Rorug01G0388000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001384
Physical Location & Seq
Forward (+)
49937052 .. 49938351
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0388000.1

Sequence Viewer

Length: 618 bp
ATGCTAGAGAACGCTCTTGCTGCTCAAACACAACAGGTAGACCGATTGACAGAGTTAGTGCAAGGTCTCGTTGCTCGGCTAGAAAAAGGAGAGAATGTCAATATTGCACAGAGAAAACGAAAAGAGAATCTGAATTGTTCTAGCGATATAGCACAAAGCAAGCAGAAAGATGCTAGTGTTATAAGTTCTAACAGGGAGAAGGGCAATAGGGAGCAAATCAAAGAAAATACCTACGGAAAGGAGCCACATTTGGGAAATGGTAGGCCAAAAAAGAGCCAAAAGACAGATGCAGCGGAAAAAGTGTACTTGCTAAGTTGGTTTGCTAAAGAAGAAGAGGTCGTTGCTACTGGTGGCATTTTGTCAAAAGATCCAGAAGCTTTGGTGCATCATGTGCCTGTAGGCCATGATTGTTGGAAAATTTCAGTGCACCAAGGTTTTTATGATATAGCTTTGTATCGACCGACAAGTGAGTTCAATAAGCTTGATGCATCTAGAGGAAGTGTAATCGCATGGCCTGTCAAATCTATCAAGGTTGCTTATGTAGAAAATGATCCAGGTGGTGGAAGTGATGTTGAAACATCAGGAGGACCTGTACATCCTCAAACCTTGAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.61

Weight (kDa)

7.77

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 108 - 178 9.1e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 560
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 293
AclWI GGATC 2 cut(s) 362, 545
AcsI RAATTY 1 cut(s) 417
AfaI GTAC 2 cut(s) 305, 594
AfiI CCNNNNNNNGG 2 cut(s) 251, 560
AgsI TTSAA 2 cut(s) 475, 575
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 3 cut(s) 377, 449, 481
AluI AGCT 3 cut(s) 377, 449, 481
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 425
AlwI GGATC 2 cut(s) 362, 545
AoxI GGCC 3 cut(s) 263, 400, 512
ApaLI GTGCAC 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 20, 290
ApoI RAATTY 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 587
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 7, 302
BciT130I CCWGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 5 cut(s) 5, 80, 141, 174, 492
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 2 cut(s) 21, 291
BlsI GCNGC 2 cut(s) 22, 292
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 5 cut(s) 160, 277, 394, 475, 497
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 576, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 560
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 2 cut(s) 251, 560
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 2 cut(s) 7, 302
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 3 cut(s) 265, 402, 514
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 251, 560
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 3 cut(s) 265, 402, 514
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 429
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 367, 550
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 265, 402, 514
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 2 cut(s) 362, 545
BspTNI GGTCTC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 2 cut(s) 367, 550
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 555
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 2 cut(s) 370, 553
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 367, 550
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 2 cut(s) 20, 391
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 7, 302
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 3 cut(s) 265, 402, 514
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 304, 593
CviAII CATG 3 cut(s) 389, 404, 510
CviQI GTAC 2 cut(s) 304, 593
DdeI CTNAG 1 cut(s) 311
DpnI GATC 2 cut(s) 369, 552
DpnII GATC 2 cut(s) 367, 550
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 3 cut(s) 392, 407, 513
FaiI YATR 8 cut(s) 149, 182, 390, 405, 441, 446, 511, 540
FatI CATG 3 cut(s) 388, 403, 509
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 21, 291
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 2 cut(s) 21, 291
FspBI CTAG 5 cut(s) 5, 80, 141, 174, 492
GluI GCNGC 2 cut(s) 21, 291
HaeIII GGCC 3 cut(s) 265, 402, 514
Hin1II CATG 3 cut(s) 392, 407, 513
HindIII AAGCTT 2 cut(s) 375, 479
HinfI GANTC 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 40, 304, 427
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 371, 492, 582
Hpy8I GTNNAC 3 cut(s) 40, 304, 427
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 6 cut(s) 61, 107, 290, 385, 427, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 391
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 3 cut(s) 392, 407, 513
Kzo9I GATC 2 cut(s) 367, 550
LmnI GCTCC 2 cut(s) 211, 241
Lsp1109I GCAGC 2 cut(s) 7, 302
LweI GCATC 5 cut(s) 160, 277, 394, 475, 497
MaeI CTAG 5 cut(s) 5, 80, 141, 174, 492
MalI GATC 2 cut(s) 369, 552
MboI GATC 2 cut(s) 367, 550
MboII GAAGA 2 cut(s) 341, 344
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 2 cut(s) 133, 417
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 328, 488, 578, 603, 609
Mph1103I ATGCAT 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 2 cut(s) 20, 391
NdeII GATC 2 cut(s) 367, 550
NlaIII CATG 3 cut(s) 392, 407, 513
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 490
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 2 cut(s) 22, 292
PpuMI RGGWCCY 1 cut(s) 587
PsiI TTATAA 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 587
PspPPI RGGWCCY 1 cut(s) 587
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 305, 594
RsaNI GTAC 2 cut(s) 304, 593
SatI GCNGC 2 cut(s) 21, 291
Sau3AI GATC 2 cut(s) 367, 550
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 5 cut(s) 160, 277, 394, 475, 497
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse9I AATT 2 cut(s) 133, 417
SsiI CCGC 1 cut(s) 293
SspI AATATT 1 cut(s) 103
SspMI CTAG 5 cut(s) 5, 80, 141, 174, 492
StyD4I CCNGG 1 cut(s) 553
StyI CCWWGG 1 cut(s) 430
TaqI TCGA 1 cut(s) 457
TaqII GACCGA 2 cut(s) 57, 475
TasI AATT 2 cut(s) 133, 417
TatI WGTACW 2 cut(s) 303, 592
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 429
TseI GCWGC 2 cut(s) 20, 290
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 429
Van91I CCANNNNNTGG 1 cut(s) 560
VneI GTGCAC 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 5 cut(s) 5, 80, 141, 174, 492
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.