MD02G1203900.v1.1

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002446
Physical Location & Seq
Reverse (-)
20368618 .. 20372997
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1203900.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGAGATACTGTGGACATGGCTGCTGAGTTTCTTCTTCATTCTAACTTTGTTATGCATTCTGGGTTATCAGCTTGTGTGCTTGGTGGACCTCGAGTACGACTACATTAACCCATATGATTCATCATCTCGGATAAACAGTGTCATTTTGCCAGAATTTATTGTTCAAGGAGTTTTGTGCTTCATTCTTCTTATAGCGCAACATTGGTTCATGCTTTTCATGGCTCTGCCGCACCTTTATTATAATGTCAATTTGTACATGACGAGACGGCACTTGGTAGATACTGAGATCTATAACCGACTGAGCTGGGAGAAAAAGCAACGCTTTTTTAAGATTGGCTATCTTTTGGCCCTATTCATTCTTTCTTTATTCTGGCATTGTTTTCAACTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

132

Amino Acids

15.93

Weight (kDa)

6.38

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 124 2.9e-39 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AciI CCGC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 2 cut(s) 98, 257
AgsI TTSAA 2 cut(s) 167, 386
AluBI AGCT 2 cut(s) 73, 306
AluI AGCT 2 cut(s) 73, 306
Alw26I GTCTC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 88, 349
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 259
BglII AGATCT 1 cut(s) 288
BisI GCNGC 2 cut(s) 23, 230
BlsI GCNGC 2 cut(s) 24, 231
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 88, 349
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseMII CTCAG 3 cut(s) 17, 276, 293
BseXI GCAGC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 306
BshFI GGCC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 259
BsmBI CGTCTC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 18, 277, 294
BsrGI TGTACA 1 cut(s) 255
BssMI GATC 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 12, 140
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 26, 285, 302
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 88, 349
Csp6I GTAC 2 cut(s) 97, 256
CviAII CATG 4 cut(s) 18, 211, 220, 259
CviJI RGCY 6 cut(s) 22, 73, 224, 306, 339, 350
CviKI_1 RGCY 6 cut(s) 22, 73, 224, 306, 339, 350
CviQI GTAC 2 cut(s) 97, 256
DdeI CTNAG 3 cut(s) 26, 285, 302
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 4 cut(s) 21, 214, 223, 262
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FatI CATG 4 cut(s) 17, 210, 219, 258
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 23, 230
Fsp4HI GCNGC 2 cut(s) 23, 230
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 23, 230
GsaI CCCAGC 1 cut(s) 310
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 1 cut(s) 199
Hin1II CATG 4 cut(s) 21, 214, 223, 262
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 15, 88
Hpy188I TCNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 15, 88
HpyCH4III ACNGT 2 cut(s) 12, 140
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 26, 285, 302
Hsp92II CATG 4 cut(s) 21, 214, 223, 262
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 288
LpnPI CCDG 4 cut(s) 47, 165, 292, 358
Lsp1109I GCAGC 1 cut(s) 9
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 3 cut(s) 25, 28, 179
MflI RGATCY 1 cut(s) 288
MluCI AATT 2 cut(s) 155, 250
MnlI CCTC 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 3 cut(s) 108, 330, 394
Mva1269I GAATGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 288
NlaIII CATG 4 cut(s) 21, 214, 223, 262
NsiI ATGCAT 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 92
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 24, 231
PsiI TTATAA 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 88, 349
PspXI VCTCGAGB 1 cut(s) 92
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 2 cut(s) 98, 257
RsaNI GTAC 2 cut(s) 97, 256
SaqAI TTAA 3 cut(s) 108, 330, 394
SatI GCNGC 2 cut(s) 23, 230
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 2 cut(s) 88, 349
SetI ASST 4 cut(s) 75, 93, 237, 308
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 155, 250
SsiI CCGC 1 cut(s) 230
TaaI ACNGT 2 cut(s) 12, 140
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 155, 250
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 108, 330, 394
Tru9I TTAA 3 cut(s) 108, 330, 394
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 6 cut(s) 28, 111, 172, 199, 208, 346
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.