Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001384

Physical Location & Seq

Genomic Coordinates Forward (+)

4750437 .. 4756285

Gene Structure 5849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGGAGGTTCGCGGAACCAAGTGAACAAGGCTCACAAGACGCGGTTTTCGTCCAAGTCGTCGCGGAACCTGCACAAAACTTCAGATAAGAGTAGGATCGGTAAATCGGAGCACAATGTTGCAAAGGGAGCTCGGGCGGCTCGAATTCAGAGAAATAAGATGGTACGGGAGCAGAAGCGGGCTGCTCTTTTGAAAGAGAAGAGAGCTTCCAGTGGATCAGCAAGTCCTCCCCGTGTGATTGTTCTATTCGGGCTTTCGGCGGATGTAAAGCTCAGTTCTCTTTCTGAGGATATTCTTTCTTTGCTGTCTCCACAGGGCTATGGAGGTGCTTTGCCTACTGTCGCTTCTCCGGAGTACAGGCTGAGAGCAACGGTACTGCAAGCACCTCATGGGGATTTGCAATCATGTTTGGAAATGGCTAAGGTCGCTGATCTCATTGCTTTTGTGGCTTCAGCAACCTCTTCGTGTGAAGGAGAGTCTGACTACATTGACTCATTTGGTAGTCAATGTCTTTCTGTGTTTAGGTCTCTTGGTTTACCAAGCACCGTCGTGCTAATACGTGATCTACCTACTGAGGCGAAAAGAAGACATGAGTCAAAGAAAACATGTAGTTCTAGTCTTGCTTCTGAATTTCCTGAAGATTGTAAATTTTTTCCAGCTGATACAAAGGACGAGTTGCACAAGTTCATGTGGCTTTTTAAAGAGCAAAGGCTCTCAGTTCCTCACTGGCGAAGTCAGCGACCTTACCTGATGGCTCAAAAGGTTGAAATGGTAGAAGATGATATGAATCCGGGAACAAGTACCCTTCTCCTCACTGGATATGTGCGAGCTTGCAGTCTTTCTGTTAATCAACTGGTTCATGTTTCTGGTGCCGGGGATTTCCAGTTGTGCAAAATGGAAATTCTTAAGGATCCACGTCCTTTGAATGCAAGAAAAGAGCAGGATGTCATGGATGCAGATGAAGTGGATGATGTTGTGGTTCGTTCTTTGGTTCCTGATCCGCTGAAGCAGGAGGCTTTACTTGTTGAGAATGTTCCTGATTCCCTTGATAATGAACAGACATGGCCAACAGAAGAAGAAATGGCAGATGCTGAAAAAAACCAAAACCAAAAAAAGAGGAGAAAAAAGATTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTATCAATGATACAGATGAAGAGGAGTCCGGTACTGATGAAGAAGTGGATGATATGGTAATGGATGAAACAGAGAGTGGTCATCCTGGTGAAGAGGGCAATCATTCAGATCTCAGTGACGATCAAGCTTCTTTAGACTTGAGGGACTCTGACAAAGAAACTGATGCTGATTCAGTGATGATGGACGGTGAAAATTTGACCAAGGAACAGTTGGAGGATGAGATAAAAAAAATAAAGGAAGCCCATGCTGATGATGAGGAATTTCCAGATGAAGTGGATACACCATTAGACTTTCCAGCTAGAAAACGTTTTGCTAAGTATAGAGGCCTCAAGTCCTTTAGGACCTCTTCATGGGATCCCAAAGAGTCTCTACCTCTAGAATATGCTAGAATCTTTGCCTTCGACAATTTCAACAGGACACAGAAAAGCATCCTTGCTAAAGCTTTAGCTATGGAGCAAGAAAACAAGGAGGACTGTGCAACAGCTAGCACATATGCAAGGCTGTATATCAAAGAAGTGCCAACTACTGTTGCTTCTAAATTATGTATGCGTGCAAATACTATGCCTATCATAGCATGTGGCCTTTTGCAGCATGAGTCCAAGATGTCTGTACTCCATTTCAGCTTAAAAAAGCATGACACTTACAGTGATCCTATCAAAACCAAAGATGAATTAATTTTTCATGTTGGCTTTCGCCAATTTGTTGCTAGGCCAATATTCTCTACCGATAACATGAGTTCAGACAAGCACAAAATGGAGAGGTTCCTTCATCCAGGACGTTTTTCCATGGCGTCAATTTATGCTCCTATTACTTTTCCGGCTCTTCCTTTGATAGCTTTCAAGAGTTCTAAAGGGGAGGCCACTGCACCTACAGTTGCTGCTGTTGGTTCTCTGAGAAGCATTGATCCTGACAGGATTATTCTAAAGAAGATCATTTTAACAGGTTATCCTCAACGAGTTTCGAAAAAGAAAGCTGCTGTGAGGTATATGTTCCATAATCCAGAGGATGTGAGATGGTTCAAGCCTGTGGAAGTGTGGACCAAATGTGGGCGTCGGGGTCGCATCAAGGAGCCTGTTGGTACACATGGGGCAATGAAATGCATCCTTAACGGCACCCTCCAGCAGAACGACACCATATGCATGAGCTTGTACAAGCGCGCATATCCCAAGTGGCCTGACCACCGTTTTCCGATTCTTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

790

Amino Acids

88.89

Weight (kDa)

6.73

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tsr1_G-like	PF22298	119 - 223	3.5e-06	Tsr1, G-like domain
AARP2CN	PF08142	241 - 305	4.6e-21	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	481 - 778	7.1e-114	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12380 AT1G62870
fragaria_vesca	FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_7g28141
malus_domestica	MD01G1185300.v1.1 MD04G1078600.v1.1 MD07G1257500.v1.1
prunus_persica	Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.5G080400_v2.0.a1 Prupe.5G080400_v2.0.a1 Prupe.5G080400_v2.0.a1
pyrus_communis	pycom01g19690 pycom04g07040 pycom06g05190 pycom07g23050
rosa_chinensis	RchiOBHm_Chr1g0375071 RchiOBHm_Chr7g0201331
rosa_laevigata	RLG00000003680 RLG00000026690
rosa_multiflora	Rmu_sc0003776.1_g000009 Rmu_sc0012376.1_g000005
rosa_roxburghii	Rroxscaffold_3G00255360 Rroxscaffold_4G00283040 Rroxscaffold_7G00158650
rosa_rugosa	Rorug01G0387900 Rorug01G0388000 Rorug01G0388100 Rorug02G0295300 Rorug07G0062500 Rorug07G0062500 Rorug07G0062600
rosa_samantha	Rh1AG398600 Rh1BG365900 Rh1CG378800 Rh1DG396600 Rh3DG331000 Rh7AG189900 Rh7BG192400 Rh7CG200700 Rh7DG194800
rosa_wichuraiana	Rw1G035390 Rw7G016670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1137
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	869, 2279
AccII	CGCG	4 cut(s)	13, 43, 64, 2325
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
AclI	AACGTT	1 cut(s)	1474
AclWI	GGATC	9 cut(s)	104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	6 cut(s)	144, 629, 647, 900, 1360, 1427
AcuI	CTGAAG	5 cut(s)	66, 435, 657, 1025, 1131
AcyI	GRCGYC	2 cut(s)	1958, 2218
AfaI	GTAC	8 cut(s)	165, 356, 375, 802, 1201, 1779, 2248, 2318
AfiI	CCNNNNNNNGG	2 cut(s)	1518, 2214
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	6 cut(s)	193, 767, 925, 1579, 2008, 2188
AjiI	CACGTC	1 cut(s)	917
AjnI	CCWGG	3 cut(s)	1155, 1252, 1939
AleI	CACNNNNGTG	1 cut(s)	548
Alw21I	GWGCWC	2 cut(s)	114, 133
Alw26I	GTCTC	3 cut(s)	312, 531, 1539
AlwI	GGATC	9 cut(s)	104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
AlwNI	CAGNNNCTG	2 cut(s)	1091, 2045
Ama87I	CYCGRG	2 cut(s)	132, 1137
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	6 cut(s)	1064, 1492, 1747, 1877, 2025, 2339
ApeKI	GCWGC	5 cut(s)	182, 1160, 1756, 2045, 2141
ApoI	RAATTY	6 cut(s)	144, 629, 647, 900, 1360, 1427
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AseI	ATTAAT	1 cut(s)	1841
AspLEI	GCGC	2 cut(s)	2325, 2327
AspS9I	GGNCC	2 cut(s)	1509, 2205
AsuC2I	CCSGG	2 cut(s)	792, 874
AsuHPI	GGTGA	2 cut(s)	1268, 1367
AsuII	TTCGAA	1 cut(s)	2129
AsuNHI	GCTAGC	1 cut(s)	1652
AvaI	CYCGRG	2 cut(s)	132, 1137
AvaII	GGWCC	2 cut(s)	1509, 2205
BalI	TGGCCA	1 cut(s)	1066
BamHI	GGATCC	2 cut(s)	910, 1522
BanI	GGYRCC	2 cut(s)	869, 2279
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	114, 133
BbvI	GCAGC	5 cut(s)	169, 1147, 1768, 2032, 2128
BccI	CCATC	4 cut(s)	154, 745, 1342, 2175
BceAI	ACGGC	1 cut(s)	2293
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	3 cut(s)	1157, 1254, 1941
BciVI	GTATCC	1 cut(s)	1438
BcnI	CCSGG	2 cut(s)	792, 874
BcoDI	GTCTC	3 cut(s)	312, 531, 1539
BfaI	CTAG	6 cut(s)	615, 1467, 1544, 1554, 1653, 1875
BfmI	CTRYAG	1 cut(s)	2037
BfrI	CTTAAG	1 cut(s)	905
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	1438
BglII	AGATCT	1 cut(s)	1276
BisI	GCNGC	6 cut(s)	138, 183, 1161, 1757, 2046, 2142
BlsI	GCNGC	6 cut(s)	139, 184, 1162, 1758, 2047, 2143
Bme1390I	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
Bme18I	GGWCC	2 cut(s)	1509, 2205
BmeT110I	CYCGRG	2 cut(s)	132, 1137
BmgBI	CACGTC	1 cut(s)	917
BmgT120I	GGNCC	2 cut(s)	1509, 2205
BmiI	GGNNCC	9 cut(s)	17, 68, 871, 912, 993, 1524, 1931, 2238, 2281
BmrFI	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
BmsI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
BmtI	GCTAGC	1 cut(s)	1656
BoxI	GACNNNNGTC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	592
BpmI	CTGGAG	1 cut(s)	2270
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	2129
BpuEI	CTTGAG	2 cut(s)	1327, 1481
BpuMI	CCSGG	2 cut(s)	792, 874
BsaAI	YACGTR	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	1958, 2218
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	873, 1368, 1953
BsaWI	WCCGGW	2 cut(s)	349, 1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	1518, 2214
Bse1I	ACTGG	5 cut(s)	210, 731, 820, 858, 883
Bse3DI	GCAATG	2 cut(s)	435, 2265
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	1157, 1254, 1941
BseDI	CCNNGG	3 cut(s)	873, 1368, 1953
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	1518, 2214
BseMI	GCAATG	2 cut(s)	435, 2265
BseMII	CTCAG	7 cut(s)	276, 286, 353, 564, 729, 1294, 2051
BseNI	ACTGG	5 cut(s)	210, 731, 820, 858, 883
BsePI	GCGCGC	1 cut(s)	2323
BseRI	GAGGAG	3 cut(s)	800, 1132, 1205
BseXI	GCAGC	5 cut(s)	169, 1147, 1768, 2032, 2128
BsgI	GTGCAG	2 cut(s)	56, 2016
Bsh1236I	CGCG	4 cut(s)	13, 43, 64, 2325
BshFI	GGCC	6 cut(s)	1066, 1494, 1749, 1879, 2027, 2341
BshNI	GGYRCC	2 cut(s)	869, 2279
BsiHKAI	GWGCWC	2 cut(s)	114, 133
BsiHKCI	CYCGRG	2 cut(s)	132, 1137
BsiSI	CCGG	5 cut(s)	350, 791, 873, 1197, 1985
BslFI	GGGAC	1 cut(s)	1325
BslI	CCNNNNNNNGG	2 cut(s)	1518, 2214
BsmAI	GTCTC	3 cut(s)	312, 531, 1539
BsmFI	GGGAC	1 cut(s)	1325
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	6 cut(s)	1066, 1494, 1749, 1879, 2027, 2341
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	2 cut(s)	132, 1137
Bsp119I	TTCGAA	1 cut(s)	2129
Bsp1286I	GDGCHC	2 cut(s)	114, 133
Bsp13I	TCCGGA	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	2316
Bsp19I	CCATGG	1 cut(s)	1953
BspACI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
BspANI	GGCC	6 cut(s)	1066, 1494, 1749, 1879, 2027, 2341
BspCNI	CTCAG	7 cut(s)	277, 285, 354, 565, 728, 1293, 2052
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	4 cut(s)	13, 43, 64, 2325
BspLI	GGNNCC	9 cut(s)	17, 68, 871, 912, 993, 1524, 1931, 2238, 2281
BspMI	ACCTGC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	1656
BspPI	GGATC	9 cut(s)	104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
BspQI	GCTCTTC	1 cut(s)	1995
BspT104I	TTCGAA	1 cut(s)	2129
BspT107I	GGYRCC	2 cut(s)	869, 2279
BspTI	CTTAAG	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	435, 2265
BsrGI	TGTACA	1 cut(s)	2316
BsrI	ACTGG	5 cut(s)	210, 731, 820, 858, 883
BssECI	CCNNGG	3 cut(s)	873, 1368, 1953
BssHII	GCGCGC	1 cut(s)	2323
BssNI	GRCGYC	2 cut(s)	1958, 2218
BssT1I	CCWWGG	2 cut(s)	1368, 1953
Bst2UI	CCWGG	3 cut(s)	1157, 1254, 1941
Bst6I	CTCTTC	6 cut(s)	194, 466, 1182, 1254, 1519, 1995
BstACI	GRCGYC	2 cut(s)	1958, 2218
BstAFI	CTTAAG	1 cut(s)	905
BstAUI	TGTACA	1 cut(s)	2316
BstBAI	YACGTR	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	2129
BstC8I	GCNNGC	7 cut(s)	180, 381, 828, 832, 1654, 1719, 2325
BstDEI	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1280, 1482, 2060
BstDSI	CCRYGG	1 cut(s)	1953
BstFNI	CGCG	4 cut(s)	13, 43, 64, 2325
BstHHI	GCGC	2 cut(s)	2325, 2327
BstMAI	GTCTC	3 cut(s)	312, 531, 1539
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 128, 137, 425, 446, 736
BstNI	CCWGG	3 cut(s)	1157, 1254, 1941
BstNSI	RCATGY	2 cut(s)	609, 1746
BstPAI	GACNNNNGTC	1 cut(s)	592
BstSCI	CCNGG	5 cut(s)	790, 872, 1155, 1252, 1939
BstSFI	CTRYAG	1 cut(s)	2037
BstUI	CGCG	4 cut(s)	13, 43, 64, 2325
BstV1I	GCAGC	5 cut(s)	169, 1147, 1768, 2032, 2128
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	3 cut(s)	910, 1276, 1522
BstYI	RGATCY	3 cut(s)	910, 1276, 1522
BsuI	GTATCC	1 cut(s)	1438
BsuRI	GGCC	6 cut(s)	1066, 1494, 1749, 1879, 2027, 2341
BtgI	CCRYGG	1 cut(s)	1953
BtrI	CACGTC	1 cut(s)	917
BtsI	GCAGTG	1 cut(s)	2028
BtsIMutI	CAGTG	7 cut(s)	217, 724, 813, 1288, 1347, 1819, 2028
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	7 cut(s)	180, 381, 828, 832, 1654, 1719, 2325
CaiI	CAGNNNCTG	2 cut(s)	1091, 2045
CfoI	GCGC	2 cut(s)	2325, 2327
Cfr13I	GGNCC	2 cut(s)	1509, 2205
CseI	GACGC	3 cut(s)	49, 1947, 2207
Csp6I	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviQI	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
DdeI	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1280, 1482, 2060
DraI	TTTAAA	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	6 cut(s)	194, 466, 1182, 1254, 1519, 1995
EarI	CTCTTC	6 cut(s)	194, 466, 1182, 1254, 1519, 1995
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	1368, 1953
Eco147I	AGGCCT	1 cut(s)	1494
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	1509, 2205
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	5 cut(s)	66, 435, 657, 1025, 1131
Eco88I	CYCGRG	2 cut(s)	132, 1137
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	1509
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	1155, 1252, 1939
EcoT14I	CCWWGG	2 cut(s)	1368, 1953
EcoT22I	ATGCAT	2 cut(s)	2270, 2309
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	2 cut(s)	1368, 1953
FaqI	GGGAC	1 cut(s)	1325
FauI	CCCGC	1 cut(s)	171
FauNDI	CATATG	2 cut(s)	1660, 2303
Fnu4HI	GCNGC	6 cut(s)	138, 183, 1161, 1757, 2046, 2142
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	6 cut(s)	138, 183, 1161, 1757, 2046, 2142
FspBI	CTAG	6 cut(s)	615, 1467, 1544, 1554, 1653, 1875
GlaI	GCGC	2 cut(s)	2324, 2326
GluI	GCNGC	6 cut(s)	138, 183, 1161, 1757, 2046, 2142
GsuI	CTGGAG	1 cut(s)	2270
HaeIII	GGCC	6 cut(s)	1066, 1494, 1749, 1879, 2027, 2341
HapII	CCGG	5 cut(s)	350, 791, 873, 1197, 1985
HgaI	GACGC	3 cut(s)	49, 1947, 2207
HhaI	GCGC	2 cut(s)	2325, 2327
Hin1I	GRCGYC	2 cut(s)	1958, 2218
Hin6I	GCGC	2 cut(s)	2323, 2325
HinP1I	GCGC	2 cut(s)	2323, 2325
HindIII	AAGCTT	2 cut(s)	1293, 1608
HpaII	CCGG	5 cut(s)	350, 791, 873, 1197, 1985
HphI	GGTGA	2 cut(s)	1268, 1367
Hpy166II	GTNNAC	4 cut(s)	25, 536, 2205, 2249
Hpy8I	GTNNAC	4 cut(s)	25, 536, 2205, 2249
Hpy99I	CGWCG	3 cut(s)	64, 551, 2223
HpyAV	CCTTC	4 cut(s)	464, 815, 1576, 1943
HpyCH4IV	ACGT	4 cut(s)	559, 916, 1474, 1945
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 128, 137, 425, 446, 736
HpyF3I	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1280, 1482, 2060
HpySE526I	ACGT	4 cut(s)	559, 916, 1474, 1945
Hsp92I	GRCGYC	2 cut(s)	1958, 2218
HspAI	GCGC	2 cut(s)	2323, 2325
Kpn2I	TCCGGA	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	1995
LmnI	GCTCC	6 cut(s)	109, 128, 169, 1621, 1975, 2236
Lsp1109I	GCAGC	5 cut(s)	169, 1147, 1768, 2032, 2128
LweI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
MaeI	CTAG	6 cut(s)	615, 1467, 1544, 1554, 1653, 1875
MaeII	ACGT	4 cut(s)	559, 916, 1474, 1945
MaeIII	GTNAC	1 cut(s)	1283
MflI	RGATCY	3 cut(s)	910, 1276, 1522
MhlI	GDGCHC	2 cut(s)	114, 133
MlsI	TGGCCA	1 cut(s)	1066
MluNI	TGGCCA	1 cut(s)	1066
MlyI	GAGTC	7 cut(s)	485, 485, 602, 1202, 1307, 1541, 1772
MmeI	TCCRAC	1 cut(s)	1359
Mox20I	TGGCCA	1 cut(s)	1066
Mph1103I	ATGCAT	2 cut(s)	2270, 2309
MroI	TCCGGA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	7 cut(s)	699, 846, 906, 1793, 1841, 2105, 2274
MslI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
Msp20I	TGGCCA	1 cut(s)	1066
MspA1I	CMGCKG	2 cut(s)	659, 1003
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	5 cut(s)	350, 791, 873, 1197, 1985
MspR9I	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	1157, 1254, 1941
MvnI	CGCG	4 cut(s)	13, 43, 64, 2325
MwoI	GCNNNNNNNGC	6 cut(s)	70, 128, 137, 425, 446, 736
NciI	CCSGG	2 cut(s)	792, 874
NcoI	CCATGG	1 cut(s)	1953
NdeI	CATATG	2 cut(s)	1660, 2303
NheI	GCTAGC	1 cut(s)	1652
NlaIV	GGNNCC	9 cut(s)	17, 68, 871, 912, 993, 1524, 1931, 2238, 2281
NmuCI	GTSAC	1 cut(s)	1283
NsiI	ATGCAT	2 cut(s)	2270, 2309
NspI	RCATGY	2 cut(s)	609, 1746
NspV	TTCGAA	1 cut(s)	2129
OliI	CACNNNNGTG	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	1137
PauI	GCGCGC	1 cut(s)	2323
PceI	AGGCCT	1 cut(s)	1494
PciI	ACATGT	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	1995
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 56, 139
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	6 cut(s)	787, 1040, 1129, 1337, 1557, 2359
PfoI	TCCNGGA	2 cut(s)	790, 1939
PkrI	GCNGC	6 cut(s)	139, 184, 1162, 1758, 2047, 2143
PleI	GAGTC	7 cut(s)	484, 485, 601, 1201, 1307, 1540, 1771
PpsI	GAGTC	7 cut(s)	484, 485, 601, 1201, 1307, 1540, 1771
Ppu21I	YACGTR	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	1509
PscI	ACATGT	1 cut(s)	605
PshAI	GACNNNNGTC	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	1841
Psp124BI	GAGCTC	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	1474
Psp5II	RGGWCCY	1 cut(s)	1509
Psp6I	CCWGG	3 cut(s)	1155, 1252, 1939
PspGI	CCWGG	3 cut(s)	1155, 1252, 1939
PspN4I	GGNNCC	9 cut(s)	17, 68, 871, 912, 993, 1524, 1931, 2238, 2281
PspPI	GGNCC	2 cut(s)	1509, 2205
PspPPI	RGGWCCY	1 cut(s)	1509
PspXI	VCTCGAGB	1 cut(s)	1137
PstNI	CAGNNNCTG	2 cut(s)	1091, 2045
PsuI	RGATCY	3 cut(s)	910, 1276, 1522
PteI	GCGCGC	1 cut(s)	2323
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	8 cut(s)	165, 356, 375, 802, 1201, 1779, 2248, 2318
RsaNI	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
RseI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
SacI	GAGCTC	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	1995
SaqAI	TTAA	7 cut(s)	699, 846, 906, 1793, 1841, 2105, 2274
SatI	GCNGC	6 cut(s)	138, 183, 1161, 1757, 2046, 2142
Sau96I	GGNCC	2 cut(s)	1509, 2205
SchI	GAGTC	7 cut(s)	485, 485, 602, 1202, 1307, 1541, 1772
ScrFI	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
SduI	GDGCHC	2 cut(s)	114, 133
SfaNI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
SfcI	CTRYAG	1 cut(s)	2037
Sfr274I	CTCGAG	1 cut(s)	1137
SfuI	TTCGAA	1 cut(s)	2129
SinI	GGWCC	2 cut(s)	1509, 2205
SlaI	CTCGAG	1 cut(s)	1137
SmiMI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
SmlI	CTYRAG	4 cut(s)	905, 1137, 1306, 1496
SmoI	CTYRAG	4 cut(s)	905, 1137, 1306, 1496
SseBI	AGGCCT	1 cut(s)	1494
SsiI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
SspI	AATATT	1 cut(s)	1884
SspMI	CTAG	6 cut(s)	615, 1467, 1544, 1554, 1653, 1875
SstI	GAGCTC	1 cut(s)	133
StuI	AGGCCT	1 cut(s)	1494
StyD4I	CCNGG	5 cut(s)	790, 872, 1155, 1252, 1939
StyI	CCWWGG	2 cut(s)	1368, 1953
TaiI	ACGT	4 cut(s)	562, 919, 1477, 1948
TaqI	TCGA	4 cut(s)	142, 1138, 1569, 2129
TatI	WGTACW	3 cut(s)	354, 1777, 2316
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	6 cut(s)	787, 1040, 1129, 1337, 1557, 2359
Tru1I	TTAA	7 cut(s)	699, 846, 906, 1793, 1841, 2105, 2274
Tru9I	TTAA	7 cut(s)	699, 846, 906, 1793, 1841, 2105, 2274
TscAI	CASTG	7 cut(s)	217, 731, 820, 1288, 1347, 1819, 2035
TseFI	GTSAC	1 cut(s)	1283
TseI	GCWGC	5 cut(s)	182, 1160, 1756, 2045, 2141
Tsp45I	GTSAC	1 cut(s)	1283
TspRI	CASTG	7 cut(s)	217, 731, 820, 1288, 1347, 1819, 2035
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	2 cut(s)	1509, 2205
VspI	ATTAAT	1 cut(s)	1841
XapI	RAATTY	6 cut(s)	144, 629, 647, 900, 1360, 1427
XbaI	TCTAGA	1 cut(s)	1543
XceI	RCATGY	2 cut(s)	609, 1746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1375
XhoI	CTCGAG	1 cut(s)	1137
XspI	CTAG	6 cut(s)	615, 1467, 1544, 1554, 1653, 1875
Zsp2I	ATGCAT	2 cut(s)	2270, 2309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.