Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003415.1

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Forward (+)

22264 .. 27624

Gene Structure 5361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003415.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

atgttccaacaccaaaccccacaactgttccaacgccaaactcaaaagatgatacaatctaatcatactacatttctctcctctgttcttctcctctttctccttcttcacgtctctgcaacctccgcttcagtctatgacgacttcgttcaatgcctcaacacccacccaaactcctcagcctccgaaatagtcatcccccaaaacaacccttctttcgcttcaactctcagagcctacatccgcaacgctcgcttcaacacctccacgactcccaaaccagtcctcatcctcacgccgacgaccgagtcccacgtccaggcctccgtcctctgcgccgttcaactcaaactccaactcaaaatccgaagcggcggacacgactacgagggcatctcatatgtctcgtccgaaccgactttcgtaatcctcgacctgttcaacctccggtcaatcgacgtcaacgccgaggacgccaccgcgtgggcccaggccggcgcgactctcggagagttgtactaccgaatctccgagaagagtaaaacgctcgggtatgccgctgggatttgccccactgtcggtgttggtggacacatcagcggcggcggttacggaaacttgttgaggaagtacggcctcgccgtcgataatgtattggatgcattgattgttgatgtgaacgggaagcttctggatagaaaggcaatgggggaggatctgttttgggctatcagaggcggcggtggaggaagctttggagtgatcatttcttataaattgaagttggttccggtgccggaaactgttacggttttccgggtgatgagttacacagaaggtaatgcaaccgacgtcgttttgaggtggcaggaggtggcgccgaccacggtggatgatttgtggatgaggatgttgttgcagccggtgacatctccgacaaaaaagggtgagaagactgttaggatttcgattctggcccagtatttaggcaatgctaatcagttggtttctattttgggtaaggagtttcctgaattgggtttgaagaaggaggactgtttggaaatgagttggattgagtctgtgctttggtggaacgatggttcaactcccaatgtgaccaaaccagaggttttacttgatcgaaatctcgaccaggctagtttcgggaagaggaagtcagattacgtgcagaccccgatttcgagagaagggttggagtcattgtggaagaagatgattgaaggcaagactggtttggtgttcaatccatatggtgggaaaatggctcagatttcggcgtctgatgcgccttttcctcaccgggccgggaatttgtttaagattcagtactcggtgaattgggacgttgcaggagaggaagcaactaatgagtatttgaaccaaagtagggtgctttacagttttatgaccccatttgtgtccaagaatccaaggagtgctttcttgaactatagggaccttgacattggtgtcaacaattttgggaagaatagctttgaacaagggaaggtgtatggattgatgtacttcaacgacaatttcgataggttggtgaaggtgaagactgctgttgatccaggaaatttcttcaggaatgagcagagtatcccaccttttccaagacgttttggactcttcaaggaaaagaaagaaaaaaattttgaaacgaagaacccagaagcatcgagtctcgacccgtttctaggaaccttgaagagcacggcccgacccggaaatttctccctcgttcggcagcttctgggtgttgtcccggcagaaactggtgttgcagataaagctggcacaactggcggcaaaactatctcagtttcatttgatgcattgttccttggaccagttgagaaacttcttcctttgatgcaagacaatttcccagacttgagattagaccgcagtgattgcaccgaaatgagctggatcgaatctgttatgcactatgctggcttctcaaaagtgaacctctggaagttttgcttaactgggctcaaacgtctaggcacttcttcaaagcaaaatcagactgtgaccaaacccatttcagaagctggcttggaaggtttatggaaaagactacttcaagtagagacatcccagttgatactgtcaccctacggtggaaagatgagtgagatttctgattcagaaactccattcccacatagaagaggaaacatattcaaaatccagtatttggtcacttgggatgatgaaaaggagacaaacatacatattggctggatgaagaagctgtatgcatatatggcaccatatgtttctaagtccccaagagctgcctatttgaactacagggatcttgacttggggaggaacaacaatgatggcaatacaaagctatgcgaaagcaagcatttggggtttgaagtatttcaagagcaatttcaggagacttgttcatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

821

Amino Acids

91.73

Weight (kDa)

8.44

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AasI	GACNNNNNNGTC	2 cut(s)	307, 1493
AatII	GACGTC	2 cut(s)	462, 855
AccB1I	GGYRCC	3 cut(s)	793, 877, 2308
AccB7I	CCANNNNNTGG	3 cut(s)	483, 1277, 2236
AccII	CGCG	2 cut(s)	482, 500
AclWI	GGATC	4 cut(s)	723, 1592, 1970, 2364
AcsI	RAATTY	4 cut(s)	1333, 1606, 1681, 1759
AcuI	CTGAAG	2 cut(s)	114, 1597
AcyI	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
AdeI	CACNNNGTG	1 cut(s)	483
AfaI	GTAC	4 cut(s)	518, 632, 1352, 1550
AjiI	CACGTC	2 cut(s)	112, 316
AjnI	CCWGG	4 cut(s)	318, 489, 1155, 1600
AloI	GAACNNNNNNTCC	2 cut(s)	1087, 1119
Alw21I	GWGCWC	1 cut(s)	1745
Alw26I	GTCTC	6 cut(s)	118, 409, 1718, 2123, 2255, 2444
AlwI	GGATC	4 cut(s)	723, 1592, 1970, 2364
AlwNI	CAGNNNCTG	3 cut(s)	1783, 1805, 2090
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	7 cut(s)	321, 486, 492, 634, 975, 1326, 1746
ApaI	GGGCCC	1 cut(s)	490
ApeKI	GCWGC	3 cut(s)	919, 1777, 2336
ApoI	RAATTY	4 cut(s)	1333, 1606, 1681, 1759
ArsI	GACNNNNNNTTYG	2 cut(s)	1186, 1218
Asp700I	GAANNNNTTC	1 cut(s)	2430
AspLEI	GCGC	4 cut(s)	338, 500, 880, 1312
AspS9I	GGNCC	7 cut(s)	486, 487, 976, 1326, 1480, 1747, 1877
AsuC2I	CCSGG	5 cut(s)	818, 1325, 1330, 1755, 1796
AsuHPI	GGTGA	8 cut(s)	832, 937, 959, 1313, 1369, 1588, 1594, 2142
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	1480, 1877
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	3 cut(s)	793, 877, 2308
BanII	GRGCYC	2 cut(s)	490, 2031
BarI	GAAGNNNNNNTAC	2 cut(s)	1169, 1201
BbsI	GAAGAC	2 cut(s)	959, 1592
Bbv12I	GWGCWC	1 cut(s)	1745
BbvCI	CCTCAGC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	931, 1789, 2323
BccI	CCATC	2 cut(s)	1094, 2378
BceAI	ACGGC	4 cut(s)	323, 626, 649, 1761
BciT130I	CCWGG	4 cut(s)	320, 491, 1157, 1602
BciVI	GTATCC	1 cut(s)	1640
BclI	TGATCA	1 cut(s)	762
BcnI	CCSGG	5 cut(s)	818, 1325, 1330, 1755, 1796
BcoDI	GTCTC	6 cut(s)	118, 409, 1718, 2123, 2255, 2444
BfaI	CTAG	3 cut(s)	1161, 1727, 2039
BfmI	CTRYAG	2 cut(s)	1474, 2350
BfoI	RGCGCY	1 cut(s)	881
BfuI	GTATCC	1 cut(s)	1640
BisI	GCNGC	9 cut(s)	373, 558, 601, 604, 739, 920, 1778, 1837, 2337
BlsI	GCNGC	9 cut(s)	374, 559, 602, 605, 740, 921, 1779, 1838, 2338
BmcAI	AGTACT	1 cut(s)	1352
Bme1390I	CCNGG	9 cut(s)	320, 491, 818, 1157, 1325, 1330, 1602, 1755, 1796
Bme18I	GGWCC	2 cut(s)	1480, 1877
BmeT110I	CYCGRG	1 cut(s)	548
BmgBI	CACGTC	2 cut(s)	112, 316
BmgT120I	GGNCC	7 cut(s)	486, 487, 976, 1326, 1480, 1747, 1877
BmiI	GGNNCC	7 cut(s)	488, 789, 795, 879, 1481, 1732, 2310
BmrFI	CCNGG	9 cut(s)	320, 491, 818, 1157, 1325, 1330, 1602, 1755, 1796
BmrI	ACTGGG	3 cut(s)	973, 2034, 2131
BmsI	GCATC	6 cut(s)	402, 649, 1297, 1715, 1852, 1893
BmuI	ACTGGG	3 cut(s)	973, 2034, 2131
BpiI	GAAGAC	2 cut(s)	959, 1592
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
Bpu10I	CCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	1945
BpuMI	CCSGG	5 cut(s)	818, 1325, 1330, 1755, 1796
BsaAI	YACGTR	1 cut(s)	1189
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaHI	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
BsaJI	CCNNGG	5 cut(s)	468, 489, 885, 1454, 1873
BsaWI	WCCGGW	2 cut(s)	447, 790
Bse118I	RCCGGY	2 cut(s)	494, 922
Bse1I	ACTGG	9 cut(s)	281, 979, 1258, 1810, 1837, 1880, 2029, 2137, 2230
Bse3DI	GCAATG	2 cut(s)	711, 997
Bse8I	GATNNNNATC	1 cut(s)	1146
BseBI	CCWGG	4 cut(s)	320, 491, 1157, 1602
BseDI	CCNNGG	5 cut(s)	468, 489, 885, 1454, 1873
BseJI	GATNNNNATC	1 cut(s)	1146
BseMI	GCAATG	2 cut(s)	711, 997
BseMII	CTCAG	4 cut(s)	192, 244, 1304, 1863
BseNI	ACTGG	9 cut(s)	281, 979, 1258, 1810, 1837, 1880, 2029, 2137, 2230
BseRI	GAGGAG	3 cut(s)	70, 83, 166
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	931, 1789, 2323
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	1211
Bsh1236I	CGCG	2 cut(s)	482, 500
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	7 cut(s)	323, 488, 494, 636, 977, 1328, 1748
BshNI	GGYRCC	3 cut(s)	793, 877, 2308
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	1745
BsiHKCI	CYCGRG	1 cut(s)	548
BslFI	GGGAC	5 cut(s)	295, 1379, 1493, 1778, 2311
BsmAI	GTCTC	6 cut(s)	118, 409, 1718, 2123, 2255, 2444
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	5 cut(s)	295, 1379, 1493, 1778, 2311
BsnI	GGCC	7 cut(s)	323, 488, 494, 636, 977, 1328, 1748
BsoBI	CYCGRG	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	486
Bsp1286I	GDGCHC	3 cut(s)	490, 1745, 2031
Bsp143I	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
BspANI	GGCC	7 cut(s)	323, 488, 494, 636, 977, 1328, 1748
BspCNI	CTCAG	4 cut(s)	191, 243, 1303, 1862
BspFNI	CGCG	2 cut(s)	482, 500
BspLI	GGNNCC	7 cut(s)	488, 789, 795, 879, 1481, 1732, 2310
BspPI	GGATC	4 cut(s)	723, 1592, 1970, 2364
BspQI	GCTCTTC	1 cut(s)	1733
BspT107I	GGYRCC	3 cut(s)	793, 877, 2308
BsrDI	GCAATG	2 cut(s)	711, 997
BsrFI	RCCGGY	2 cut(s)	494, 922
BsrI	ACTGG	9 cut(s)	281, 979, 1258, 1810, 1837, 1880, 2029, 2137, 2230
BssAI	RCCGGY	2 cut(s)	494, 922
BssECI	CCNNGG	5 cut(s)	468, 489, 885, 1454, 1873
BssMI	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
BssNI	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
BssT1I	CCWWGG	2 cut(s)	1454, 1873
Bst2UI	CCWGG	4 cut(s)	320, 491, 1157, 1602
Bst6I	CTCTTC	5 cut(s)	530, 1166, 1664, 1733, 2203
BstACI	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
BstAPI	GCANNNNNTGC	1 cut(s)	1944
BstBAI	YACGTR	1 cut(s)	1189
BstC8I	GCNNGC	6 cut(s)	253, 496, 1825, 1987, 2092, 2411
BstDEI	CTNAG	5 cut(s)	178, 230, 1290, 1849, 2322
BstDSI	CCRYGG	1 cut(s)	885
BstFNI	CGCG	2 cut(s)	482, 500
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	4 cut(s)	338, 500, 880, 1312
BstKTI	GATC	6 cut(s)	718, 765, 1144, 1600, 1965, 2359
BstMAI	GTCTC	6 cut(s)	118, 409, 1718, 2123, 2255, 2444
BstMBI	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 252, 473, 1307, 1820, 1833, 1944, 2306
BstNI	CCWGG	4 cut(s)	320, 491, 1157, 1602
BstSCI	CCNGG	9 cut(s)	318, 489, 816, 1155, 1323, 1328, 1600, 1753, 1794
BstSFI	CTRYAG	2 cut(s)	1474, 2350
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	2 cut(s)	482, 500
BstV1I	GCAGC	3 cut(s)	931, 1789, 2323
BstV2I	GAAGAC	2 cut(s)	959, 1592
BstX2I	RGATCY	2 cut(s)	715, 2356
BstYI	RGATCY	2 cut(s)	715, 2356
BsuI	GTATCC	1 cut(s)	1640
BsuRI	GGCC	7 cut(s)	323, 488, 494, 636, 977, 1328, 1748
BtgI	CCRYGG	1 cut(s)	885
BtrI	CACGTC	2 cut(s)	112, 316
BtsI	GCAGTG	1 cut(s)	1945
BtsIMutI	CAGTG	2 cut(s)	573, 1945
Cac8I	GCNNGC	6 cut(s)	253, 496, 1825, 1987, 2092, 2411
CaiI	CAGNNNCTG	3 cut(s)	1783, 1805, 2090
CfoI	GCGC	4 cut(s)	338, 500, 880, 1312
Cfr10I	RCCGGY	2 cut(s)	494, 922
Cfr13I	GGNCC	7 cut(s)	486, 487, 976, 1326, 1480, 1747, 1877
CseI	GACGC	2 cut(s)	482, 1290
Csp6I	GTAC	4 cut(s)	517, 631, 1351, 1549
CviAII	CATG	1 cut(s)	2460
CviQI	GTAC	4 cut(s)	517, 631, 1351, 1549
DdeI	CTNAG	5 cut(s)	178, 230, 1290, 1849, 2322
DinI	GGCGCC	1 cut(s)	879
DpnI	GATC	6 cut(s)	717, 764, 1143, 1599, 1964, 2358
DpnII	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
DraIII	CACNNNGTG	1 cut(s)	483
DrdI	GACNNNNNNGTC	2 cut(s)	307, 1493
DseDI	GACNNNNNNGTC	2 cut(s)	307, 1493
Eam1104I	CTCTTC	5 cut(s)	530, 1166, 1664, 1733, 2203
EarI	CTCTTC	5 cut(s)	530, 1166, 1664, 1733, 2203
EciI	GGCGGA	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	1454, 1873
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	490, 2031
Eco47I	GGWCC	2 cut(s)	1480, 1877
Eco57I	CTGAAG	2 cut(s)	114, 1597
Eco88I	CYCGRG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	1480
EcoRII	CCWGG	4 cut(s)	318, 489, 1155, 1600
EcoT14I	CCWWGG	2 cut(s)	1454, 1873
EcoT22I	ATGCAT	3 cut(s)	664, 1867, 2302
EcoT38I	GRGCYC	2 cut(s)	490, 2031
EgeI	GGCGCC	1 cut(s)	879
EheI	GGCGCC	1 cut(s)	879
ErhI	CCWWGG	2 cut(s)	1454, 1873
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	1 cut(s)	2463
FalI	AAGNNNNNCTT	6 cut(s)	1447, 1479, 1502, 1534, 2003, 2035
FaqI	GGGAC	5 cut(s)	295, 1379, 1493, 1778, 2311
FatI	CATG	1 cut(s)	2459
FauNDI	CATATG	3 cut(s)	400, 1273, 2314
FbaI	TGATCA	1 cut(s)	762
Fnu4HI	GCNGC	9 cut(s)	373, 558, 601, 604, 739, 920, 1778, 1837, 2337
FriOI	GRGCYC	2 cut(s)	490, 2031
Fsp4HI	GCNGC	9 cut(s)	373, 558, 601, 604, 739, 920, 1778, 1837, 2337
FspBI	CTAG	3 cut(s)	1161, 1727, 2039
GlaI	GCGC	4 cut(s)	337, 499, 879, 1311
GluI	GCNGC	9 cut(s)	373, 558, 601, 604, 739, 920, 1778, 1837, 2337
GsaI	CCCAGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	7 cut(s)	323, 488, 494, 636, 977, 1328, 1748
HgaI	GACGC	2 cut(s)	482, 1290
HhaI	GCGC	4 cut(s)	338, 500, 880, 1312
Hin1I	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
Hin1II	CATG	1 cut(s)	2463
Hin6I	GCGC	4 cut(s)	336, 498, 878, 1310
HinP1I	GCGC	4 cut(s)	336, 498, 878, 1310
HincII	GTYRAC	2 cut(s)	463, 1498
HindII	GTYRAC	2 cut(s)	463, 1498
HindIII	AAGCTT	2 cut(s)	686, 751
HphI	GGTGA	8 cut(s)	832, 937, 959, 1313, 1369, 1588, 1594, 2142
Hpy166II	GTNNAC	5 cut(s)	463, 590, 679, 1498, 2002
Hpy8I	GTNNAC	5 cut(s)	463, 590, 679, 1498, 2002
Hpy99I	CGWCG	5 cut(s)	304, 461, 647, 854, 857
HpyAV	CCTTC	9 cut(s)	113, 222, 830, 1042, 1205, 1238, 1525, 1573, 2093
HpyCH4IV	ACGT	8 cut(s)	111, 315, 459, 852, 1188, 1368, 1648, 2035
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 252, 473, 1307, 1820, 1833, 1944, 2306
HpyF3I	CTNAG	5 cut(s)	178, 230, 1290, 1849, 2322
HpySE526I	ACGT	8 cut(s)	111, 315, 459, 852, 1188, 1368, 1648, 2035
Hsp92I	GRCGYC	5 cut(s)	459, 474, 852, 878, 1301
Hsp92II	CATG	1 cut(s)	2463
HspAI	GCGC	4 cut(s)	336, 498, 878, 1310
KasI	GGCGCC	1 cut(s)	877
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
LguI	GCTCTTC	1 cut(s)	1733
Lsp1109I	GCAGC	3 cut(s)	931, 1789, 2323
LweI	GCATC	6 cut(s)	402, 649, 1297, 1715, 1852, 1893
MaeI	CTAG	3 cut(s)	1161, 1727, 2039
MaeII	ACGT	8 cut(s)	111, 315, 459, 852, 1188, 1368, 1648, 2035
MaeIII	GTNAC	8 cut(s)	608, 805, 827, 925, 1117, 2068, 2148, 2239
MalI	GATC	6 cut(s)	717, 764, 1143, 1599, 1964, 2358
MboI	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
MflI	RGATCY	2 cut(s)	715, 2356
MhlI	GDGCHC	3 cut(s)	490, 1745, 2031
Mly113I	GGCGCC	1 cut(s)	878
MlyI	GAGTC	7 cut(s)	265, 317, 496, 1088, 1229, 1650, 1720
MmeI	TCCRAC	6 cut(s)	31, 55, 379, 959, 1052, 1197
Mph1103I	ATGCAT	3 cut(s)	664, 1867, 2302
MroNI	GCCGGC	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	2430
MseI	TTAA	3 cut(s)	1341, 2021, 2464
MslI	CAYNNNNRTG	1 cut(s)	1952
MspA1I	CMGCKG	2 cut(s)	560, 600
MspR9I	CCNGG	9 cut(s)	320, 491, 818, 1157, 1325, 1330, 1602, 1755, 1796
MvaI	CCWGG	4 cut(s)	320, 491, 1157, 1602
MvnI	CGCG	2 cut(s)	482, 500
MwoI	GCNNNNNNNGC	8 cut(s)	125, 252, 473, 1307, 1820, 1833, 1944, 2306
NaeI	GCCGGC	1 cut(s)	496
NarI	GGCGCC	1 cut(s)	878
NciI	CCSGG	5 cut(s)	818, 1325, 1330, 1755, 1796
NdeI	CATATG	3 cut(s)	400, 1273, 2314
NdeII	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	1 cut(s)	2463
NlaIV	GGNNCC	7 cut(s)	488, 789, 795, 879, 1481, 1732, 2310
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	5 cut(s)	925, 1117, 2068, 2148, 2239
NsiI	ATGCAT	3 cut(s)	664, 1867, 2302
PceI	AGGCCT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	1733
PcsI	WCGNNNNNNNCGW	5 cut(s)	413, 429, 465, 639, 1563
PdiI	GCCGGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	2430
PfeI	GAWTC	6 cut(s)	525, 970, 1345, 1450, 1967, 2183
PflFI	GACNNNGTC	1 cut(s)	307
PflMI	CCANNNNNTGG	3 cut(s)	483, 1277, 2236
PfoI	TCCNGGA	1 cut(s)	1600
PkrI	GCNGC	9 cut(s)	374, 559, 602, 605, 740, 921, 1779, 1838, 2338
PleI	GAGTC	7 cut(s)	265, 316, 496, 1087, 1228, 1650, 1719
PluTI	GGCGCC	1 cut(s)	881
PpsI	GAGTC	7 cut(s)	265, 316, 496, 1087, 1228, 1650, 1719
Ppu21I	YACGTR	1 cut(s)	1189
PpuMI	RGGWCCY	1 cut(s)	1480
PsiI	TTATAA	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	1480
Psp6I	CCWGG	4 cut(s)	318, 489, 1155, 1600
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	4 cut(s)	318, 489, 1155, 1600
PspN4I	GGNNCC	7 cut(s)	488, 789, 795, 879, 1481, 1732, 2310
PspOMI	GGGCCC	1 cut(s)	486
PspPI	GGNCC	7 cut(s)	486, 487, 976, 1326, 1480, 1747, 1877
PspPPI	RGGWCCY	1 cut(s)	1480
PstNI	CAGNNNCTG	3 cut(s)	1783, 1805, 2090
PsuI	RGATCY	2 cut(s)	715, 2356
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	4 cut(s)	518, 632, 1352, 1550
RsaNI	GTAC	4 cut(s)	517, 631, 1351, 1549
RseI	CAYNNNNRTG	1 cut(s)	1952
SapI	GCTCTTC	1 cut(s)	1733
SaqAI	TTAA	3 cut(s)	1341, 2021, 2464
SatI	GCNGC	9 cut(s)	373, 558, 601, 604, 739, 920, 1778, 1837, 2337
Sau3AI	GATC	6 cut(s)	715, 762, 1141, 1597, 1962, 2356
Sau96I	GGNCC	7 cut(s)	486, 487, 976, 1326, 1480, 1747, 1877
ScaI	AGTACT	1 cut(s)	1352
SchI	GAGTC	7 cut(s)	265, 317, 496, 1088, 1229, 1650, 1720
ScrFI	CCNGG	9 cut(s)	320, 491, 818, 1157, 1325, 1330, 1602, 1755, 1796
SduI	GDGCHC	3 cut(s)	490, 1745, 2031
SfaNI	GCATC	6 cut(s)	402, 649, 1297, 1715, 1852, 1893
SfcI	CTRYAG	2 cut(s)	1474, 2350
SfoI	GGCGCC	1 cut(s)	879
SinI	GGWCC	2 cut(s)	1480, 1877
SmiMI	CAYNNNNRTG	1 cut(s)	1952
SmlI	CTYRAG	1 cut(s)	1924
SmoI	CTYRAG	1 cut(s)	1924
SseBI	AGGCCT	1 cut(s)	323
SspDI	GGCGCC	1 cut(s)	877
SspMI	CTAG	3 cut(s)	1161, 1727, 2039
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	9 cut(s)	318, 489, 816, 1155, 1323, 1328, 1600, 1753, 1794
StyI	CCWWGG	2 cut(s)	1454, 1873
TaiI	ACGT	8 cut(s)	114, 318, 462, 855, 1191, 1371, 1651, 2038
TaqII	GACCGA	1 cut(s)	320
TatI	WGTACW	3 cut(s)	516, 1350, 1548
TauI	GCSGC	6 cut(s)	375, 560, 603, 606, 741, 1839
TfiI	GAWTC	6 cut(s)	525, 970, 1345, 1450, 1967, 2183
Tru1I	TTAA	3 cut(s)	1341, 2021, 2464
Tru9I	TTAA	3 cut(s)	1341, 2021, 2464
TscAI	CASTG	2 cut(s)	580, 1945
TseFI	GTSAC	5 cut(s)	925, 1117, 2068, 2148, 2239
TseI	GCWGC	3 cut(s)	919, 1777, 2336
Tsp45I	GTSAC	5 cut(s)	925, 1117, 2068, 2148, 2239
TspDTI	ATGAA	4 cut(s)	1845, 2268, 2300, 2448
TspGWI	ACGGA	2 cut(s)	316, 627
TspRI	CASTG	2 cut(s)	580, 1945
Tth111I	GACNNNGTC	1 cut(s)	307
Van91I	CCANNNNNTGG	3 cut(s)	483, 1277, 2236
VpaK11BI	GGWCC	2 cut(s)	1480, 1877
XapI	RAATTY	4 cut(s)	1333, 1606, 1681, 1759
XmnI	GAANNNNTTC	1 cut(s)	2430
XspI	CTAG	3 cut(s)	1161, 1727, 2039
ZraI	GACGTC	2 cut(s)	460, 853
ZrmI	AGTACT	1 cut(s)	1352
Zsp2I	ATGCAT	3 cut(s)	664, 1867, 2302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.