Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Forward (+)

81881336 .. 81885665

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGTTCCGACACCAAACCCAAAAGATGACACAATCTAATTATACTACATTTCTCTCCTCTGTTCTTGTCCTCTTTCTCCTTCTTCACTTCTCTGCTACCTCCGCTTCTGTCTATGACGACTTCGTTCAATGCCTCAACACCCACCCAAACTCCTCAGCCACCAAGATAGTCATCCCCCAAAACAACCCTTCTTTCACTTCAACTCTCAGAGCCTACATCCGCAACGCTCGCTTCAACACCTCCACGACTCCCAAACCAGTCCTCATCCTCACGCCGACGACCGAGTCCCACGTCCAGGCCTCCGTCCTCTGCGCCGTTCAACTCAAACTCCAACTGAAAATCCGAAGCGGCGGACACGACTACGAGGGCATCTCATATGTCTCGTCCGAACCGACTTTCGTAGTCCTCGACCTGTTCAACCTCCGGTCAATCGACGTCAACGCCGAGGACGCCACCGCGTGGGCCCAGGCCGGCGCGACTCTCGGAGAGTTGTACTACCGAATCTCCGAGAAGAGTAAAACGCTCGGGTATGCCGCTGGGATTTGCCCCACTGTCGGTGTTGGTGGACACATCAGCGGCGGCGGTTACGGAAACTTGTTGAGGAAGTACGGCCTCGCCGTCGATAATGTATTGGATGCATTGATTGTTGATGTGAACGGCAAGCTTCTGGATAGAAAGGCAATGGGGGAGGATCTGTTTTGGGCTATCAGAGGAGGCGGTGGAGGAAGCTTTGGAGTGATCATATCCTATAAATTGAAGTTGGTTCCGGTGCCGGAAACGGTTACGGTTTTCCGGGTGATGAGTTACACAGAAGGTAATGCAACCGACGTCGTTTTGAGGTGGCAGGAGGTGGCGCCGACCACGGTGGATGATTTGTGGATGAGGATGTTGTTGCAGCCGGTGACTTCTCCGACCAACAAGGGGAAGAAGACTGTTAGGATTTCGATTCTGGCAGAGTATTTAGGCAATGCTAATCAGTTAGTTTCTATTTTGGGTAAGGAGTTTCCTGAATTGGGTTTGAAGAAGGAGGACTGTTTGGAAATGAGTTGGATTGAGTCTGTGCTTTGGTGGAACGATGGTTCAACTCCCAATGTGACCAAACCAGAGGTTTTGCTTGATCGAAATCTCGACCAGGCGAGTTTCGGGAAGAGGAAGTCAGATTACGTGCAGACCCCGATTTCGAGAGAAGGATTGGAGTCATTGTGGAAGAAGATGATTGAAGGCAAGACTGGTTTGGTGTTCAATCCATATGGTGGGAAAATGGCTCAAATTTCGGCCTCCGATGCGCCTTTTCCTCACCGGGCCGGGAATTTGTTTAAGATTCAGTACTCGGTGAATTGGGACGTTGCAGGAGAGGAAGCAACTAATGAGTATTTGAACCAAAGTAGGGTGCTTTACAGTTTTATGACCCCATTTGTGTCCAAGAATCCAAGGAGTGCTTTCTTGAACTATAGGGACCTTGACATTGGTGTCAACAATTTTGGGAAGAATAGCTTTGAACAAGGGAAGGTGTATGGATTGATGTACTTCAACGACAATTTCGATAGGTTGGTGAAGGTGAAGACTGCTGTTGATCCAGGAAATTTCTTCAGGAATGAGCAGAGTATCCCACCTCTTCCAAAAGCTGTCATTACTCCGGTTCATGATTCTCATGTTCAGAAGCGGGGGCATGACTACGAGGGCCTATCTTATGTATCTGATGATCCTTTCATCATTATTGATCTTGCCAACCTTCGTTCGATCCATATTGACATAGAAACTCAGTGTGCTTGGGTCGAGTCAGGTGCTACTCTTGGAGAAGTGTATTACAAAATTGCAGAAAAAAGCAAGGTCTATGGATTTCCAGCAGGGTCTTGTACCACTGTTGGTGTGGGGGCATATATTAGTGGAGGTGGATTTGGTAATTCAGGAAATATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

640

Amino Acids

70.6

Weight (kDa)

6.84

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	88 - 223	2.6e-25	FAD binding domain
BBE	PF08031	480 - 537	2.3e-17	Berberine and berberine like
FAD_binding_4	PF01565	555 - 637	8.3e-11	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	283, 1469
AatII	GACGTC	2 cut(s)	438, 831
AccB1I	GGYRCC	2 cut(s)	769, 853
AccB7I	CCANNNNNTGG	2 cut(s)	459, 1253
AccII	CGCG	2 cut(s)	458, 476
AclWI	GGATC	4 cut(s)	699, 1568, 1697, 1735
AcsI	RAATTY	3 cut(s)	1269, 1309, 1582
AcuI	CTGAAG	1 cut(s)	1573
AcyI	GRCGYC	4 cut(s)	435, 450, 828, 854
AdeI	CACNNNGTG	1 cut(s)	459
AfaI	GTAC	5 cut(s)	494, 608, 1328, 1526, 1858
AfiI	CCNNNNNNNGG	7 cut(s)	295, 459, 554, 921, 1013, 1253, 1387
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	4 cut(s)	294, 465, 1131, 1576
AloI	GAACNNNNNNTCC	2 cut(s)	1063, 1095
AluBI	AGCT	4 cut(s)	664, 729, 1494, 1625
AluI	AGCT	4 cut(s)	664, 729, 1494, 1625
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	4 cut(s)	699, 1568, 1697, 1735
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	7 cut(s)	297, 462, 468, 610, 1275, 1302, 1681
ApaI	GGGCCC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	895
ApoI	RAATTY	3 cut(s)	1269, 1309, 1582
ArsI	GACNNNNNNTTYG	2 cut(s)	1162, 1194
AspLEI	GCGC	4 cut(s)	314, 476, 856, 1288
AspS9I	GGNCC	5 cut(s)	462, 463, 1302, 1456, 1681
AsuC2I	CCSGG	3 cut(s)	794, 1301, 1306
AsuHPI	GGTGA	6 cut(s)	808, 913, 1289, 1345, 1564, 1570
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	1456
BaeGI	GKGCMC	1 cut(s)	466
BanI	GGYRCC	2 cut(s)	769, 853
BanII	GRGCYC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	1145, 1177
BbsI	GAAGAC	2 cut(s)	935, 1568
BbvCI	CCTCAGC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	907
BccI	CCATC	1 cut(s)	1070
BceAI	ACGGC	4 cut(s)	299, 602, 625, 673
BcgI	CGANNNNNNTGC	2 cut(s)	1766, 1800
BciT130I	CCWGG	4 cut(s)	296, 467, 1133, 1578
BciVI	GTATCC	1 cut(s)	1616
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	3 cut(s)	794, 1301, 1306
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	1921
BfmI	CTRYAG	1 cut(s)	1450
BfoI	RGCGCY	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	1616
BisI	GCNGC	5 cut(s)	349, 534, 577, 580, 896
BlsI	GCNGC	5 cut(s)	350, 535, 578, 581, 897
BmcAI	AGTACT	1 cut(s)	1328
Bme1390I	CCNGG	7 cut(s)	296, 467, 794, 1133, 1301, 1306, 1578
Bme18I	GGWCC	1 cut(s)	1456
BmeT110I	CYCGRG	1 cut(s)	524
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	5 cut(s)	462, 463, 1302, 1456, 1681
BmiI	GGNNCC	5 cut(s)	464, 765, 771, 855, 1457
BmrFI	CCNGG	7 cut(s)	296, 467, 794, 1133, 1301, 1306, 1578
BmsI	GCATC	3 cut(s)	378, 625, 1273
BpiI	GAAGAC	2 cut(s)	935, 1568
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	1 cut(s)	154
BpuMI	CCSGG	3 cut(s)	794, 1301, 1306
BsaAI	YACGTR	1 cut(s)	1165
BsaBI	GATNNNNATC	2 cut(s)	170, 1122
BsaHI	GRCGYC	4 cut(s)	435, 450, 828, 854
BsaJI	CCNNGG	4 cut(s)	444, 465, 861, 1430
BsaWI	WCCGGW	3 cut(s)	423, 766, 1636
Bsc4I	CCNNNNNNNGG	7 cut(s)	295, 459, 554, 921, 1013, 1253, 1387
Bse118I	RCCGGY	2 cut(s)	470, 898
Bse1I	ACTGG	2 cut(s)	257, 1234
Bse3DI	GCAATG	2 cut(s)	687, 973
Bse8I	GATNNNNATC	2 cut(s)	170, 1122
BseBI	CCWGG	4 cut(s)	296, 467, 1133, 1578
BseDI	CCNNGG	4 cut(s)	444, 465, 861, 1430
BseGI	GGATG	7 cut(s)	171, 216, 264, 640, 874, 885, 891
BseJI	GATNNNNATC	2 cut(s)	170, 1122
BseLI	CCNNNNNNNGG	7 cut(s)	295, 459, 554, 921, 1013, 1253, 1387
BseMI	GCAATG	2 cut(s)	687, 973
BseMII	CTCAG	3 cut(s)	168, 220, 1775
BseNI	ACTGG	2 cut(s)	257, 1234
BseRI	GAGGAG	3 cut(s)	46, 142, 726
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	907
BseYI	CCCAGC	1 cut(s)	536
BsgI	GTGCAG	1 cut(s)	1187
Bsh1236I	CGCG	2 cut(s)	458, 476
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	7 cut(s)	299, 464, 470, 612, 1277, 1304, 1683
BshNI	GGYRCC	2 cut(s)	769, 853
BsiEI	CGRYCG	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	9 cut(s)	424, 471, 767, 773, 793, 899, 1300, 1305, 1637
BslFI	GGGAC	3 cut(s)	271, 1355, 1469
BslI	CCNNNNNNNGG	7 cut(s)	295, 459, 554, 921, 1013, 1253, 1387
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	3 cut(s)	271, 1355, 1469
BsnI	GGCC	7 cut(s)	299, 464, 470, 612, 1277, 1304, 1683
BsoBI	CYCGRG	1 cut(s)	524
Bsp120I	GGGCCC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
BspANI	GGCC	7 cut(s)	299, 464, 470, 612, 1277, 1304, 1683
BspCNI	CTCAG	3 cut(s)	167, 219, 1774
BspFNI	CGCG	2 cut(s)	458, 476
BspHI	TCATGA	1 cut(s)	1642
BspLI	GGNNCC	5 cut(s)	464, 765, 771, 855, 1457
BspPI	GGATC	4 cut(s)	699, 1568, 1697, 1735
BspT107I	GGYRCC	2 cut(s)	769, 853
BsrDI	GCAATG	2 cut(s)	687, 973
BsrFI	RCCGGY	2 cut(s)	470, 898
BsrI	ACTGG	2 cut(s)	257, 1234
BssAI	RCCGGY	2 cut(s)	470, 898
BssECI	CCNNGG	4 cut(s)	444, 465, 861, 1430
BssMI	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
BssNI	GRCGYC	4 cut(s)	435, 450, 828, 854
BssT1I	CCWWGG	1 cut(s)	1430
Bst2UI	CCWGG	4 cut(s)	296, 467, 1133, 1578
Bst4CI	ACNGT	8 cut(s)	553, 781, 787, 865, 934, 1034, 1400, 1864
Bst6I	CTCTTC	3 cut(s)	506, 1142, 1620
BstACI	GRCGYC	4 cut(s)	435, 450, 828, 854
BstBAI	YACGTR	1 cut(s)	1165
BstC8I	GCNNGC	3 cut(s)	229, 472, 662
BstDEI	CTNAG	3 cut(s)	154, 206, 1761
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	7 cut(s)	171, 216, 264, 640, 874, 885, 891
BstFNI	CGCG	2 cut(s)	458, 476
BstH2I	RGCGCY	1 cut(s)	857
BstHHI	GCGC	4 cut(s)	314, 476, 856, 1288
BstKTI	GATC	7 cut(s)	694, 741, 1120, 1576, 1705, 1723, 1743
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 228, 449, 1283
BstNI	CCWGG	4 cut(s)	296, 467, 1133, 1578
BstSCI	CCNGG	7 cut(s)	294, 465, 792, 1131, 1299, 1304, 1576
BstSFI	CTRYAG	1 cut(s)	1450
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	2 cut(s)	458, 476
BstV1I	GCAGC	1 cut(s)	907
BstV2I	GAAGAC	2 cut(s)	935, 1568
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	1616
BsuRI	GGCC	7 cut(s)	299, 464, 470, 612, 1277, 1304, 1683
BtgI	CCRYGG	1 cut(s)	861
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	7 cut(s)	171, 216, 264, 640, 874, 885, 891
BtsIMutI	CAGTG	3 cut(s)	549, 1769, 1860
Cac8I	GCNNGC	3 cut(s)	229, 472, 662
CciI	TCATGA	1 cut(s)	1642
CfoI	GCGC	4 cut(s)	314, 476, 856, 1288
Cfr10I	RCCGGY	2 cut(s)	470, 898
Cfr13I	GGNCC	5 cut(s)	462, 463, 1302, 1456, 1681
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	5 cut(s)	493, 607, 1327, 1525, 1857
CviAII	CATG	3 cut(s)	1643, 1652, 1670
CviQI	GTAC	5 cut(s)	493, 607, 1327, 1525, 1857
DdeI	CTNAG	3 cut(s)	154, 206, 1761
DinI	GGCGCC	1 cut(s)	855
DpnI	GATC	7 cut(s)	693, 740, 1119, 1575, 1704, 1722, 1742
DpnII	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
DraIII	CACNNNGTG	1 cut(s)	459
DrdI	GACNNNNNNGTC	2 cut(s)	283, 1469
DseDI	GACNNNNNNGTC	2 cut(s)	283, 1469
Eam1104I	CTCTTC	3 cut(s)	506, 1142, 1620
EarI	CTCTTC	3 cut(s)	506, 1142, 1620
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	1430
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	1456
Eco57I	CTGAAG	1 cut(s)	1573
Eco88I	CYCGRG	1 cut(s)	524
EcoO109I	RGGNCCY	2 cut(s)	1456, 1681
EcoRII	CCWGG	4 cut(s)	294, 465, 1131, 1576
EcoT14I	CCWWGG	1 cut(s)	1430
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	466
EgeI	GGCGCC	1 cut(s)	855
EheI	GGCGCC	1 cut(s)	855
ErhI	CCWWGG	1 cut(s)	1430
FaeI	CATG	3 cut(s)	1646, 1655, 1673
FalI	AAGNNNNNCTT	4 cut(s)	1423, 1455, 1478, 1510
FaqI	GGGAC	3 cut(s)	271, 1355, 1469
FatI	CATG	3 cut(s)	1642, 1651, 1669
FauI	CCCGC	1 cut(s)	1656
FauNDI	CATATG	2 cut(s)	376, 1249
FbaI	TGATCA	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	349, 534, 577, 580, 896
FokI	GGATG	7 cut(s)	158, 203, 251, 647, 881, 892, 898
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	5 cut(s)	349, 534, 577, 580, 896
FspBI	CTAG	1 cut(s)	1921
GlaI	GCGC	4 cut(s)	313, 475, 855, 1287
GluI	GCNGC	5 cut(s)	349, 534, 577, 580, 896
GsaI	CCCAGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	857
HaeIII	GGCC	7 cut(s)	299, 464, 470, 612, 1277, 1304, 1683
HapII	CCGG	9 cut(s)	424, 471, 767, 773, 793, 899, 1300, 1305, 1637
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	4 cut(s)	314, 476, 856, 1288
Hin1I	GRCGYC	4 cut(s)	435, 450, 828, 854
Hin1II	CATG	3 cut(s)	1646, 1655, 1673
Hin6I	GCGC	4 cut(s)	312, 474, 854, 1286
HinP1I	GCGC	4 cut(s)	312, 474, 854, 1286
HincII	GTYRAC	2 cut(s)	439, 1474
HindII	GTYRAC	2 cut(s)	439, 1474
HindIII	AAGCTT	2 cut(s)	662, 727
HpaII	CCGG	9 cut(s)	424, 471, 767, 773, 793, 899, 1300, 1305, 1637
HphI	GGTGA	6 cut(s)	808, 913, 1289, 1345, 1564, 1570
Hpy166II	GTNNAC	4 cut(s)	439, 566, 655, 1474
Hpy188III	TCNNGA	9 cut(s)	668, 1007, 1127, 1144, 1182, 1444, 1591, 1643, 1908
Hpy8I	GTNNAC	4 cut(s)	439, 566, 655, 1474
Hpy99I	CGWCG	5 cut(s)	280, 437, 623, 830, 833
HpyAV	CCTTC	9 cut(s)	89, 198, 806, 1018, 1181, 1214, 1501, 1549, 1742
HpyCH4III	ACNGT	8 cut(s)	553, 781, 787, 865, 934, 1034, 1400, 1864
HpyCH4IV	ACGT	5 cut(s)	291, 435, 828, 1164, 1344
HpyCH4V	TGCA	6 cut(s)	638, 821, 895, 1168, 1349, 1817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 228, 449, 1283
HpyF3I	CTNAG	3 cut(s)	154, 206, 1761
HpySE526I	ACGT	5 cut(s)	291, 435, 828, 1164, 1344
Hsp92I	GRCGYC	4 cut(s)	435, 450, 828, 854
Hsp92II	CATG	3 cut(s)	1646, 1655, 1673
HspAI	GCGC	4 cut(s)	312, 474, 854, 1286
KasI	GGCGCC	1 cut(s)	853
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
Lsp1109I	GCAGC	1 cut(s)	907
LweI	GCATC	3 cut(s)	378, 625, 1273
MaeI	CTAG	1 cut(s)	1921
MaeII	ACGT	5 cut(s)	291, 435, 828, 1164, 1344
MaeIII	GTNAC	5 cut(s)	584, 781, 803, 901, 1093
MalI	GATC	7 cut(s)	693, 740, 1119, 1575, 1704, 1722, 1742
MboI	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	1 cut(s)	466
Mly113I	GGCGCC	1 cut(s)	854
MlyI	GAGTC	6 cut(s)	241, 293, 472, 1064, 1205, 1787
MmeI	TCCRAC	4 cut(s)	31, 355, 935, 1028
Mph1103I	ATGCAT	1 cut(s)	640
MroNI	GCCGGC	1 cut(s)	470
MseI	TTAA	1 cut(s)	1317
MspA1I	CMGCKG	2 cut(s)	536, 576
MspI	CCGG	9 cut(s)	424, 471, 767, 773, 793, 899, 1300, 1305, 1637
MspR9I	CCNGG	7 cut(s)	296, 467, 794, 1133, 1301, 1306, 1578
MvaI	CCWGG	4 cut(s)	296, 467, 1133, 1578
MvnI	CGCG	2 cut(s)	458, 476
MwoI	GCNNNNNNNGC	4 cut(s)	101, 228, 449, 1283
NaeI	GCCGGC	1 cut(s)	472
NarI	GGCGCC	1 cut(s)	854
NciI	CCSGG	3 cut(s)	794, 1301, 1306
NdeI	CATATG	2 cut(s)	376, 1249
NdeII	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	3 cut(s)	1646, 1655, 1673
NlaIV	GGNNCC	5 cut(s)	464, 765, 771, 855, 1457
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	901, 1093
NsiI	ATGCAT	1 cut(s)	640
PagI	TCATGA	1 cut(s)	1642
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	5 cut(s)	389, 405, 441, 615, 1539
PdiI	GCCGGC	1 cut(s)	472
PfeI	GAWTC	5 cut(s)	501, 946, 1321, 1426, 1646
PflFI	GACNNNGTC	1 cut(s)	283
PflMI	CCANNNNNTGG	2 cut(s)	459, 1253
PfoI	TCCNGGA	1 cut(s)	1576
PkrI	GCNGC	5 cut(s)	350, 535, 578, 581, 897
PleI	GAGTC	6 cut(s)	241, 292, 472, 1063, 1204, 1786
PluTI	GGCGCC	1 cut(s)	857
PpsI	GAGTC	6 cut(s)	241, 292, 472, 1063, 1204, 1786
Ppu21I	YACGTR	1 cut(s)	1165
PpuMI	RGGWCCY	1 cut(s)	1456
Psp5II	RGGWCCY	1 cut(s)	1456
Psp6I	CCWGG	4 cut(s)	294, 465, 1131, 1576
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	4 cut(s)	294, 465, 1131, 1576
PspN4I	GGNNCC	5 cut(s)	464, 765, 771, 855, 1457
PspOMI	GGGCCC	1 cut(s)	462
PspPI	GGNCC	5 cut(s)	462, 463, 1302, 1456, 1681
PspPPI	RGGWCCY	1 cut(s)	1456
PsuI	RGATCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	283
RsaI	GTAC	5 cut(s)	494, 608, 1328, 1526, 1858
RsaNI	GTAC	5 cut(s)	493, 607, 1327, 1525, 1857
SaqAI	TTAA	1 cut(s)	1317
SatI	GCNGC	5 cut(s)	349, 534, 577, 580, 896
Sau3AI	GATC	7 cut(s)	691, 738, 1117, 1573, 1702, 1720, 1740
Sau96I	GGNCC	5 cut(s)	462, 463, 1302, 1456, 1681
ScaI	AGTACT	1 cut(s)	1328
SchI	GAGTC	6 cut(s)	241, 293, 472, 1064, 1205, 1787
ScrFI	CCNGG	7 cut(s)	296, 467, 794, 1133, 1301, 1306, 1578
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	3 cut(s)	378, 625, 1273
SfcI	CTRYAG	1 cut(s)	1450
SfoI	GGCGCC	1 cut(s)	855
SinI	GGWCC	1 cut(s)	1456
SseBI	AGGCCT	1 cut(s)	299
SspDI	GGCGCC	1 cut(s)	853
SspMI	CTAG	1 cut(s)	1921
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	7 cut(s)	294, 465, 792, 1131, 1299, 1304, 1576
StyI	CCWWGG	1 cut(s)	1430
TaaI	ACNGT	8 cut(s)	553, 781, 787, 865, 934, 1034, 1400, 1864
TaiI	ACGT	5 cut(s)	294, 438, 831, 1167, 1347
TaqII	GACCGA	1 cut(s)	296
TatI	WGTACW	3 cut(s)	492, 1326, 1524
TauI	GCSGC	4 cut(s)	351, 536, 579, 582
TfiI	GAWTC	5 cut(s)	501, 946, 1321, 1426, 1646
Tru1I	TTAA	1 cut(s)	1317
Tru9I	TTAA	1 cut(s)	1317
TscAI	CASTG	3 cut(s)	556, 1769, 1867
TseFI	GTSAC	2 cut(s)	901, 1093
TseI	GCWGC	1 cut(s)	895
Tsp45I	GTSAC	2 cut(s)	901, 1093
TspDTI	ATGAA	2 cut(s)	1631, 1699
TspGWI	ACGGA	2 cut(s)	292, 603
TspRI	CASTG	3 cut(s)	556, 1769, 1867
Tth111I	GACNNNGTC	1 cut(s)	283
Van91I	CCANNNNNTGG	2 cut(s)	459, 1253
VpaK11BI	GGWCC	1 cut(s)	1456
XapI	RAATTY	3 cut(s)	1269, 1309, 1582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1867
XspI	CTAG	1 cut(s)	1921
ZraI	GACGTC	2 cut(s)	436, 829
ZrmI	AGTACT	1 cut(s)	1328
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.