pycom04g06930

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002446
Physical Location & Seq
Reverse (-)
7210088 .. 7212391
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06930.4

Sequence Viewer

Length: 438 bp
ATGGGAGATCTCTACGTTTGGCTCATCTCCTTCTTCTTCCTCATTGCCCTGCTCGCCCTTGTTGTTTACCAGTTGATGTGTCTGGCGGATCTTGAGTTCGATTATATCAACCCTTATGACTCTTCAACTCGGATAAACAGAGTGATTTTGCCAGAGTATATCACAGAAGGAGTTTTGTGCACTTTTCTTCTTATAACAGGGCATTGGTGCATGTCACTGTTTTGTGGTCCGTACCTCTATTATAATGTGAAACTGTATATGAGAAAGAATCATCTGGTCGATGTTACCGAGATATTCAATATGCTCCACAAAGAAAAGAAGATACGGCTTTTCAAACTCTTCTATCTTGTTTTCCTCCTGTTTCTCTCAATATTCTGGATGATTCTAACTGCATTGGAAGACCATGAGTCATTGGGGGACAATGGCGGCCTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

146

Amino Acids

17.16

Weight (kDa)

5.44

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AciI CCGC 2 cut(s) 86, 426
AclWI GGATC 1 cut(s) 96
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 3 cut(s) 126, 298, 334
AhdI GACNNNNNGTC 1 cut(s) 406
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
Alw21I GWGCWC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 427
ApaLI GTGCAC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 341
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 182
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 7, 88
BspACI CCGC 2 cut(s) 86, 426
BspANI GGCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 70
BssMI GATC 2 cut(s) 7, 88
Bst4CI ACNGT 2 cut(s) 219, 255
Bst6I CTCTTC 2 cut(s) 127, 344
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 384
BstKTI GATC 2 cut(s) 10, 91
BstMBI GATC 2 cut(s) 7, 88
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 7, 88
BstYI RGATCY 2 cut(s) 7, 88
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 211, 404
CviJI RGCY 3 cut(s) 22, 328, 429
CviKI_1 RGCY 3 cut(s) 22, 328, 429
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 9, 90
DpnII GATC 2 cut(s) 7, 88
DriI GACNNNNNGTC 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 127, 344
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 2 cut(s) 127, 344
EciI GGCGGA 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 227
FaeI CATG 2 cut(s) 214, 407
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 210, 403
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 427
GluI GCNGC 1 cut(s) 427
HaeIII GGCC 1 cut(s) 429
Hin1II CATG 2 cut(s) 214, 407
HinfI GANTC 4 cut(s) 119, 268, 382, 407
Hpy166II GTNNAC 2 cut(s) 67, 180
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 92, 376
Hpy8I GTNNAC 2 cut(s) 67, 180
HpyAV CCTTC 2 cut(s) 40, 161
HpyCH4III ACNGT 2 cut(s) 219, 255
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 180, 210, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 214, 407
Kzo9I GATC 2 cut(s) 7, 88
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 8 cut(s) 62, 68, 83, 165, 183, 260, 361, 371
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 213, 283
MalI GATC 2 cut(s) 9, 90
MboI GATC 2 cut(s) 7, 88
MboII GAAGA 7 cut(s) 25, 28, 114, 179, 331, 331, 410
MflI RGATCY 2 cut(s) 7, 88
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 2 cut(s) 113, 416
MnlI CCTC 3 cut(s) 50, 245, 365
MseI TTAA 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 7, 88
NlaIII CATG 2 cut(s) 214, 407
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 2 cut(s) 268, 382
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 2 cut(s) 113, 415
PpsI GAGTC 2 cut(s) 113, 415
PsiI TTATAA 2 cut(s) 194, 243
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 2 cut(s) 7, 88
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 2 cut(s) 7, 88
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 113, 416
SduI GDGCHC 1 cut(s) 182
SetI ASST 2 cut(s) 18, 237
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 2 cut(s) 86, 426
SspI AATATT 1 cut(s) 372
TaaI ACNGT 2 cut(s) 219, 255
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 99, 279
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 2 cut(s) 268, 382
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 222
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.