MD07G1122200.v1.1

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002446
Physical Location & Seq
Forward (+)
15680389 .. 15683764
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1122200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGAGATGCTGTGGACATGGCTGCTGAGTTTCTTCTTCATTCTAGCGTTGTTATGCATTCTGGGTTATCAGCTTGTGTGCTTGGTGGACCTCGAGTATGACTACATCAACCCATATGATTCATCATCTCGGATAAACAATGTCATTTTGCCAGAATTTATTATTCAAGGAGTTTTGTGCTTCATTCTTCTTATAGCGCGACATTGGTTCATGCTTTTCATGGCTCTGCCACACCTATATTATAATGTCAATTTGTACATGACGAGACGACACTTGGTAGATGTGACTGAGATCTATAACCAACTGAGCTGGGAGAAAAAGCAACGCTTTCTTAAGATTGGCTATCTTTTGGTCCTATTCATTCTTTCTTTATTCTGGTTGCTTTGGAGCATTGGAGACGAATACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.54

Weight (kDa)

5.25

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 1.8e-43 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccII CGCG 1 cut(s) 199
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 257
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 73, 309
AluI AGCT 2 cut(s) 73, 309
Alw26I GTCTC 2 cut(s) 259, 390
Ama87I CYCGRG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 88, 352
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 2 cut(s) 88, 352
BbvI GCAGC 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 259, 390
BfaI CTAG 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 332
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 88, 352
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 88, 352
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseMII CTCAG 3 cut(s) 17, 279, 296
BseXI GCAGC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 259, 390
BsmBI CGTCTC 2 cut(s) 259, 390
BsmI GAATGC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 1 cut(s) 291
BspCNI CTCAG 3 cut(s) 18, 280, 297
BspFNI CGCG 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 332
BsrGI TGTACA 1 cut(s) 255
BssMI GATC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 26, 288, 305
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 2 cut(s) 259, 390
BstMBI GATC 1 cut(s) 291
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 88, 352
Csp6I GTAC 1 cut(s) 256
CviAII CATG 4 cut(s) 18, 211, 220, 259
CviJI RGCY 5 cut(s) 22, 73, 224, 309, 342
CviKI_1 RGCY 5 cut(s) 22, 73, 224, 309, 342
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 3 cut(s) 26, 288, 305
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 88, 352
Eco88I CYCGRG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 59
Esp3I CGTCTC 2 cut(s) 259, 390
FaeI CATG 4 cut(s) 21, 214, 223, 262
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 4 cut(s) 17, 210, 219, 258
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 199
Hin1II CATG 4 cut(s) 21, 214, 223, 262
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 15, 88
Hpy188I TCNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 15, 88
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 26, 288, 305
Hsp92II CATG 4 cut(s) 21, 214, 223, 262
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 4 cut(s) 47, 165, 295, 361
Lsp1109I GCAGC 1 cut(s) 9
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 3 cut(s) 25, 28, 179
MflI RGATCY 1 cut(s) 291
MluCI AATT 2 cut(s) 155, 250
MnlI CCTC 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 57
MvnI CGCG 1 cut(s) 199
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 291
NlaIII CATG 4 cut(s) 21, 214, 223, 262
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 92
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 88, 352
PspXI VCTCGAGB 1 cut(s) 92
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 88, 352
SetI ASST 4 cut(s) 75, 93, 237, 311
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 2 cut(s) 88, 352
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 92, 332
SmoI CTYRAG 2 cut(s) 92, 332
Sse9I AATT 2 cut(s) 155, 250
SspMI CTAG 1 cut(s) 44
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 155, 250
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 6 cut(s) 28, 111, 172, 199, 208, 349
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 88, 352
XapI RAATTY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 92
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.