AT1G12340

cornichon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002446
Physical Location & Seq
Forward (+)
4197396 .. 4198310
915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12340.1

Sequence Viewer

Length: 390 bp
ATGAGAGGAGTCACTGAGACTGATAAGCTAGCAAACGGAATCTTCCATCTTGTTTGCTTAGCGGATCTCGAGTTTGATTATATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTTTTACCGGAGTTCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGTTCATGACACTCTTATGTCTCCCCTATCTCTACTACAATTTCCATCTTTACTCGAAGCGACAACACTTAGTAGATGTCACCGAGATCTTCAATTTGCTAAACTGGGAGAAGAAGAAACGGCTGTTCAAGCTTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGGATGATTACGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
Cornichon

Protein Analysis

129

Amino Acids

15.38

Weight (kDa)

5.46

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 13 - 117 2.3e-41 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 72
AgsI TTSAA 3 cut(s) 143, 274, 310
AhdI GACNNNNNGTC 1 cut(s) 100
AluBI AGCT 2 cut(s) 28, 313
AluI AGCT 2 cut(s) 28, 313
Alw26I GTCTC 2 cut(s) 11, 206
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 68
AspLEI GCGC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 253
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 68
BccI CCATC 2 cut(s) 54, 234
BceAI ACGGC 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 11, 206
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 371
BglII AGATCT 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 58
BmeRI GACNNNNNGTC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 295
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 295
Bpu1102I GCTNAGC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 185, 290
BseGI GGATG 2 cut(s) 360, 379
BseMII CTCAG 2 cut(s) 6, 129
BseNI ACTGG 2 cut(s) 185, 290
BseRI GAGGAG 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 2 cut(s) 11, 206
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 64, 267
Bsp1720I GCTNAGC 1 cut(s) 58
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 7, 128
BspHI TCATGA 1 cut(s) 186
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 72
BsrI ACTGG 2 cut(s) 185, 290
BssMI GATC 2 cut(s) 64, 267
BstC8I GCNNGC 2 cut(s) 30, 315
BstDEI CTNAG 4 cut(s) 15, 58, 115, 250
BstF5I GGATG 2 cut(s) 360, 379
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 67, 270
BstMAI GTCTC 2 cut(s) 11, 206
BstMBI GATC 2 cut(s) 64, 267
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 64, 267
BstYI RGATCY 2 cut(s) 64, 267
BtsCI GGATG 2 cut(s) 360, 379
BtsIMutI CAGTG 3 cut(s) 12, 123, 178
Cac8I GCNNGC 2 cut(s) 30, 315
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 370
CseI GACGC 1 cut(s) 90
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 28, 304, 313
CviKI_1 RGCY 3 cut(s) 28, 304, 313
DdeI CTNAG 4 cut(s) 15, 58, 115, 250
DpnI GATC 2 cut(s) 66, 269
DpnII GATC 2 cut(s) 64, 267
DriI GACNNNNNGTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 68
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 81, 154, 188, 199
FatI CATG 1 cut(s) 186
FokI GGATG 2 cut(s) 367, 386
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 371
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 370
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 3 cut(s) 9, 39, 95
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 68, 105, 187, 352
Hpy99I CGWCG 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 4 cut(s) 15, 58, 115, 250
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 64, 267
LpnPI CCDG 6 cut(s) 141, 159, 166, 271, 337, 356
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 10, 259
MalI GATC 2 cut(s) 66, 269
MboI GATC 2 cut(s) 64, 267
MboII GAAGA 5 cut(s) 34, 262, 304, 307, 340
MflI RGATCY 2 cut(s) 64, 267
MluCI AATT 2 cut(s) 220, 274
MlyI GAGTC 2 cut(s) 18, 89
MnlI CCTC 3 cut(s) 176, 344, 376
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 196
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 2 cut(s) 64, 267
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 10, 259
PaeR7I CTCGAG 1 cut(s) 68
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 39
PleI GAGTC 2 cut(s) 17, 89
PpsI GAGTC 2 cut(s) 17, 89
PsuI RGATCY 2 cut(s) 64, 267
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 64, 267
SchI GAGTC 2 cut(s) 18, 89
SetI ASST 4 cut(s) 30, 168, 315, 336
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 220, 274
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 29
TaqI TCGA 3 cut(s) 69, 104, 236
TasI AATT 2 cut(s) 220, 274
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 3 cut(s) 19, 123, 185
TseFI GTSAC 2 cut(s) 10, 259
Tsp45I GTSAC 2 cut(s) 10, 259
TspDTI ATGAA 2 cut(s) 124, 175
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 3 cut(s) 19, 123, 185
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.