Rroxscaffold_1G00059780

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
81867796 .. 81869616
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059780.1

Sequence Viewer

Length: 1272 bp
ATGTCGCACATTACGCTTATTCTCTCTTCTGTTATTGTCCTTCTCCTCTCCACTTCACCTCCAACCTCTGGTTCTGTCTACGACGACTTCGTTCAATGCCTGAACTCCCACCCAAACTCCTCAGCCTCCAAGATAGTCATCCCCCAAAACAACCCTTCTTTCACTTCAACTCTCAGAGCCTACATCGGCAACTCTCGCTTCAACACCTCCACGACTCCAAAACCAGTCCTCATCCTCACGCCAACGACCGAGTCCCACGTCCAGGCCTCCGTCCTCTGCGCCAAGAAACTCGGCGTCCAGCTCAAAGTCCGAAGCGGCGGACACGACTACGAGGGAATCTCATATGTCTCGACTGAACAGAGTTTCATAGTCCTTGATATGTTCAACCTCCAGTCAATCAAACCGGTGAGTTCTCCAACCAAGAAGGGTGAGAAAACTGTTAGGATCTCAATTTTGGCACAGTTTTTAGGCAATGCTAATAAGCTGGTTTCCATTTTGGGTAATCAGTTTCCTGAATTGGGTTTGAAGAAAGAGGACTGTTTGGAAATGAGCTGGATCGAGTCCGTGGTTTGGTGGAACGATGGTTCGACTCCCAACGTGACCAAACCAGAGTCTTTGCTCAATCGAAACCTTAACCATGCGAGTTTCTTGAAGAGGAAGTCAGATTATGTCCAGACACCGATTTCGCGAGAGGGGTTGGAGGCATTGTGGAAGAAGTTGATGGAAGTTGGGAAGACTGGCTTGGTATTCAATCCTTACGGAGGGAAAATGGCTCAGATTTCGGCCTCGGATGCGCCTTTTCCTCACCGGGCTGGGAACTTGTTTAAGATTCAGTACTCGGTAGGGTGGAATATTGCAGGAGAGGAAGCAGCTAATGAGTATCTTAACCAAACGAGGGTGCTATACAGTTTCATGACCCCATTTGTGTCCAAGAACCCAAGGAGTGCTTTCTTGAACTATAGGGACCTTGACATTGGTGTTAACACATTTGGGAAGGATAGATATGAACAGGGGAAGGTTTATGGATTGAAGTACTTCAATGACAATTTCTATAGGTTGGTAAAGGTGAAGACTGCTGTGGATCCAGAAAATTTCTTCAGGAATGAGCAAAATGCAAATCAAGCAGCTCATTTGATTGCATTGTATGAAATTAATGCGATTTCTTCGGTTAAGGGTAGAGCCTATCTAGTTGGCTCTATACTTGATCTTCATAAAGATATGCCTGTAACTGCTAGTGATGAACCACGTAACGCTGTTTTGTCTCTCTCTTGA

Protein Analysis

423

Amino Acids

46.98

Weight (kDa)

9.13

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 77 - 135 6.6e-06 FAD binding domain
BBE PF08031 316 - 371 4.1e-15 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 688
AciI CCGC 2 cut(s) 315, 318
AclWI GGATC 4 cut(s) 452, 563, 1076, 1089
AcsI RAATTY 1 cut(s) 1090
AcuI CTGAAG 1 cut(s) 1081
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 836, 1034
AfiI CCNNNNNNNGG 6 cut(s) 68, 262, 518, 570, 761, 895
AgeI ACCGGT 1 cut(s) 403
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 261
AjuI GAANNNNNNNTTGG 4 cut(s) 55, 87, 725, 757
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
AluBI AGCT 5 cut(s) 301, 484, 552, 872, 1127
AluI AGCT 5 cut(s) 301, 484, 552, 872, 1127
Alw26I GTCTC 2 cut(s) 352, 1266
AlwI GGATC 4 cut(s) 452, 563, 1076, 1089
AoxI GGCC 2 cut(s) 264, 783
ApeKI GCWGC 2 cut(s) 869, 1124
ApoI RAATTY 1 cut(s) 1090
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AseI ATTAAT 1 cut(s) 1152
AsiGI ACCGGT 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 281, 796
AspS9I GGNCC 1 cut(s) 964
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 5 cut(s) 48, 418, 440, 797, 1078
AvaII GGWCC 1 cut(s) 964
BamHI GGATCC 1 cut(s) 1081
BbsI GAAGAC 2 cut(s) 740, 1076
BbvCI CCTCAGC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 881, 1136
BccI CCATC 2 cut(s) 575, 715
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 809
BcoDI GTCTC 2 cut(s) 352, 1266
BfaI CTAG 2 cut(s) 1187, 1233
BfmI CTRYAG 2 cut(s) 958, 1051
BisI GCNGC 3 cut(s) 316, 870, 1125
BlsI GCNGC 3 cut(s) 317, 871, 1126
BmcAI AGTACT 2 cut(s) 836, 1034
Bme1390I CCNGG 2 cut(s) 263, 809
Bme18I GGWCC 1 cut(s) 964
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 2 cut(s) 965, 1083
BmrFI CCNGG 2 cut(s) 263, 809
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 740, 1076
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 809
BsaAI YACGTR 1 cut(s) 1247
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 564, 786, 938
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 6 cut(s) 43, 73, 101, 131, 692, 722
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 262, 518, 570, 761, 895
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 3 cut(s) 224, 391, 742
Bse3DI GCAATG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 3 cut(s) 564, 786, 938
BseGI GGATG 3 cut(s) 138, 231, 796
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 6 cut(s) 68, 262, 518, 570, 761, 895
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 3 cut(s) 135, 187, 788
BseNI ACTGG 3 cut(s) 224, 391, 742
BseRI GAGGAG 2 cut(s) 35, 109
BseXI GCAGC 2 cut(s) 881, 1136
BseYI CCCAGC 1 cut(s) 812
Bsh1236I CGCG 1 cut(s) 688
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 266, 785
BshTI ACCGGT 1 cut(s) 403
BsiEI CGRYCG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 404, 808
BslFI GGGAC 2 cut(s) 238, 977
BslI CCNNNNNNNGG 6 cut(s) 68, 262, 518, 570, 761, 895
BsmAI GTCTC 2 cut(s) 352, 1266
BsmFI GGGAC 2 cut(s) 238, 977
BsnI GGCC 2 cut(s) 266, 785
Bsp143I GATC 4 cut(s) 444, 555, 1081, 1204
Bsp68I TCGCGA 1 cut(s) 688
BspACI CCGC 2 cut(s) 315, 318
BspANI GGCC 2 cut(s) 266, 785
BspCNI CTCAG 3 cut(s) 134, 186, 787
BspFNI CGCG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 965, 1083
BspPI GGATC 4 cut(s) 452, 563, 1076, 1089
BsrDI GCAATG 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 3 cut(s) 224, 391, 742
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 3 cut(s) 564, 786, 938
BssMI GATC 4 cut(s) 444, 555, 1081, 1204
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 938
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 4 cut(s) 439, 462, 539, 908
Bst6I CTCTTC 2 cut(s) 31, 647
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 1247
BstDEI CTNAG 3 cut(s) 121, 173, 774
BstDSI CCRYGG 1 cut(s) 564
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 3 cut(s) 138, 231, 796
BstFNI CGCG 1 cut(s) 688
BstHHI GCGC 2 cut(s) 281, 796
BstKTI GATC 4 cut(s) 447, 558, 1084, 1207
BstMAI GTCTC 2 cut(s) 352, 1266
BstMBI GATC 4 cut(s) 444, 555, 1081, 1204
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 13, 195, 791, 1121
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 261, 807
BstSFI CTRYAG 2 cut(s) 958, 1051
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 2 cut(s) 881, 1136
BstV2I GAAGAC 2 cut(s) 740, 1076
BstX2I RGATCY 2 cut(s) 444, 1081
BstYI RGATCY 2 cut(s) 444, 1081
BsuRI GGCC 2 cut(s) 266, 785
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 3 cut(s) 138, 231, 796
BtuMI TCGCGA 1 cut(s) 688
CciI TCATGA 1 cut(s) 912
CfoI GCGC 2 cut(s) 281, 796
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 964
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 835, 1033
CspAI ACCGGT 1 cut(s) 403
CviAII CATG 2 cut(s) 638, 913
CviQI GTAC 2 cut(s) 835, 1033
DdeI CTNAG 3 cut(s) 121, 173, 774
DpnI GATC 4 cut(s) 446, 557, 1083, 1206
DpnII GATC 4 cut(s) 444, 555, 1081, 1204
Eam1104I CTCTTC 2 cut(s) 31, 647
EarI CTCTTC 2 cut(s) 31, 647
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 938
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 1081
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 938
FaeI CATG 2 cut(s) 641, 916
FalI AAGNNNNNCTT 4 cut(s) 725, 757, 931, 963
FaqI GGGAC 2 cut(s) 238, 977
FatI CATG 2 cut(s) 637, 912
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 316, 870, 1125
FokI GGATG 3 cut(s) 125, 218, 803
Fsp4HI GCNGC 3 cut(s) 316, 870, 1125
FspBI CTAG 2 cut(s) 1187, 1233
GlaI GCGC 2 cut(s) 280, 795
GluI GCNGC 3 cut(s) 316, 870, 1125
GsaI CCCAGC 1 cut(s) 816
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 266, 785
HapII CCGG 2 cut(s) 404, 808
HgaI GACGC 1 cut(s) 283
HhaI GCGC 2 cut(s) 281, 796
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 641, 916
Hin6I GCGC 2 cut(s) 279, 794
HinP1I GCGC 2 cut(s) 279, 794
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HinfI GANTC 7 cut(s) 214, 251, 336, 560, 589, 611, 829
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 2 cut(s) 404, 808
HphI GGTGA 5 cut(s) 48, 418, 440, 797, 1078
Hpy166II GTNNAC 2 cut(s) 79, 982
Hpy188I TCNGA 5 cut(s) 176, 311, 664, 777, 790
Hpy8I GTNNAC 2 cut(s) 79, 982
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 50, 165, 418, 988, 1009
HpyCH4III ACNGT 4 cut(s) 439, 462, 539, 908
HpyCH4IV ACGT 3 cut(s) 258, 597, 1246
HpyCH4V TGCA 3 cut(s) 857, 1115, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 195, 791, 1121
HpyF3I CTNAG 3 cut(s) 121, 173, 774
HpySE526I ACGT 3 cut(s) 258, 597, 1246
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 641, 916
HspAI GCGC 2 cut(s) 279, 794
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 4 cut(s) 444, 555, 1081, 1204
Lsp1109I GCAGC 2 cut(s) 881, 1136
LweI GCATC 1 cut(s) 781
MaeI CTAG 2 cut(s) 1187, 1233
MaeII ACGT 3 cut(s) 258, 597, 1246
MaeIII GTNAC 3 cut(s) 598, 1225, 1247
MalI GATC 4 cut(s) 446, 557, 1083, 1206
MboI GATC 4 cut(s) 444, 555, 1081, 1204
MboII GAAGA 9 cut(s) 18, 538, 664, 724, 745, 1081, 1087, 1155, 1199
MflI RGATCY 2 cut(s) 444, 1081
MluCI AATT 5 cut(s) 450, 515, 1045, 1090, 1149
MlyI GAGTC 5 cut(s) 208, 260, 569, 583, 620
MmeI TCCRAC 3 cut(s) 86, 440, 678
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 6 cut(s) 633, 825, 885, 981, 1152, 1170
MspI CCGG 2 cut(s) 404, 808
MspR9I CCNGG 2 cut(s) 263, 809
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 4 cut(s) 13, 195, 791, 1121
NciI CCSGG 1 cut(s) 809
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 444, 555, 1081, 1204
NlaIII CATG 2 cut(s) 641, 916
NlaIV GGNNCC 2 cut(s) 965, 1083
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 598
NruI TCGCGA 1 cut(s) 688
PagI TCATGA 1 cut(s) 912
PceI AGGCCT 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 2 cut(s) 336, 829
PflFI GACNNNGTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 403
PkrI GCNGC 3 cut(s) 317, 871, 1126
PleI GAGTC 5 cut(s) 208, 259, 568, 583, 619
PpsI GAGTC 5 cut(s) 208, 259, 568, 583, 619
Ppu21I YACGTR 1 cut(s) 1247
PpuMI RGGWCCY 1 cut(s) 964
PshBI ATTAAT 1 cut(s) 1152
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 965, 1083
PspPI GGNCC 1 cut(s) 964
PspPPI RGGWCCY 1 cut(s) 964
PsuI RGATCY 2 cut(s) 444, 1081
PsyI GACNNNGTC 1 cut(s) 250
RruI TCGCGA 1 cut(s) 688
RsaI GTAC 2 cut(s) 836, 1034
RsaNI GTAC 2 cut(s) 835, 1033
SaqAI TTAA 6 cut(s) 633, 825, 885, 981, 1152, 1170
SatI GCNGC 3 cut(s) 316, 870, 1125
Sau3AI GATC 4 cut(s) 444, 555, 1081, 1204
Sau96I GGNCC 1 cut(s) 964
ScaI AGTACT 2 cut(s) 836, 1034
SchI GAGTC 5 cut(s) 208, 260, 569, 583, 620
ScrFI CCNGG 2 cut(s) 263, 809
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 2 cut(s) 958, 1051
SinI GGWCC 1 cut(s) 964
Sse9I AATT 5 cut(s) 450, 515, 1045, 1090, 1149
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 2 cut(s) 315, 318
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 1187, 1233
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 261, 807
StyI CCWWGG 1 cut(s) 938
TaaI ACNGT 4 cut(s) 439, 462, 539, 908
TaiI ACGT 3 cut(s) 261, 600, 1249
TaqI TCGA 4 cut(s) 350, 558, 587, 625
TaqII GACCGA 1 cut(s) 263
TasI AATT 5 cut(s) 450, 515, 1045, 1090, 1149
TatI WGTACW 2 cut(s) 834, 1032
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 2 cut(s) 336, 829
Tru1I TTAA 6 cut(s) 633, 825, 885, 981, 1152, 1170
Tru9I TTAA 6 cut(s) 633, 825, 885, 981, 1152, 1170
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 869, 1124
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 6 cut(s) 355, 901, 1020, 1161, 1199, 1254
TspGWI ACGGA 3 cut(s) 259, 553, 774
Tth111I GACNNNGTC 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 964
VspI ATTAAT 1 cut(s) 1152
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 1 cut(s) 1090
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 2 cut(s) 1187, 1233
ZrmI AGTACT 2 cut(s) 836, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.