Rh1DG329500

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002446
Physical Location & Seq
Forward (+)
55475757 .. 55476244
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG329500.1

Sequence Viewer

Length: 405 bp
ATGGAGATGCTATGGACATGGCTTTTGAGTATCTTCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTCATGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGGTTTATGCTTCCATTGGCTCTCCCGCACCTATATTATAACGTCAATTCGTACATGAAGGGGCAGCACTTGGCAGATGTGACTGAGATCTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGTTGTTTTGGAGCATTGGAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

134

Amino Acids

15.95

Weight (kDa)

5.23

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 8.8e-40 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AbsI CCTCGAGG 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 309
AciI CCGC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 357
AfaI GTAC 2 cut(s) 142, 257
AgsI TTSAA 2 cut(s) 167, 334
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 73, 309
AluI AGCT 2 cut(s) 73, 309
Alw26I GTCTC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AspS9I GGNCC 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 359
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 309
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 269
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 305
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 2 cut(s) 351, 360
BseMII CTCAG 2 cut(s) 279, 296
BseXI GCAGC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 2 cut(s) 280, 297
BspMI ACCTGC 1 cut(s) 309
BssMI GATC 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 140, 145
BstDEI CTNAG 2 cut(s) 288, 305
BstF5I GGATG 2 cut(s) 351, 360
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 2 cut(s) 351, 360
BveI ACCTGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 141, 256
CviAII CATG 3 cut(s) 18, 76, 259
CviJI RGCY 5 cut(s) 22, 73, 224, 309, 359
CviKI_1 RGCY 5 cut(s) 22, 73, 224, 309, 359
CviQI GTAC 2 cut(s) 141, 256
DdeI CTNAG 2 cut(s) 288, 305
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 21, 79, 262
FatI CATG 3 cut(s) 17, 75, 258
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 2 cut(s) 338, 347
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 359
HgaI GACGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 21, 79, 262
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 140, 145
HpyCH4IV ACGT 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 288, 305
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 21, 79, 262
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 5 cut(s) 165, 295, 314, 341, 368
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 336
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 3 cut(s) 25, 28, 322
MflI RGATCY 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 359
MnlI CCTC 3 cut(s) 88, 101, 374
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MseI TTAA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 21, 79, 262
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 270
PsiI TTATAA 2 cut(s) 194, 243
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 1 cut(s) 88
PspXI VCTCGAGB 1 cut(s) 92
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 142, 257
RsaNI GTAC 2 cut(s) 141, 256
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 356
SetI ASST 6 cut(s) 75, 93, 237, 249, 303, 311
SfaNI GCATC 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 140, 145
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 250
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 28, 111, 275, 340
VpaK11BI GGWCC 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.