTGTTAACCCTACTCAGATTGATCCTAAAGTGTTTCTCGATCGGAATCTTGATAGAGCGAATTTCGGAAAGAGGAAATCGGATTACGTTGCGAGTGAGATTCCTAGAGATGGGATTGAGTCTTTGTTCAAGAAGATGACTGAGCTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGCGGAGGTTACGGTTAACGCGACGCCGTTTCCGCACCGAAGCAAGCTTTTTAAGATTCAGTACTCGGTGACTTGGCAAGAAAACTCTGTCGAGATAGAGAAGGGTTTCTTGAATCAGGCTAACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCTAGAAATGCTTACTTGAATTACCGAGATGTCGATATAGGTGTGAATGATCATGGTACGAATAGTTATGAGGAAGGAGAAGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACAGCGGCTGATCCAGATAATTTCTTCAGGAATGAACAGAGTATACCTACCGTGCTTAGCAAGGCATAG

Protein Analysis

539

Amino Acids

60.14

Weight (kDa)

9.07

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 86 - 222 4.3e-22 FAD binding domain
BBE PF08031 476 - 533 2.1e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 818
AccI GTMKAC 1 cut(s) 1594
AccII CGCG 1 cut(s) 1274
AciI CCGC 9 cut(s) 75, 300, 465, 531, 573, 818, 1256, 1286, 1556
AclI AACGTT 1 cut(s) 1377
AclWI GGATC 4 cut(s) 467, 696, 1082, 1556
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 5 cut(s) 325, 498, 602, 660, 1126
AcuI CTGAAG 1 cut(s) 1561
AcyI GRCGYC 2 cut(s) 732, 1277
AfaI GTAC 2 cut(s) 1316, 1474
AfiI CCNNNNNNNGG 3 cut(s) 551, 1175, 1244
AflIII ACRYGT 1 cut(s) 408
AgeI ACCGGT 1 cut(s) 895
AgsI TTSAA 6 cut(s) 119, 235, 893, 1195, 1366, 1435
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 8 cut(s) 260, 455, 726, 757, 929, 1049, 1210, 1300
AluI AGCT 8 cut(s) 260, 455, 726, 757, 929, 1049, 1210, 1300
Alw26I GTCTC 3 cut(s) 28, 374, 433
AlwI GGATC 4 cut(s) 467, 696, 1082, 1556
AlwNI CAGNNNCTG 2 cut(s) 776, 1559
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 5 cut(s) 325, 498, 602, 660, 1126
AsiGI ACCGGT 1 cut(s) 895
Asp700I GAANNNNTTC 1 cut(s) 1358
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 1 cut(s) 1399
AsuHPI GGTGA 5 cut(s) 151, 494, 695, 910, 1333
AsuII TTCGAA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 722
AvaII GGWCC 1 cut(s) 851
BalI TGGCCA 1 cut(s) 354
BbsI GAAGAC 3 cut(s) 34, 81, 163
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 673, 1169
BceAI ACGGC 2 cut(s) 287, 1264
BclI TGATCA 1 cut(s) 1465
BcnI CCSGG 1 cut(s) 1399
BcoDI GTCTC 3 cut(s) 28, 374, 433
BfaI CTAG 3 cut(s) 723, 1170, 1419
BfoI RGCGCY 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 219
BisI GCNGC 3 cut(s) 78, 300, 1557
BlpI GCTNAGC 1 cut(s) 1607
BlsI GCNGC 3 cut(s) 79, 301, 1558
BmcAI AGTACT 1 cut(s) 1316
Bme1390I CCNGG 1 cut(s) 1399
Bme18I GGWCC 1 cut(s) 851
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 851
BmrFI CCNGG 1 cut(s) 1399
BmsI GCATC 1 cut(s) 622
BmtI GCTAGC 1 cut(s) 726
BpiI GAAGAC 3 cut(s) 34, 81, 163
Bpu1102I GCTNAGC 1 cut(s) 1607
Bpu14I TTCGAA 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 1399
Bsa29I ATCGAT 3 cut(s) 630, 677, 1534
BsaBI GATNNNNATC 1 cut(s) 1110
BsaHI GRCGYC 2 cut(s) 732, 1277
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 520, 546
BsaWI WCCGGW 4 cut(s) 669, 707, 864, 895
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 1175, 1244
Bse118I RCCGGY 1 cut(s) 895
Bse8I GATNNNNATC 1 cut(s) 1110
BseCI ATCGAT 3 cut(s) 630, 677, 1534
BseDI CCNNGG 2 cut(s) 520, 546
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 1110
BseLI CCNNNNNNNGG 3 cut(s) 551, 1175, 1244
BseMII CTCAG 2 cut(s) 1094, 1197
BseRI GAGGAG 3 cut(s) 187, 264, 729
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 1210
Bsh1236I CGCG 1 cut(s) 1274
Bsh1285I CGRYCG 2 cut(s) 865, 1108
BshFI GGCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 895
BshVI ATCGAT 3 cut(s) 630, 677, 1534
BsiEI CGRYCG 2 cut(s) 865, 1108
BsiSI CCGG 7 cut(s) 468, 534, 670, 708, 865, 896, 1398
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 3 cut(s) 551, 1175, 1244
BsmAI GTCTC 3 cut(s) 28, 374, 433
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 1607
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 9 cut(s) 75, 300, 465, 531, 573, 818, 1256, 1286, 1556
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 1093, 1198
BspDI ATCGAT 3 cut(s) 630, 677, 1534
BspFNI CGCG 1 cut(s) 1274
BspHI TCATGA 1 cut(s) 1392
BspMI ACCTGC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 4 cut(s) 467, 696, 1082, 1556
BspT104I TTCGAA 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 818
BsrFI RCCGGY 1 cut(s) 895
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 520, 546
BssNAI GTATAC 1 cut(s) 1595
BssNI GRCGYC 2 cut(s) 732, 1277
BssT1I CCWWGG 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 1595
BstACI GRCGYC 2 cut(s) 732, 1277
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 724, 1298
BstDEI CTNAG 3 cut(s) 1080, 1206, 1607
BstDSI CCRYGG 2 cut(s) 520, 546
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 1274
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstMAI GTCTC 3 cut(s) 28, 374, 433
BstMCI CGRYCG 2 cut(s) 865, 1108
BstMWI GCNNNNNNNGC 1 cut(s) 1285
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 1397
BstUI CGCG 1 cut(s) 1274
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 3 cut(s) 34, 81, 163
BstX2I RGATCY 2 cut(s) 459, 688
BstYI RGATCY 2 cut(s) 459, 688
BstZ17I GTATAC 1 cut(s) 1595
Bsu15I ATCGAT 3 cut(s) 630, 677, 1534
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 3 cut(s) 630, 677, 1534
BtgI CCRYGG 2 cut(s) 520, 546
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 724, 1298
CaiI CAGNNNCTG 2 cut(s) 776, 1559
CciI TCATGA 1 cut(s) 1392
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 1 cut(s) 851
ClaI ATCGAT 3 cut(s) 630, 677, 1534
CseI GACGC 2 cut(s) 721, 1285
Csp6I GTAC 2 cut(s) 1315, 1473
CspAI ACCGGT 1 cut(s) 895
CviAII CATG 5 cut(s) 356, 409, 521, 1393, 1469
CviQI GTAC 2 cut(s) 1315, 1473
DdeI CTNAG 3 cut(s) 1080, 1206, 1607
DraI TTTAAA 2 cut(s) 324, 1008
EaeI YGGCCR 1 cut(s) 352
EciI GGCGGA 2 cut(s) 454, 1271
Eco130I CCWWGG 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 374
Eco32I GATATC 2 cut(s) 286, 439
Eco47I GGWCC 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 1561
EcoRV GATATC 2 cut(s) 286, 439
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 5 cut(s) 359, 412, 524, 1396, 1472
FalI AAGNNNNNCTT 2 cut(s) 1346, 1378
FaqI GGGAC 1 cut(s) 528
FatI CATG 5 cut(s) 355, 408, 520, 1392, 1468
FauI CCCGC 1 cut(s) 538
FbaI TGATCA 1 cut(s) 1465
FblI GTMKAC 1 cut(s) 1594
Fnu4HI GCNGC 3 cut(s) 78, 300, 1557
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 78, 300, 1557
FspBI CTAG 3 cut(s) 723, 1170, 1419
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 78, 300, 1557
GsaI CCCAGC 1 cut(s) 1214
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 1 cut(s) 354
HapII CCGG 7 cut(s) 468, 534, 670, 708, 865, 896, 1398
HgaI GACGC 2 cut(s) 721, 1285
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 2 cut(s) 732, 1277
Hin1II CATG 5 cut(s) 359, 412, 524, 1396, 1472
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 3 cut(s) 652, 1072, 1270
HindII GTYRAC 3 cut(s) 652, 1072, 1270
HindIII AAGCTT 1 cut(s) 1298
HpaI GTTAAC 3 cut(s) 652, 1072, 1270
HpaII CCGG 7 cut(s) 468, 534, 670, 708, 865, 896, 1398
HphI GGTGA 5 cut(s) 151, 494, 695, 910, 1333
Hpy166II GTNNAC 6 cut(s) 563, 652, 832, 1072, 1270, 1595
Hpy8I GTNNAC 6 cut(s) 563, 652, 832, 1072, 1270, 1595
Hpy99I CGWCG 2 cut(s) 737, 1279
HpyAV CCTTC 9 cut(s) 198, 215, 341, 359, 904, 1006, 1348, 1484, 1500
HpyCH4IV ACGT 3 cut(s) 291, 1152, 1377
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 1285
HpyF3I CTNAG 3 cut(s) 1080, 1206, 1607
HpySE526I ACGT 3 cut(s) 291, 1152, 1377
Hsp92I GRCGYC 2 cut(s) 732, 1277
Hsp92II CATG 5 cut(s) 359, 412, 524, 1396, 1472
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 1465
KspAI GTTAAC 3 cut(s) 652, 1072, 1270
LmnI GCTCC 3 cut(s) 284, 470, 815
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 622
MaeI CTAG 3 cut(s) 723, 1170, 1419
MaeII ACGT 3 cut(s) 291, 1152, 1377
MaeIII GTNAC 8 cut(s) 268, 304, 581, 743, 778, 898, 1261, 1321
MbiI CCGCTC 1 cut(s) 818
MboII GAAGA 9 cut(s) 34, 37, 58, 81, 163, 649, 919, 1210, 1567
MflI RGATCY 2 cut(s) 459, 688
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 9 cut(s) 325, 498, 602, 660, 998, 1126, 1435, 1525, 1570
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 1193
MmeI TCCRAC 1 cut(s) 153
Mox20I TGGCCA 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 1358
MscI TGGCCA 1 cut(s) 354
MseI TTAA 8 cut(s) 323, 651, 1007, 1071, 1233, 1269, 1305, 1548
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 1556
MspI CCGG 7 cut(s) 468, 534, 670, 708, 865, 896, 1398
MspR9I CCNGG 1 cut(s) 1399
MvnI CGCG 1 cut(s) 1274
MwoI GCNNNNNNNGC 1 cut(s) 1285
NciI CCSGG 1 cut(s) 1399
NcoI CCATGG 1 cut(s) 520
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 5 cut(s) 359, 412, 524, 1396, 1472
NmuCI GTSAC 4 cut(s) 268, 304, 898, 1321
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 220
PagI TCATGA 1 cut(s) 1392
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 1271
PdmI GAANNNNTTC 1 cut(s) 1358
PflFI GACNNNGTC 1 cut(s) 167
PinAI ACCGGT 1 cut(s) 895
PkrI GCNGC 3 cut(s) 79, 301, 1558
Ple19I CGATCG 1 cut(s) 1108
PleI GAGTC 1 cut(s) 1192
PpsI GAGTC 1 cut(s) 1192
PscI ACATGT 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 1377
PspFI CCCAGC 1 cut(s) 1210
PspPI GGNCC 1 cut(s) 851
PsrI GAACNNNNNNTAC 2 cut(s) 1578, 1610
PstNI CAGNNNCTG 2 cut(s) 776, 1559
PsuI RGATCY 2 cut(s) 459, 688
PsyI GACNNNGTC 1 cut(s) 167
PvuI CGATCG 1 cut(s) 1108
RsaI GTAC 2 cut(s) 1316, 1474
RsaNI GTAC 2 cut(s) 1315, 1473
SaqAI TTAA 8 cut(s) 323, 651, 1007, 1071, 1233, 1269, 1305, 1548
SatI GCNGC 3 cut(s) 78, 300, 1557
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 1 cut(s) 1193
ScrFI CCNGG 1 cut(s) 1399
SfaNI GCATC 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 220
SinI GGWCC 1 cut(s) 851
Sse9I AATT 9 cut(s) 325, 498, 602, 660, 998, 1126, 1435, 1525, 1570
SsiI CCGC 9 cut(s) 75, 300, 465, 531, 573, 818, 1256, 1286, 1556
SspMI CTAG 3 cut(s) 723, 1170, 1419
StyD4I CCNGG 1 cut(s) 1397
StyI CCWWGG 1 cut(s) 520
TaiI ACGT 3 cut(s) 294, 1155, 1380
TaqI TCGA 9 cut(s) 220, 405, 413, 630, 677, 1104, 1344, 1449, 1534
TasI AATT 9 cut(s) 325, 498, 602, 660, 998, 1126, 1435, 1525, 1570
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 2 cut(s) 302, 1559
Tru1I TTAA 8 cut(s) 323, 651, 1007, 1071, 1233, 1269, 1305, 1548
Tru9I TTAA 8 cut(s) 323, 651, 1007, 1071, 1233, 1269, 1305, 1548
TseFI GTSAC 4 cut(s) 268, 304, 898, 1321
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 4 cut(s) 268, 304, 898, 1321
TspDTI ATGAA 3 cut(s) 231, 1381, 1599
TspGWI ACGGA 5 cut(s) 75, 190, 410, 835, 1227
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 851
XapI RAATTY 5 cut(s) 325, 498, 602, 660, 1126
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 1594
XmnI GAANNNNTTC 1 cut(s) 1358
XspI CTAG 3 cut(s) 723, 1170, 1419
ZrmI AGTACT 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.