AT1G12370

DNA photolyase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4206360 .. 4208999
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12370.2

Sequence Viewer

Length: 1473 bp
ATGGCGTCGACAGTCTCAGTTCAACCGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTTGGATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGATAACTGGGCGTTAATCCACGCCGTTGATCTGGCAAACAGAACCAACGCGCCGGTGGCCGTCGTTTTCAATCTGTTCGATCAATTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGGGTTTGCGTCAGCTTCACCACCAAATCGATTCTCTCCAAATTCCGTTTTTTCTCTTACAGGGAGATGCAAAGGAGACAATCCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTACTGATTTCTCTCCTTTACGGGAAATCCGGCGTTGTAAAGATGAGGTTGTCAAGAGAACGAGTGATTCATTAGCGATACATGAAGTTGATGCTCACAATGTAGTTCCAATGTGGGCTGCTTCGAGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTGATTACCTCATTGAGTTTCCTAAACTTGAGCCGCCGAAGAAGAAATGGACGGGGATGATGGATAAGAAGCTTGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGCAGAAGTTCCTGAAATTGAATGGTGTGTGCCTGGAGAAGATGCAGGGATTGAAGTATTGATGGGGAATAAAGATGGTTTTTTGACGAAGAGGTTGAAGAATTATTCAACTGACCGGAATAATCCTATAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGGTATCAGCTCAGCGTTGTGCCTTGGAGGCGCGTAAAGTCCGGAGTACTTCCCCTCAGGCGGTAGACACATTCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTATTATCAACCTCATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCACTAATGGATCATGCTTCAGATAAGAGGGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACTGACAGCAGATCCTTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGCGAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAGGGACCTGAAGAGGCTCTCTCAATATCCATCTATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTGGGTGCATGTGGTCTATATGTGGCGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTGGGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGATAGTTACATCTCTTATGTCAAGAGTTTGGTGTCAGTAACAAAGAAGAAGAGGAAAGCTGAAGAACAGCTCACCAGAGACTCTGTTGATCCCAAGATAACTATTGTTTAG

Protein Analysis

490

Amino Acids

56.35

Weight (kDa)

9.03

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 30 - 191 1.1e-32 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 829
AccI GTMKAC 2 cut(s) 8, 903
AccII CGCG 3 cut(s) 173, 871, 1337
AccIII TCCGGA 2 cut(s) 36, 879
AciI CCGC 3 cut(s) 581, 899, 1337
AclWI GGATC 8 cut(s) 28, 34, 41, 47, 78, 1029, 1082, 1445
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 2 cut(s) 288, 1352
AcuI CTGAAG 3 cut(s) 1014, 1197, 1443
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 506, 886, 1325
AfiI CCNNNNNNNGG 2 cut(s) 898, 1310
AgsI TTSAA 9 cut(s) 23, 121, 193, 683, 716, 760, 771, 985, 1357
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 8 cut(s) 262, 356, 541, 619, 848, 992, 1421, 1432
AluI AGCT 8 cut(s) 262, 356, 541, 619, 848, 992, 1421, 1432
Alw26I GTCTC 4 cut(s) 19, 317, 818, 1434
AlwI GGATC 8 cut(s) 28, 34, 41, 47, 78, 1029, 1082, 1445
Ama87I CYCGRG 1 cut(s) 1237
Aor13HI TCCGGA 2 cut(s) 36, 879
AoxI GGCC 2 cut(s) 180, 1301
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 288, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AspLEI GCGC 2 cut(s) 175, 871
AspS9I GGNCC 3 cut(s) 83, 1164, 1172
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 257, 1426
AvaI CYCGRG 1 cut(s) 1237
AvaII GGWCC 3 cut(s) 83, 1164, 1172
AxyI CCTNAGG 1 cut(s) 894
BaeGI GKGCMC 1 cut(s) 1006
BamHI GGATCC 2 cut(s) 33, 39
BarI GAAGNNNNNNTAC 2 cut(s) 1307, 1339
BbvI GCAGC 1 cut(s) 472
BccI CCATC 7 cut(s) 601, 718, 731, 1093, 1205, 1220, 1284
BceAI ACGGC 2 cut(s) 131, 167
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 1282
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 4 cut(s) 19, 317, 818, 1434
BfaI CTAG 2 cut(s) 513, 1157
BfuAI ACCTGC 1 cut(s) 829
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 2 cut(s) 486, 581
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 2 cut(s) 487, 582
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 2 cut(s) 27, 696
Bme18I GGWCC 3 cut(s) 83, 1164, 1172
BmeT110I CYCGRG 1 cut(s) 1237
BmgT120I GGNCC 3 cut(s) 83, 1164, 1172
BmiI GGNNCC 5 cut(s) 35, 41, 84, 85, 1173
BmrFI CCNGG 2 cut(s) 27, 696
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 3 cut(s) 304, 448, 694
BmuI ACTGGG 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 1172, 1204
BpmI CTGGAG 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 861, 1167
BsaWI WCCGGW 3 cut(s) 36, 777, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 898, 1310
Bse118I RCCGGY 2 cut(s) 175, 1303
Bse1I ACTGG 2 cut(s) 101, 134
Bse21I CCTNAGG 1 cut(s) 894
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 2 cut(s) 36, 879
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 861, 1167
BseGI GGATG 3 cut(s) 105, 609, 1295
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 898, 1310
BseMII CTCAG 3 cut(s) 30, 863, 908
BseNI ACTGG 2 cut(s) 101, 134
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 3 cut(s) 173, 871, 1337
BshFI GGCC 2 cut(s) 182, 1303
BshVI ATCGAT 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 1237
BsiSI CCGG 7 cut(s) 26, 37, 176, 397, 778, 880, 1304
BslFI GGGAC 3 cut(s) 69, 1089, 1185
BslI CCNNNNNNNGG 2 cut(s) 898, 1310
BsmAI GTCTC 4 cut(s) 19, 317, 818, 1434
BsmFI GGGAC 3 cut(s) 69, 1089, 1185
BsnI GGCC 2 cut(s) 182, 1303
Bso31I GGTCTC 1 cut(s) 818
BsoBI CYCGRG 1 cut(s) 1237
Bsp1286I GDGCHC 1 cut(s) 1006
Bsp13I TCCGGA 2 cut(s) 36, 879
Bsp1720I GCTNAGC 1 cut(s) 849
BspACI CCGC 3 cut(s) 581, 899, 1337
BspANI GGCC 2 cut(s) 182, 1303
BspCNI CTCAG 3 cut(s) 29, 862, 907
BspDI ATCGAT 1 cut(s) 276
BspEI TCCGGA 2 cut(s) 36, 879
BspFNI CGCG 3 cut(s) 173, 871, 1337
BspHI TCATGA 1 cut(s) 1279
BspLI GGNNCC 5 cut(s) 35, 41, 84, 85, 1173
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 8 cut(s) 28, 34, 41, 47, 78, 1029, 1082, 1445
BspTNI GGTCTC 1 cut(s) 818
BsrFI RCCGGY 2 cut(s) 175, 1303
BsrI ACTGG 2 cut(s) 101, 134
BssAI RCCGGY 2 cut(s) 175, 1303
BssECI CCNNGG 2 cut(s) 861, 1167
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 861, 1167
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 7 cut(s) 13, 66, 79, 117, 509, 1124, 1323
Bst6I CTCTTC 4 cut(s) 746, 928, 1173, 1406
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 1006
BstDEI CTNAG 3 cut(s) 16, 849, 894
BstF5I GGATG 3 cut(s) 105, 609, 1295
BstFNI CGCG 3 cut(s) 173, 871, 1337
BstHHI GCGC 2 cut(s) 175, 871
BstMAI GTCTC 4 cut(s) 19, 317, 818, 1434
BstMWI GCNNNNNNNGC 2 cut(s) 179, 866
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 1261
BstSCI CCNGG 2 cut(s) 25, 694
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 3 cut(s) 173, 871, 1337
BstV1I GCAGC 1 cut(s) 472
BstX2I RGATCY 3 cut(s) 33, 39, 1087
BstYI RGATCY 3 cut(s) 33, 39, 1087
Bsu15I ATCGAT 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 2 cut(s) 182, 1303
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 3 cut(s) 105, 609, 1295
BtsIMutI CAGTG 1 cut(s) 514
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 1 cut(s) 1006
CciI TCATGA 1 cut(s) 1279
CfoI GCGC 2 cut(s) 175, 871
Cfr10I RCCGGY 2 cut(s) 175, 1303
Cfr13I GGNCC 3 cut(s) 83, 1164, 1172
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 2 cut(s) 224, 245
Csp6I GTAC 3 cut(s) 505, 885, 1324
CviAII CATG 7 cut(s) 57, 449, 1025, 1129, 1258, 1280, 1327
CviQI GTAC 3 cut(s) 505, 885, 1324
DdeI CTNAG 3 cut(s) 16, 849, 894
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 4 cut(s) 746, 928, 1173, 1406
EarI CTCTTC 4 cut(s) 746, 928, 1173, 1406
Eco130I CCWWGG 2 cut(s) 861, 1167
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 3 cut(s) 83, 1164, 1172
Eco57I CTGAAG 3 cut(s) 1014, 1197, 1443
Eco81I CCTNAGG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 1237
EcoO109I RGGNCCY 2 cut(s) 83, 1172
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 861, 1167
ErhI CCWWGG 2 cut(s) 861, 1167
FaeI CATG 7 cut(s) 60, 452, 1028, 1132, 1261, 1283, 1330
FaqI GGGAC 3 cut(s) 69, 1089, 1185
FatI CATG 7 cut(s) 56, 448, 1024, 1128, 1257, 1279, 1326
FauI CCCGC 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 1282
FblI GTMKAC 2 cut(s) 8, 903
Fnu4HI GCNGC 2 cut(s) 486, 581
FokI GGATG 3 cut(s) 112, 616, 1302
Fsp4HI GCNGC 2 cut(s) 486, 581
FspBI CTAG 2 cut(s) 513, 1157
GlaI GCGC 2 cut(s) 174, 870
GluI GCNGC 2 cut(s) 486, 581
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 2 cut(s) 182, 1303
HapII CCGG 7 cut(s) 26, 37, 176, 397, 778, 880, 1304
HgaI GACGC 2 cut(s) 224, 245
HhaI GCGC 2 cut(s) 175, 871
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 60, 452, 1028, 1132, 1261, 1283, 1330
Hin6I GCGC 2 cut(s) 173, 869
HinP1I GCGC 2 cut(s) 173, 869
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 5 cut(s) 278, 434, 977, 1153, 1442
HpaII CCGG 7 cut(s) 26, 37, 176, 397, 778, 880, 1304
HphI GGTGA 2 cut(s) 257, 1426
Hpy166II GTNNAC 3 cut(s) 9, 94, 904
Hpy188I TCNGA 4 cut(s) 33, 107, 946, 1033
Hpy188III TCNNGA 9 cut(s) 37, 212, 421, 674, 880, 1157, 1232, 1280, 1384
Hpy8I GTNNAC 3 cut(s) 9, 94, 904
Hpy99I CGWCG 3 cut(s) 10, 92, 188
HpyAV CCTTC 2 cut(s) 979, 1066
HpyCH4III ACNGT 7 cut(s) 13, 66, 79, 117, 509, 1124, 1323
HpyCH4V TGCA 6 cut(s) 317, 665, 707, 1120, 1257, 1344
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 866
HpyF3I CTNAG 3 cut(s) 16, 849, 894
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 60, 452, 1028, 1132, 1261, 1283, 1330
HspAI GCGC 2 cut(s) 173, 869
KflI GGGWCCC 1 cut(s) 83
Kpn2I TCCGGA 2 cut(s) 36, 879
Ksp22I TGATCA 1 cut(s) 1282
LmnI GCTCC 3 cut(s) 353, 989, 1060
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 3 cut(s) 304, 448, 694
MaeI CTAG 2 cut(s) 513, 1157
MaeIII GTNAC 5 cut(s) 367, 1011, 1232, 1367, 1399
MflI RGATCY 3 cut(s) 33, 39, 1087
MhlI GDGCHC 1 cut(s) 1006
MlyI GAGTC 1 cut(s) 1436
MmeI TCCRAC 4 cut(s) 11, 48, 969, 1038
MroI TCCGGA 2 cut(s) 36, 879
MseI TTAA 2 cut(s) 137, 245
MslI CAYNNNNRTG 1 cut(s) 1133
MspI CCGG 7 cut(s) 26, 37, 176, 397, 778, 880, 1304
MspR9I CCNGG 2 cut(s) 27, 696
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 3 cut(s) 173, 871, 1337
MwoI GCNNNNNNNGC 2 cut(s) 179, 866
NciI CCSGG 1 cut(s) 27
NlaIII CATG 7 cut(s) 60, 452, 1028, 1132, 1261, 1283, 1330
NlaIV GGNNCC 5 cut(s) 35, 41, 84, 85, 1173
NmuCI GTSAC 2 cut(s) 1011, 1232
NspI RCATGY 1 cut(s) 1261
PagI TCATGA 1 cut(s) 1279
PfeI GAWTC 4 cut(s) 278, 434, 977, 1153
PkrI GCNGC 2 cut(s) 487, 582
PleI GAGTC 1 cut(s) 1436
PpsI GAGTC 1 cut(s) 1436
PpuMI RGGWCCY 2 cut(s) 83, 1172
Psp5II RGGWCCY 2 cut(s) 83, 1172
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 5 cut(s) 35, 41, 84, 85, 1173
PspPI GGNCC 3 cut(s) 83, 1164, 1172
PspPPI RGGWCCY 2 cut(s) 83, 1172
PsuI RGATCY 3 cut(s) 33, 39, 1087
RsaI GTAC 3 cut(s) 506, 886, 1325
RsaNI GTAC 3 cut(s) 505, 885, 1324
RseI CAYNNNNRTG 1 cut(s) 1133
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 137, 245
SatI GCNGC 2 cut(s) 486, 581
Sau96I GGNCC 3 cut(s) 83, 1164, 1172
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 1 cut(s) 1436
ScrFI CCNGG 2 cut(s) 27, 696
SduI GDGCHC 1 cut(s) 1006
SfaNI GCATC 3 cut(s) 304, 448, 694
SgrAI CRCCGGYG 1 cut(s) 175
SinI GGWCC 3 cut(s) 83, 1164, 1172
SmiMI CAYNNNNRTG 1 cut(s) 1133
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SsiI CCGC 3 cut(s) 581, 899, 1337
SspMI CTAG 2 cut(s) 513, 1157
StyD4I CCNGG 2 cut(s) 25, 694
StyI CCWWGG 2 cut(s) 861, 1167
TaaI ACNGT 7 cut(s) 13, 66, 79, 117, 509, 1124, 1323
TaqI TCGA 4 cut(s) 8, 201, 276, 491
TatI WGTACW 2 cut(s) 504, 884
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 4 cut(s) 278, 434, 977, 1153
Tru1I TTAA 2 cut(s) 137, 245
Tru9I TTAA 2 cut(s) 137, 245
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 1011, 1232
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 2 cut(s) 1011, 1232
TspDTI ATGAA 5 cut(s) 426, 465, 1117, 1268, 1343
TspGWI ACGGA 2 cut(s) 282, 1363
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 83, 1164, 1172
XapI RAATTY 2 cut(s) 288, 1352
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 1 cut(s) 1261
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 8, 903
XspI CTAG 2 cut(s) 513, 1157
ZrmI AGTACT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.