Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002446

Physical Location & Seq

Genomic Coordinates Reverse (-)

36420149 .. 36420544

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGACATGGCTTTTTTGAGTATCTCCTTCATCTTAACTCTCTTATGCCTTGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGGGCGGCACTTGGCAGATGTGACTGAGATCTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGTTGTTTTGGAGCATTGCAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cornichon

Protein Analysis

91

Amino Acids

10.58

Weight (kDa)

4.93

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cornichon	PF03311	4 - 45	7.5e-08	Cornichon protein
Cornichon	PF03311	45 - 82	1.2e-06	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12340 AT1G12390 AT1G62880 AT1G62880
fragaria_vesca	FvH4_5g00840 FvH4_7g11930 FvH4_7g11930
malus_domestica	MD02G1203900.v1.1 MD04G1077700.v1.1 MD06G1074200.v1.1 MD07G1122200.v1.1
prunus_persica	Prupe.2G146000_v2.0.a1 Prupe.2G146000_v2.0.a1 Prupe.5G080900_v2.0.a1
pyrus_communis	pycom04g06930 pycom07g11050
rosa_chinensis	RchiOBHm_Chr1g0350611 RchiOBHm_Chr1g0366241 RchiOBHm_Chr3g0490911 RchiOBHm_Chr3g0492211 RchiOBHm_Chr7g0201081
rosa_laevigata	RLG00000003693 RLG00000028468
rosa_multiflora	Rmu_sc0006553.1_g000016 Rmu_sc0010648.1_g000002 Rmu_sc0017081.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255530
rosa_rugosa	Rorug01G0212600 Rorug01G0328200 Rorug07G0061900 Rorug07G0062000.1
rosa_samantha	Rh1AG336400 Rh1BG195800 Rh1BG298000 Rh1DG329500 Rh7AG187800 Rh7BG191300 Rh7DG193500
rosa_wichuraiana	Rw1G019630 Rw3G026500 Rw7G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AciI	CCGC	2 cut(s)	135, 139
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	122, 205
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
AoxI	GGCC	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	230
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	180
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	222, 231
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	150, 167
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	162
Bsp1720I	GCTNAGC	1 cut(s)	176
BspACI	CCGC	2 cut(s)	135, 139
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	151, 168
BspMI	ACCTGC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	261
BssMI	GATC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	95, 100
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	159, 176
BstF5I	GGATG	2 cut(s)	222, 231
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	222, 231
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	3 cut(s)	11, 180, 230
CviKI_1	RGCY	3 cut(s)	11, 180, 230
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	159, 176
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	10
FaiI	YATR	4 cut(s)	8, 46, 70, 72
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	2 cut(s)	209, 218
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	95, 100
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	159, 176
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	120, 166, 185, 212, 239
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	1 cut(s)	245
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	2 cut(s)	174, 182
SfaNI	GCATC	1 cut(s)	207
SsiI	CCGC	2 cut(s)	135, 139
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	95, 100
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	19, 66, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.