RchiOBHm_Chr1g0366241

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002446
Physical Location & Seq
Forward (+)
56871524 .. 56871829
306 bp
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UTR
Exon/CDS
Intron
PRQ59081

Sequence Viewer

Length: 306 bp
ATGGAGATGCTATGGACATGGCTTTTGAGTATCTTCTTCATCTTAACTCTCTTATACCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTATTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGGTCTATGCTTCCATTGGCTCTCCCGCACCTATATTATAACGTCAATTCGTACATGAAGGGGCGGCACTTGGCAGATGTGACTGAGATCGTAACCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

101

Amino Acids

11.96

Weight (kDa)

5.04

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 99 4.9e-32 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AbsI CCTCGAGG 1 cut(s) 92
AciI CCGC 2 cut(s) 230, 268
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AspS9I GGNCC 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 193
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 88
BoxI GACNNNNGTC 1 cut(s) 205
BseMII CTCAG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 2 cut(s) 230, 268
BspCNI CTCAG 1 cut(s) 280
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 288
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 291
BstPAI GACNNNNGTC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 18, 259
CviJI RGCY 3 cut(s) 22, 73, 224
CviKI_1 RGCY 3 cut(s) 22, 73, 224
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 92
FaeI CATG 2 cut(s) 21, 262
FatI CATG 2 cut(s) 17, 258
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
HgaI GACGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 21, 262
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 21, 262
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 1 cut(s) 165
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 283, 295
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 25, 28
MluCI AATT 1 cut(s) 250
MnlI CCTC 2 cut(s) 88, 101
MseI TTAA 1 cut(s) 44
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 21, 262
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 205
PsiI TTATAA 2 cut(s) 194, 243
PspPI GGNCC 1 cut(s) 88
PspXI VCTCGAGB 1 cut(s) 92
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 88
SetI ASST 6 cut(s) 60, 75, 93, 237, 249, 302
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 230, 268
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 28, 111, 275
VpaK11BI GGWCC 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.