RchiOBHm_Chr3g0492211

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002446
Physical Location & Seq
Forward (+)
38968599 .. 38968793
195 bp
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UTR
Exon/CDS
Intron
PRQ45510

Sequence Viewer

Length: 195 bp
ATGCTTCCATTGGCTCTCCCGCGCCTATATTATAACGTCAATTCGTACATGAAGGGGCGGCACTTGGCAGATGTGATTGAGATCTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGTTGTTTTGGAGCATTGCAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

64

Amino Acids

7.62

Weight (kDa)

9.1

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 3 - 55 1.3e-12 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 99
AccII CGCG 1 cut(s) 22
AciI CCGC 2 cut(s) 20, 58
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AoxI GGCC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 149
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 99
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 59
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 141, 150
BseJI GATNNNNATC 1 cut(s) 80
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 149
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 2 cut(s) 20, 58
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 180
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 141, 150
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 141, 150
BveI ACCTGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 14, 99, 149
CviKI_1 RGCY 3 cut(s) 14, 99, 149
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 28, 33, 50
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 128, 137
Fsp4HI GCNGC 1 cut(s) 59
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 59
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 149
HhaI GCGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 85, 104, 131, 158
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 40
MluNI TGGCCA 1 cut(s) 149
MnlI CCTC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 22
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 60
PsiI TTATAA 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 39, 93, 101
SfaNI GCATC 1 cut(s) 126
Sse9I AATT 1 cut(s) 40
SsiI CCGC 2 cut(s) 20, 58
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 39
TasI AATT 1 cut(s) 40
TauI GCSGC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 65, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.