FvH4_7g11930

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002446
Physical Location & Seq
Forward (+)
10866130 .. 10869717
3588 bp
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UTR
Exon/CDS
Intron
FvH4_7g11930.t2

Sequence Viewer

Length: 411 bp
ATGGAGATGCTATGGACATGGCTTTTGAGTTTCTTCTTCATCTTAACTCTCCTATGCATTCTGGGTTATCAGCTTGTGTGCTTAGTGGACCTCGAATTTGATTATATCAACCCATATGATTCATCATCTCGGATAAACAATACTGTTTTGCCTGAGTTTATCGTTCAAGGAGTTCTGTGCGTCATTCTTCTTATAACGAGACATTGGTTTATGCTTCTATTGGCTCTCCCGCATCTATATTATAACGTCAATTCGTACATGAAGGGGCGGCACTTGGTAGATGTGACTGAGATCTACAACCAACTGAGCTGGGAGAAAAAACAACGGTTCTTTAAGATTGGCTATTTGTTGGTCCTGTTCATCCTCTCTCTATTCTGGTTGCTTTGGAGCATTGGAGACGAATACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.38

Weight (kDa)

5.21

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 8e-45 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AciI CCGC 2 cut(s) 230, 268
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 73, 309
AluI AGCT 2 cut(s) 73, 309
Alw26I GTCTC 2 cut(s) 193, 390
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 80, 112
AspS9I GGNCC 2 cut(s) 88, 352
AvaII GGWCC 2 cut(s) 88, 352
BcoDI GTCTC 2 cut(s) 193, 390
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 2 cut(s) 88, 352
BmgT120I GGNCC 2 cut(s) 88, 352
BmsI GCATC 1 cut(s) 241
BseGI GGATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 144, 279, 296
BseYI CCCAGC 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 193, 390
BsmBI CGTCTC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 2 cut(s) 230, 268
BspCNI CTCAG 3 cut(s) 145, 280, 297
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 145, 327
BstDEI CTNAG 4 cut(s) 82, 153, 288, 305
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 2 cut(s) 193, 390
BstMBI GATC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BtsCI GGATG 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 88, 352
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 18, 259
CviJI RGCY 5 cut(s) 22, 73, 224, 309, 342
CviKI_1 RGCY 5 cut(s) 22, 73, 224, 309, 342
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 4 cut(s) 82, 153, 288, 305
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 88, 352
EcoT22I ATGCAT 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 2 cut(s) 21, 262
FatI CATG 2 cut(s) 17, 258
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 313
HgaI GACGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 21, 262
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 132
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 145, 327
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 4 cut(s) 82, 153, 288, 305
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 21, 262
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 5 cut(s) 47, 165, 295, 361, 368
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 3 cut(s) 25, 28, 179
MflI RGATCY 1 cut(s) 291
MluCI AATT 2 cut(s) 95, 250
MnlI CCTC 2 cut(s) 101, 374
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 3 cut(s) 44, 333, 409
Mva1269I GAATGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 21, 262
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 59
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 270
PsiI TTATAA 2 cut(s) 194, 243
PspFI CCCAGC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 88, 352
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 44, 333, 409
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 88, 352
SetI ASST 4 cut(s) 75, 93, 249, 311
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 2 cut(s) 88, 352
Sse9I AATT 2 cut(s) 95, 250
SsiI CCGC 2 cut(s) 230, 268
TaaI ACNGT 2 cut(s) 145, 327
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 95, 250
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 44, 333, 409
Tru9I TTAA 3 cut(s) 44, 333, 409
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 28, 111, 275, 349
VpaK11BI GGWCC 2 cut(s) 88, 352
XapI RAATTY 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.