Rh7BG191300

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002446
Physical Location & Seq
Reverse (-)
15466170 .. 15469408
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG191300.1

Sequence Viewer

Length: 336 bp
ATGTGCTTAGCAGATCTAGAGTTTGATTATATCAACCCTTATGACTCTTCAACACGGATTAACAGAGTGATTTTGCCCGAGTACATCCTAGAAGGACTATTAGGTGCCATCTATCTTGTAACAGGGCATTGGATCATGGCACTATTCTGTGGTCCGTACCTCTATTATAACGTGACACTGTATACGAGTAAAAGGCACCTCGTAGATGTTACTGAGATATTCAATATGCTCCACAAAGAGAAGAAGCAACGACTTTTCAAACTCTTCTATCTTGTTTTCCTTCTCTTTCTCTCAATATTCTGGATGATTCTAACTGCATTGGAAGACCACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

111

Amino Acids

13.28

Weight (kDa)

5.75

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 1 - 100 1.3e-35 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB1I GGYRCC 2 cut(s) 104, 195
AccI GTMKAC 1 cut(s) 182
AclWI GGATC 1 cut(s) 140
AfaI GTAC 2 cut(s) 83, 158
AgsI TTSAA 3 cut(s) 51, 223, 259
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 152
BanI GGYRCC 2 cut(s) 104, 195
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 330
BccI CCATC 1 cut(s) 116
BfaI CTAG 2 cut(s) 17, 89
BglII AGATCT 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 106, 197
BpiI GAAGAC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 7
BseGI GGATG 2 cut(s) 84, 309
BseMII CTCAG 1 cut(s) 204
BshNI GGYRCC 2 cut(s) 104, 195
BsiHKCI CYCGRG 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 2 cut(s) 13, 132
Bsp1720I GCTNAGC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 106, 197
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 2 cut(s) 104, 195
BssMI GATC 2 cut(s) 13, 132
BssNAI GTATAC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 329
Bst1107I GTATAC 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 52, 269
BstDEI CTNAG 2 cut(s) 7, 213
BstF5I GGATG 2 cut(s) 84, 309
BstKTI GATC 2 cut(s) 16, 135
BstMBI GATC 2 cut(s) 13, 132
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BstZ17I GTATAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 84, 309
BtsIMutI CAGTG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 82, 157
CviAII CATG 1 cut(s) 136
CviQI GTAC 2 cut(s) 82, 157
DdeI CTNAG 2 cut(s) 7, 213
DpnI GATC 2 cut(s) 15, 134
DpnII GATC 2 cut(s) 13, 132
Eam1104I CTCTTC 2 cut(s) 52, 269
EarI CTCTTC 2 cut(s) 52, 269
Eco47I GGWCC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 77
FaeI CATG 1 cut(s) 139
FaiI YATR 6 cut(s) 30, 42, 137, 168, 183, 227
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 182
FokI GGATG 2 cut(s) 71, 316
FspBI CTAG 2 cut(s) 17, 89
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 44, 307
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 17, 301
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 86, 290
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 7, 213
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 2 cut(s) 13, 132
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 2 cut(s) 108, 286
MaeI CTAG 2 cut(s) 17, 89
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 118, 172, 208
MalI GATC 2 cut(s) 15, 134
MboI GATC 2 cut(s) 13, 132
MboII GAAGA 4 cut(s) 39, 253, 256, 335
MflI RGATCY 1 cut(s) 13
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 170, 209
MseI TTAA 1 cut(s) 60
NdeII GATC 2 cut(s) 13, 132
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 106, 197
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 307
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 106, 197
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 83, 158
RsaNI GTAC 2 cut(s) 82, 157
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 2 cut(s) 13, 132
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 38
SetI ASST 4 cut(s) 106, 162, 174, 201
SinI GGWCC 1 cut(s) 152
SspI AATATT 1 cut(s) 297
SspMI CTAG 2 cut(s) 17, 89
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 174
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 70, 144
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 152
XbaI TCTAGA 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 2 cut(s) 17, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.