MD04G1077700.v1.1

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002446
Physical Location & Seq
Reverse (-)
10634935 .. 10637886
2952 bp
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UTR
Exon/CDS
Intron
MD04G1077700.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGGAGATCTCTACGTTTGGCTCATCTCCTTCTTCTTCCTCATTGCCCTGCTCGCCCTTGTTGTTTTCCAGCTGATGTGTCTGGCGGATCTTGAGTTTGATTATATCAACCCTTATGACTCTTCAACTCGGATAAACAGAGTGATTTTGCCAGAGTATATCACAGAAGGAGTTTTGTGCGCTCTTTTTCTTATAACAGGGCATTGGTGCATGTCACTGTTTTGTGGTCCGTACCTCTATTATAATGTGAAACTGTATATGAGAAAGAATCATCTGGTAGATGTTACCGAGATATTCAATATGCTTCACAAAGAAAAGAAGATACGGCTTTTCAAACTCTTCTATCTTGTTTTCCTCCTGTTTCTCTCAATATTCTGGATGATTCTAACTGCATTGGAAGACCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.29

Weight (kDa)

5.75

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 125 7.5e-42 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 96
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 3 cut(s) 126, 298, 334
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 405
BceAI ACGGC 1 cut(s) 341
BglII AGATCT 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 42
Bsp143I GATC 2 cut(s) 7, 88
BspACI CCGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 42
BssMI GATC 2 cut(s) 7, 88
Bst4CI ACNGT 2 cut(s) 219, 255
Bst6I CTCTTC 2 cut(s) 127, 344
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 10, 91
BstMBI GATC 2 cut(s) 7, 88
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 7, 88
BstYI RGATCY 2 cut(s) 7, 88
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 211, 404
CviJI RGCY 3 cut(s) 22, 73, 328
CviKI_1 RGCY 3 cut(s) 22, 73, 328
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 9, 90
DpnII GATC 2 cut(s) 7, 88
Eam1104I CTCTTC 2 cut(s) 127, 344
EarI CTCTTC 2 cut(s) 127, 344
EciI GGCGGA 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 227
FaeI CATG 2 cut(s) 214, 407
FatI CATG 2 cut(s) 210, 403
FokI GGATG 1 cut(s) 391
GlaI GCGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 214, 407
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 3 cut(s) 119, 268, 382
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 92, 376
HpyAV CCTTC 2 cut(s) 40, 161
HpyCH4III ACNGT 2 cut(s) 219, 255
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 210, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 214, 407
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 7, 88
LpnPI CCDG 8 cut(s) 62, 68, 83, 165, 183, 260, 361, 371
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 213, 283
MalI GATC 2 cut(s) 9, 90
MboI GATC 2 cut(s) 7, 88
MboII GAAGA 6 cut(s) 25, 28, 114, 331, 331, 410
MflI RGATCY 2 cut(s) 7, 88
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 50, 245, 365
MspA1I CMGCKG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 7, 88
NlaIII CATG 2 cut(s) 214, 407
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 1 cut(s) 214
PfeI GAWTC 2 cut(s) 268, 382
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PsiI TTATAA 2 cut(s) 194, 243
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 2 cut(s) 7, 88
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 7, 88
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 113
SetI ASST 3 cut(s) 18, 75, 237
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 372
TaaI ACNGT 2 cut(s) 219, 255
TaiI ACGT 1 cut(s) 18
TfiI GAWTC 2 cut(s) 268, 382
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.