Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002446

Physical Location & Seq

Genomic Coordinates Forward (+)

9440469 .. 9443563

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGATCTCTACGTTTGGCTCATCTCCTTCTTATTCCTCATAGCCTTACTTGCCCTGGTTGTTTTCCAGCTGATGTGTCTAGCGGATCTAGAGTTTGATTATATCAACCCTTATGACTCTTCAAACCGGATAAACAGAGTGATTCTGCCTGAGTATATTGCAGAAGGAGTTCTAGGTGCCTTCTTTCTTCTAACAGGGCATTGGTGCATGTCACTGTTTTGTGGTCCATACCTCTACTATAATGTGAAACTGTATATGAGAAAGCAGCACCTGGTAGATGTTACTGAGATATTCAATATGCTTCACAAAGAAAAGAAGATCCGGCTTTTCAAACTCTTCTATCTTGTTTTCCTCCTGTTTCTCTCGATATTCTGGATGATTCTAACTGCATTGGAAGACCATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cornichon

Protein Analysis

137

Amino Acids

16.31

Weight (kDa)

5.5

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12340 AT1G12390 AT1G62880 AT1G62880
fragaria_vesca	FvH4_5g00840 FvH4_7g11930 FvH4_7g11930
malus_domestica	MD02G1203900.v1.1 MD04G1077700.v1.1 MD06G1074200.v1.1 MD07G1122200.v1.1
prunus_persica	Prupe.2G146000_v2.0.a1 Prupe.2G146000_v2.0.a1 Prupe.5G080900_v2.0.a1
pyrus_communis	pycom04g06930 pycom07g11050
rosa_chinensis	RchiOBHm_Chr1g0350611 RchiOBHm_Chr1g0366241 RchiOBHm_Chr3g0490911 RchiOBHm_Chr3g0492211 RchiOBHm_Chr7g0201081
rosa_laevigata	RLG00000003693 RLG00000028468
rosa_multiflora	Rmu_sc0006553.1_g000016 Rmu_sc0010648.1_g000002 Rmu_sc0017081.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255530
rosa_rugosa	Rorug01G0212600 Rorug01G0328200 Rorug07G0061900 Rorug07G0062000.1
rosa_samantha	Rh1AG336400 Rh1BG195800 Rh1BG298000 Rh1DG329500 Rh7AG187800 Rh7BG191300 Rh7DG193500
rosa_wichuraiana	Rw1G019630 Rw3G026500 Rw7G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	2 cut(s)	96, 316
AgsI	TTSAA	3 cut(s)	126, 298, 334
AjnI	CCWGG	2 cut(s)	57, 273
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AlwI	GGATC	2 cut(s)	96, 316
AlwNI	CAGNNNCTG	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	59, 275
BfaI	CTAG	3 cut(s)	83, 92, 176
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	59, 275
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	59, 275
BpiI	GAAGAC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	59, 275
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	144, 279
BseXI	GCAGC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	130, 325
Bsp143I	GATC	3 cut(s)	7, 88, 321
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	145, 280
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	96, 316
BspT107I	GGYRCC	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	7, 88, 321
Bst2UI	CCWGG	2 cut(s)	59, 275
Bst4CI	ACNGT	2 cut(s)	219, 255
Bst6I	CTCTTC	2 cut(s)	127, 344
BstDEI	CTNAG	2 cut(s)	153, 288
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	3 cut(s)	10, 91, 324
BstMBI	GATC	3 cut(s)	7, 88, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	59, 275
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	57, 273
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	3 cut(s)	7, 88, 321
BstYI	RGATCY	3 cut(s)	7, 88, 321
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	227
CsiI	ACCWGGT	1 cut(s)	273
CviAII	CATG	2 cut(s)	211, 404
CviJI	RGCY	4 cut(s)	22, 47, 73, 328
CviKI_1	RGCY	4 cut(s)	22, 47, 73, 328
DdeI	CTNAG	2 cut(s)	153, 288
DpnI	GATC	3 cut(s)	9, 90, 323
DpnII	GATC	3 cut(s)	7, 88, 321
Eam1104I	CTCTTC	2 cut(s)	127, 344
EarI	CTCTTC	2 cut(s)	127, 344
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	57, 273
FaeI	CATG	2 cut(s)	214, 407
FatI	CATG	2 cut(s)	210, 403
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	3 cut(s)	83, 92, 176
GluI	GCNGC	1 cut(s)	269
HapII	CCGG	2 cut(s)	130, 325
Hin1II	CATG	2 cut(s)	214, 407
HinfI	GANTC	3 cut(s)	119, 145, 382
HpaII	CCGG	2 cut(s)	130, 325
Hpy188III	TCNNGA	3 cut(s)	92, 367, 376
HpyAV	CCTTC	3 cut(s)	40, 161, 193
HpyCH4III	ACNGT	2 cut(s)	219, 255
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	164, 210, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	153, 288
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	214, 407
Kzo9I	GATC	3 cut(s)	7, 88, 321
Lsp1109I	GCAGC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	273
MaeI	CTAG	3 cut(s)	83, 92, 176
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	213, 283
MalI	GATC	3 cut(s)	9, 90, 323
MboI	GATC	3 cut(s)	7, 88, 321
MboII	GAAGA	6 cut(s)	17, 114, 182, 331, 331, 410
MflI	RGATCY	3 cut(s)	7, 88, 321
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	3 cut(s)	50, 245, 365
MroXI	GAANNNNTTC	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	130, 325
MspR9I	CCNGG	2 cut(s)	59, 275
MvaI	CCWGG	2 cut(s)	59, 275
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	3 cut(s)	7, 88, 321
NlaIII	CATG	2 cut(s)	214, 407
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	145, 382
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	57, 273
PspGI	CCWGG	2 cut(s)	57, 273
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	3 cut(s)	7, 88, 321
PvuII	CAGCTG	1 cut(s)	73
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	7, 88, 321
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	59, 275
SetI	ASST	5 cut(s)	18, 75, 181, 237, 276
SexAI	ACCWGGT	1 cut(s)	273
SinI	GGWCC	1 cut(s)	227
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	83, 92, 176
StyD4I	CCNGG	2 cut(s)	57, 273
TaaI	ACNGT	2 cut(s)	219, 255
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	145, 382
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	213
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	227
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	3 cut(s)	83, 92, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.