FvH4_5g00840

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002446
Physical Location & Seq
Forward (+)
472727 .. 475104
2378 bp
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UTR
Exon/CDS
Intron
FvH4_5g00840.t1

Sequence Viewer

Length: 411 bp
ATGGGGGATCTTTTCGTTTGGCTCATCTCCTTCTTCCTCCTTATTACCCTTCTTGCTCTTGTTGTCTTCCAGCTGATGTGCTTAGCAGATCTAGAGTTTGATTATATCAACCCTTATGACTCTTCAGCACGGATTAATAGAGTGGTTTTGCCTGAGTACATCATAGAAGGAGTATTAGGAGCCATATATCTTGTAACAGGGCATTGGATCATGGCACTTTTTACTGCTCCTTACCTCTATTATAATGTGACACTGTATATGAGTAACAGGCACCTCGTAGATGTTACTGAGATATTCAATATGCTTCACAAAGAGAAGAAGCAACGGCTCTTCAAACTCTTCTATCTTGTTTTCCTTCTCTTTCTCTCGATATTCTGGATGATTCTAACTGCATTGGAAGACCACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.15

Weight (kDa)

5.23

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 2.5e-41 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 270
AclWI GGATC 2 cut(s) 15, 215
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 2 cut(s) 298, 334
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 2 cut(s) 15, 215
AseI ATTAAT 1 cut(s) 135
BanI GGYRCC 1 cut(s) 270
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 58, 405
BceAI ACGGC 1 cut(s) 341
BfaI CTAG 1 cut(s) 92
BglII AGATCT 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 181, 272
BpiI GAAGAC 2 cut(s) 58, 405
Bpu1102I GCTNAGC 1 cut(s) 82
BseGI GGATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 144, 279
BshNI GGYRCC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 7, 88, 207
Bsp1720I GCTNAGC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 145, 280
BspLI GGNNCC 2 cut(s) 181, 272
BspPI GGATC 2 cut(s) 15, 215
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 270
BssMI GATC 3 cut(s) 7, 88, 207
BssSI CACGAG 1 cut(s) 404
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 3 cut(s) 127, 335, 344
BstDEI CTNAG 3 cut(s) 82, 153, 288
BstF5I GGATG 1 cut(s) 384
BstKTI GATC 3 cut(s) 10, 91, 210
BstMBI GATC 3 cut(s) 7, 88, 207
BstV2I GAAGAC 2 cut(s) 58, 405
BstX2I RGATCY 2 cut(s) 7, 88
BstYI RGATCY 2 cut(s) 7, 88
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 251
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 211
CviJI RGCY 4 cut(s) 22, 73, 182, 328
CviKI_1 RGCY 4 cut(s) 22, 73, 182, 328
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 82, 153, 288
DpnI GATC 3 cut(s) 9, 90, 209
DpnII GATC 3 cut(s) 7, 88, 207
Eam1104I CTCTTC 3 cut(s) 127, 335, 344
EarI CTCTTC 3 cut(s) 127, 335, 344
Eco57I CTGAAG 1 cut(s) 108
FaeI CATG 1 cut(s) 214
FatI CATG 1 cut(s) 210
FokI GGATG 1 cut(s) 391
FspBI CTAG 1 cut(s) 92
Hin1II CATG 1 cut(s) 214
HinfI GANTC 2 cut(s) 119, 382
Hpy188III TCNNGA 3 cut(s) 92, 367, 376
HpyAV CCTTC 4 cut(s) 40, 59, 161, 365
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 3 cut(s) 82, 153, 288
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 3 cut(s) 7, 88, 207
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 179, 232
LpnPI CCDG 5 cut(s) 83, 165, 183, 253, 361
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 4 cut(s) 193, 247, 263, 283
MalI GATC 3 cut(s) 9, 90, 209
MboI GATC 3 cut(s) 7, 88, 207
MboII GAAGA 7 cut(s) 25, 58, 114, 322, 328, 331, 410
MflI RGATCY 2 cut(s) 7, 88
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 47, 245, 284
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 73
NdeII GATC 3 cut(s) 7, 88, 207
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 181, 272
NmuCI GTSAC 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 382
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 135
PsiI TTATAA 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 181, 272
PsuI RGATCY 2 cut(s) 7, 88
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 3 cut(s) 7, 88, 207
SchI GAGTC 1 cut(s) 113
SetI ASST 3 cut(s) 75, 237, 276
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 368
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 258
VspI ATTAAT 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 91
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.