AT1G12390

cornichon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002446
Physical Location & Seq
Forward (+)
4220044 .. 4221803
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12390.1

Sequence Viewer

Length: 414 bp
ATGGGAGATATCTGGACATGGCTTATTTCCTTCTTCTTCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCGGATCTCGAGTTTGATTACATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTTTTACCGGAGTTCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGTTCATGACACTCTTATGTCTCCCCTATCTATACTACAACTTCCATCTTTACTCGAAGCGACAACACTTAGTAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGCTTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGGATGATTACGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.44

Weight (kDa)

4.97

Isoelectric Point (pI)

24.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 6e-45 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 96
AgsI TTSAA 3 cut(s) 167, 298, 334
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 2 cut(s) 73, 337
AluI AGCT 2 cut(s) 73, 337
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 92
AspLEI GCGC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 92
BccI CCATC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 395
BglII AGATCT 1 cut(s) 291
BlpI GCTNAGC 1 cut(s) 82
BmeRI GACNNNNNGTC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 209, 314
BseGI GGATG 2 cut(s) 384, 403
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 209, 314
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 2 cut(s) 88, 291
Bsp1720I GCTNAGC 1 cut(s) 82
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 210
BspPI GGATC 1 cut(s) 96
BsrI ACTGG 2 cut(s) 209, 314
BssMI GATC 2 cut(s) 88, 291
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 82, 139, 274
BstF5I GGATG 2 cut(s) 384, 403
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 91, 294
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 88, 291
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 88, 291
BstYI RGATCY 2 cut(s) 88, 291
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 384, 403
BtsIMutI CAGTG 2 cut(s) 147, 202
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 394
CseI GACGC 1 cut(s) 114
CviAII CATG 2 cut(s) 18, 211
CviJI RGCY 4 cut(s) 22, 73, 328, 337
CviKI_1 RGCY 4 cut(s) 22, 73, 328, 337
DdeI CTNAG 3 cut(s) 82, 139, 274
DpnI GATC 2 cut(s) 90, 293
DpnII GATC 2 cut(s) 88, 291
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 10
FaeI CATG 2 cut(s) 21, 214
FaiI YATR 5 cut(s) 19, 178, 212, 223, 238
FatI CATG 2 cut(s) 17, 210
FokI GGATG 2 cut(s) 391, 410
GlaI GCGC 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 395
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 394
Hin1II CATG 2 cut(s) 21, 214
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 57, 119
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 5 cut(s) 13, 92, 129, 211, 376
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 3 cut(s) 82, 139, 274
Hsp92II CATG 2 cut(s) 21, 214
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 2 cut(s) 88, 291
LpnPI CCDG 6 cut(s) 165, 183, 190, 295, 361, 380
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 90, 293
MboI GATC 2 cut(s) 88, 291
MboII GAAGA 5 cut(s) 25, 28, 286, 331, 364
MflI RGATCY 2 cut(s) 88, 291
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 4 cut(s) 50, 200, 368, 400
MseI TTAA 2 cut(s) 306, 354
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 2 cut(s) 88, 291
NlaIII CATG 2 cut(s) 21, 214
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 92
PagI TCATGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 57
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 88, 291
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 306, 354
Sau3AI GATC 2 cut(s) 88, 291
SchI GAGTC 1 cut(s) 113
SetI ASST 4 cut(s) 75, 192, 339, 360
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 86
TaqI TCGA 3 cut(s) 93, 128, 260
TasI AATT 1 cut(s) 298
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 306, 354
Tru9I TTAA 2 cut(s) 306, 354
TscAI CASTG 2 cut(s) 147, 209
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 148, 199
TspRI CASTG 2 cut(s) 147, 209
XhoI CTCGAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.