Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Reverse (-)

12290956 .. 12292037

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGGAGGATCTGTTTTGGGCTATCAGAGGCGGCGGTGGTGGAAGCTTTGGTGTGATCATTTCTTATAAATTGAAGTTGGTTCCGGTGCCGGAAACGGTTACGGTTTTCCGGGTGATGAGTTACACAGAAGGTAATGCAACCGACGTCGTTTTGAGGTGGCAGGAGGTGGCGCCGACCACGGTGGATGATTTGTGGATGAGGATGTTGTTGCAGCCGGTGACTTCTCCGACCAACAAGGGGAAGAAGACTGTTAGGATTTCGATTCTGGCAGAGTATTTAGGCAATGCTAATCAGTTAGTTTCTATTTTGGGTAAGGAGTTTCCTGAATTGGGTTTGAAGAAGGAGGACTGTTTGGAAATGAGTTGGATTGAGTCTGTGCTTTGGTGGAACGATGGTTCAACTCCCAATGTGACCAAACCAGAGGTTTTGCTTGATCGAAATCTCGACCAGGCGAGTTTCGGGAAGAGGAAGTCAGATTACGTGCAGACCCCGATTTCGAGAGAAGGGTTGGAGTCATTGTGGAAGAAGATGATTGAAGGCAAGACTGGTTTGGTGTTCAATCCATATGGTGGGAAAATGGCTCAGATTTCGGCGTCCGATGCGCCTTTTCCTCACCGGGCCGGGAATTTGTTTAAGATTCAGTACTCGGTGAATTGGGACGTTGCAGGAGAGGAAGCAACTAATGAGTATTTGAACCAAAGTAGGGTGCTTTACAGTTTTATGACCCCATTTGTGTCCAAGAATCCCAGGAGTGCTTTCTTGAACTATAGGGACCTTGACATTGGTGTCAACAATTTTGGGAAGAATAGCTTTGAACAAGGGAAGGTGTATGGATTGATGTACTTCAACGACAATTTTGATAGGTTGGTGAAGGTGAAGACTGCTGTTGATCCAGGAAATTTCTTCAGGAATGAGCAGAGTATCCCACCTCTTCCAAGTAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

316

Amino Acids

35.61

Weight (kDa)

6.67

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	253 - 310	8.1e-18	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AasI	GACNNNNNNGTC	1 cut(s)	788
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	88, 172
AccB7I	CCANNNNNTGG	1 cut(s)	572
AciI	CCGC	2 cut(s)	33, 36
AclWI	GGATC	2 cut(s)	18, 887
AcsI	RAATTY	2 cut(s)	628, 901
AcuI	CTGAAG	1 cut(s)	892
AcyI	GRCGYC	3 cut(s)	147, 173, 596
AfaI	GTAC	2 cut(s)	647, 845
AfiI	CCNNNNNNNGG	4 cut(s)	240, 332, 572, 706
AgsI	TTSAA	9 cut(s)	76, 340, 402, 539, 562, 697, 766, 818, 850
AjnI	CCWGG	3 cut(s)	450, 749, 895
AloI	GAACNNNNNNTCC	2 cut(s)	382, 414
AluBI	AGCT	2 cut(s)	48, 813
AluI	AGCT	2 cut(s)	48, 813
AlwI	GGATC	2 cut(s)	18, 887
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	628, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AspLEI	GCGC	2 cut(s)	175, 607
AspS9I	GGNCC	2 cut(s)	621, 775
AsuC2I	CCSGG	3 cut(s)	113, 620, 625
AsuHPI	GGTGA	6 cut(s)	127, 232, 608, 664, 883, 889
AvaII	GGWCC	1 cut(s)	775
BanI	GGYRCC	2 cut(s)	88, 172
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BbsI	GAAGAC	2 cut(s)	254, 887
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	3 cut(s)	452, 751, 897
BciVI	GTATCC	1 cut(s)	935
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	3 cut(s)	113, 620, 625
BfmI	CTRYAG	1 cut(s)	769
BfoI	RGCGCY	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	2 cut(s)	34, 215
BlsI	GCNGC	2 cut(s)	35, 216
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	6 cut(s)	113, 452, 620, 625, 751, 897
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	621, 775
BmiI	GGNNCC	4 cut(s)	84, 90, 174, 776
BmrFI	CCNGG	6 cut(s)	113, 452, 620, 625, 751, 897
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	254, 887
BpuMI	CCSGG	3 cut(s)	113, 620, 625
BsaAI	YACGTR	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	3 cut(s)	147, 173, 596
BsaJI	CCNNGG	2 cut(s)	180, 749
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 506, 536
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 332, 572, 706
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	452, 751, 897
BseDI	CCNNGG	2 cut(s)	180, 749
BseGI	GGATG	3 cut(s)	193, 204, 210
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	4 cut(s)	240, 332, 572, 706
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	623
BshNI	GGYRCC	2 cut(s)	88, 172
BsiSI	CCGG	6 cut(s)	86, 92, 112, 218, 619, 624
BslFI	GGGAC	2 cut(s)	674, 788
BslI	CCNNNNNNNGG	4 cut(s)	240, 332, 572, 706
BsmFI	GGGAC	2 cut(s)	674, 788
BsnI	GGCC	1 cut(s)	623
Bsp143I	GATC	4 cut(s)	10, 57, 436, 892
BspACI	CCGC	2 cut(s)	33, 36
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	84, 90, 174, 776
BspPI	GGATC	2 cut(s)	18, 887
BspT107I	GGYRCC	2 cut(s)	88, 172
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	180, 749
BssMI	GATC	4 cut(s)	10, 57, 436, 892
BssNI	GRCGYC	3 cut(s)	147, 173, 596
Bst2UI	CCWGG	3 cut(s)	452, 751, 897
Bst4CI	ACNGT	6 cut(s)	100, 106, 184, 253, 353, 719
Bst6I	CTCTTC	2 cut(s)	461, 939
BstACI	GRCGYC	3 cut(s)	147, 173, 596
BstBAI	YACGTR	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	585
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	193, 204, 210
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	175, 607
BstKTI	GATC	4 cut(s)	13, 60, 439, 895
BstMBI	GATC	4 cut(s)	10, 57, 436, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	3 cut(s)	452, 751, 897
BstSCI	CCNGG	6 cut(s)	111, 450, 618, 623, 749, 895
BstSFI	CTRYAG	1 cut(s)	769
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	2 cut(s)	254, 887
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	193, 204, 210
CfoI	GCGC	2 cut(s)	175, 607
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	621, 775
CseI	GACGC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	646, 844
CviJI	RGCY	6 cut(s)	23, 48, 217, 584, 623, 813
CviKI_1	RGCY	6 cut(s)	23, 48, 217, 584, 623, 813
CviQI	GTAC	2 cut(s)	646, 844
DdeI	CTNAG	1 cut(s)	585
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	4 cut(s)	12, 59, 438, 894
DpnII	GATC	4 cut(s)	10, 57, 436, 892
DrdI	GACNNNNNNGTC	1 cut(s)	788
DseDI	GACNNNNNNGTC	1 cut(s)	788
Eam1104I	CTCTTC	2 cut(s)	461, 939
EarI	CTCTTC	2 cut(s)	461, 939
Eco47I	GGWCC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	3 cut(s)	450, 749, 895
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaiI	YATR	6 cut(s)	69, 568, 570, 725, 771, 834
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	674, 788
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	34, 215
FokI	GGATG	3 cut(s)	200, 211, 217
Fsp4HI	GCNGC	2 cut(s)	34, 215
GlaI	GCGC	2 cut(s)	174, 606
GluI	GCNGC	2 cut(s)	34, 215
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	6 cut(s)	86, 92, 112, 218, 619, 624
HgaI	GACGC	1 cut(s)	585
HhaI	GCGC	2 cut(s)	175, 607
Hin1I	GRCGYC	3 cut(s)	147, 173, 596
Hin6I	GCGC	2 cut(s)	173, 605
HinP1I	GCGC	2 cut(s)	173, 605
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	5 cut(s)	265, 374, 515, 640, 745
HpaII	CCGG	6 cut(s)	86, 92, 112, 218, 619, 624
HphI	GGTGA	6 cut(s)	127, 232, 608, 664, 883, 889
Hpy166II	GTNNAC	1 cut(s)	793
Hpy188I	TCNGA	5 cut(s)	29, 231, 478, 588, 601
Hpy188III	TCNNGA	6 cut(s)	326, 446, 463, 501, 763, 910
Hpy8I	GTNNAC	1 cut(s)	793
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	6 cut(s)	125, 337, 500, 533, 820, 868
HpyCH4III	ACNGT	6 cut(s)	100, 106, 184, 253, 353, 719
HpyCH4IV	ACGT	3 cut(s)	147, 483, 663
HpyCH4V	TGCA	4 cut(s)	140, 214, 487, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	3 cut(s)	147, 483, 663
Hsp92I	GRCGYC	3 cut(s)	147, 173, 596
HspAI	GCGC	2 cut(s)	173, 605
KasI	GGCGCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	10, 57, 436, 892
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	3 cut(s)	147, 483, 663
MaeIII	GTNAC	4 cut(s)	100, 122, 220, 412
MalI	GATC	4 cut(s)	12, 59, 438, 894
MboI	GATC	4 cut(s)	10, 57, 436, 892
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	7 cut(s)	71, 329, 628, 655, 796, 856, 901
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	383, 524
MmeI	TCCRAC	3 cut(s)	254, 347, 492
MseI	TTAA	1 cut(s)	636
MspI	CCGG	6 cut(s)	86, 92, 112, 218, 619, 624
MspR9I	CCNGG	6 cut(s)	113, 452, 620, 625, 751, 897
MvaI	CCWGG	3 cut(s)	452, 751, 897
MwoI	GCNNNNNNNGC	1 cut(s)	602
NarI	GGCGCC	1 cut(s)	173
NciI	CCSGG	3 cut(s)	113, 620, 625
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	4 cut(s)	10, 57, 436, 892
NlaIV	GGNNCC	4 cut(s)	84, 90, 174, 776
NmuCI	GTSAC	2 cut(s)	220, 412
PfeI	GAWTC	3 cut(s)	265, 640, 745
PflMI	CCANNNNNTGG	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	35, 216
PleI	GAGTC	2 cut(s)	382, 523
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	2 cut(s)	382, 523
Ppu21I	YACGTR	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	775
PsiI	TTATAA	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	3 cut(s)	450, 749, 895
PspGI	CCWGG	3 cut(s)	450, 749, 895
PspN4I	GGNNCC	4 cut(s)	84, 90, 174, 776
PspPI	GGNCC	2 cut(s)	621, 775
PspPPI	RGGWCCY	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	647, 845
RsaNI	GTAC	2 cut(s)	646, 844
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	2 cut(s)	34, 215
Sau3AI	GATC	4 cut(s)	10, 57, 436, 892
Sau96I	GGNCC	2 cut(s)	621, 775
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	2 cut(s)	383, 524
ScrFI	CCNGG	6 cut(s)	113, 452, 620, 625, 751, 897
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	769
SfoI	GGCGCC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	775
Sse9I	AATT	7 cut(s)	71, 329, 628, 655, 796, 856, 901
SsiI	CCGC	2 cut(s)	33, 36
SspDI	GGCGCC	1 cut(s)	172
StyD4I	CCNGG	6 cut(s)	111, 450, 618, 623, 749, 895
TaaI	ACNGT	6 cut(s)	100, 106, 184, 253, 353, 719
TaiI	ACGT	3 cut(s)	150, 486, 666
TaqI	TCGA	4 cut(s)	263, 439, 447, 500
TasI	AATT	7 cut(s)	71, 329, 628, 655, 796, 856, 901
TatI	WGTACW	2 cut(s)	645, 843
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	265, 640, 745
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	220, 412
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	2 cut(s)	220, 412
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	628, 901
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.