Prupe.2G146000_v2.0.a1

Protein cornichon homolog 4-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
20244098 .. 20247902
3805 bp
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UTR
Exon/CDS
Intron
Prupe.2G146000.2

Sequence Viewer

Length: 411 bp
ATGGAGATGCTGTGGACATGGCTGTTGAGTTTCTTCTTCATTCTAGCTCTGTTATGCATTCTGGGTTATCAGCTTGTGTGCTTGGTGGACCTCGAATTCGATTACATCAACCCATATGATTCATCATCTCGGATAAACAATGTTATTTTGCCAGAATTTATTATTCAAGGAGTTTTGTGCCTCATTCTTCTTATAGCGCGACATTGGTTTATGCTTTTATTGGCTCTGCCGCACCTATATTACAATGTGAATTTGTACATGACGAGACAACACTTGGTAGATGTGACTGAAATATATAACCAGCTGAGCTGGGAGAAAAAGAAACGGTTTTTCAAGATTGGCTATCTTTTGGTCCTATTCATCCTTTCTCTATTCTGGTTGCTTTGGAGCATTGGAGATGAATATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

16.43

Weight (kDa)

5.21

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 199
AciI CCGC 1 cut(s) 230
AcsI RAATTY 3 cut(s) 95, 155, 250
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 167, 334
AluBI AGCT 4 cut(s) 47, 73, 304, 309
AluI AGCT 4 cut(s) 47, 73, 304, 309
Alw26I GTCTC 1 cut(s) 259
ApoI RAATTY 3 cut(s) 95, 155, 250
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 88, 352
AvaII GGWCC 2 cut(s) 88, 352
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 230
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 88, 352
BmgT120I GGNCC 2 cut(s) 88, 352
Bpu1102I GCTNAGC 1 cut(s) 305
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseGI GGATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 255
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 327
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 259
BstUI CGCG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 360
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 88, 352
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 18, 259
CviJI RGCY 7 cut(s) 22, 47, 73, 224, 304, 309, 342
CviKI_1 RGCY 7 cut(s) 22, 47, 73, 224, 304, 309, 342
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 88, 352
EcoRI GAATTC 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 59
FaeI CATG 2 cut(s) 21, 262
FatI CATG 2 cut(s) 17, 258
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 230
GsaI CCCAGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 199
Hin1II CATG 2 cut(s) 21, 262
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 15, 88
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 2 cut(s) 15, 88
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 2 cut(s) 21, 262
HspAI GCGC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 5 cut(s) 47, 165, 295, 314, 361
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 3 cut(s) 25, 28, 179
MluCI AATT 3 cut(s) 95, 155, 250
MnlI CCTC 2 cut(s) 101, 191
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 57
MvnI CGCG 1 cut(s) 199
NdeI CATATG 1 cut(s) 115
NlaIII CATG 2 cut(s) 21, 262
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 59
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 88, 352
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 2 cut(s) 88, 352
SetI ASST 6 cut(s) 49, 75, 93, 237, 306, 311
SinI GGWCC 2 cut(s) 88, 352
Sse9I AATT 3 cut(s) 95, 155, 250
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 93, 99
TasI AATT 3 cut(s) 95, 155, 250
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 28, 111, 349
VpaK11BI GGWCC 2 cut(s) 88, 352
XapI RAATTY 3 cut(s) 95, 155, 250
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.