Rorug01G0388100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001384
Physical Location & Seq
Forward (+)
49939155 .. 49940381
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0388100.1

Sequence Viewer

Length: 1167 bp
ATGGCTGAAGCACTAGTTAGCGTTCTCCTCGACCGTTTGGTTACTATCACCACGGACAAGGTCCGAGGAGAGTTAAACTTGGTCACTGGAGTTGAGGAAGAAGTCAAAAGCCTCACCCACAATCTCGAAGCCATTCAAGCTGTGCTCAAGGATGCAGAGCAGAGGCAAGTGACGGAGGCCGCCGTGAAACGTTGGCTGAGTAAACTGACTGAAGTTTCTGACGAGATGGATAATGTATTGGATGAATGGAGCTATCAAGTCCTAAAGCAACGAATGGAGGGTGAAGTTTCCGACGAGATGGATAATGTTTTGGATGAGTGGAGCACTCAAGGGTCTCAAGTCCTAAAGCAACAGATGGAGGGTGAAAATGTGAAGAAGGTATGTTGCCCCTCTTTTTCATCTTGCTTTAGATTTGGCCAAGTCAGTAGGTTGAATATTCCTCGCAATATTGTCAGTAGATTGAATAATCGTCGCGATATCGGTGTGAGGATAAAAAAGCTAAATGAAAAATTAGCTTCGATTGATCAGGAAAAACAAAGATTTAACTTTCAAAACAACACAACAAGAGGCCCTGAAATACCTCGACAAGAAACTACATGTTTTCCCACTGGTAAGATATTTGGTCGAGAAAATGAAAAGAGCATTATATTGACCAAATTGCTAAGTGACAGTAGTCAAGATTGTGAGGTGCCTCTTATCATCCCTATTGTTGGGATGGGGGGAATGGGGAAAACAACTATTTCCCAACTTGCCTATAATGACGAAAATGTGAAAACCCATTTTGATAAGAGAATATGGGTTTGTGTGTCAGACCCTTTTGACGAGATCAAAATTGCTAGAGCTATTGTCGAAGGTTTAGATAATAATAACACTTCAAATAGCTTGCAAATTTTGATGCAATGTATACATACATTGATTCAGGGGGAAAAAATTCTCCTTGTCTTAGATGATGTGTGGAACCCACGACATACCCAGTGGGAAGAATTAATTAAACCTTTTTGTCATGGCGCTATGGGTAGTAGAGTACTAGTGACTACTCGAAATGAGGAAGTTGCTACTCTGATGAAAGCAACTAGGGCTAGGCTCGGGTCGGGCCGGGCCCGAAAATTAGTGAGACCGAGACCGAACCCGAAAATGTCGGTTCGGGCCGGTTCGGTCTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

43.96

Weight (kDa)

7.56

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 93 8e-22 Rx N-terminal domain
NB-ARC PF00931 215 - 358 1e-31 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 1 cut(s) 904
AccII CGCG 1 cut(s) 474
AciI CCGC 1 cut(s) 180
AclI AACGTT 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 2 cut(s) 888, 930
AcuI CTGAAG 2 cut(s) 27, 231
AfaI GTAC 1 cut(s) 1026
AfiI CCNNNNNNNGG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 5 cut(s) 137, 433, 463, 551, 876
AhlI ACTAGT 2 cut(s) 13, 1027
AluBI AGCT 6 cut(s) 140, 252, 499, 515, 842, 882
AluI AGCT 6 cut(s) 140, 252, 499, 515, 842, 882
Alw21I GWGCWC 2 cut(s) 147, 326
Alw26I GTCTC 3 cut(s) 339, 1108, 1114
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 6 cut(s) 177, 415, 568, 1093, 1098, 1146
ApaI GGGCCC 1 cut(s) 1102
ApoI RAATTY 2 cut(s) 888, 930
AseI ATTAAT 1 cut(s) 986
Asp700I GAANNNNTTC 2 cut(s) 132, 930
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 6 cut(s) 61, 569, 1093, 1098, 1099, 1146
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 40, 106, 293, 374
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 1102
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 1102
Bbv12I GWGCWC 2 cut(s) 147, 326
BccI CCATC 4 cut(s) 220, 292, 349, 709
BceAI ACGGC 1 cut(s) 167
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 339, 1108, 1114
BcuI ACTAGT 2 cut(s) 13, 1027
BfaI CTAG 5 cut(s) 14, 837, 1028, 1074, 1080
BfoI RGCGCY 1 cut(s) 1011
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 1026
Bme1390I CCNGG 1 cut(s) 1097
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 6 cut(s) 61, 569, 1093, 1098, 1099, 1146
BmiI GGNNCC 3 cut(s) 690, 959, 1100
BmrFI CCNGG 1 cut(s) 1097
BmrI ACTGGG 1 cut(s) 967
BmsI GCATC 2 cut(s) 142, 885
BmuI ACTGGG 1 cut(s) 967
BoxI GACNNNNGTC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 3 cut(s) 131, 312, 321
BpuMI CCSGG 1 cut(s) 1097
BsaI GGTCTC 3 cut(s) 339, 1108, 1114
BsaJI CCNNGG 2 cut(s) 51, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 3 cut(s) 91, 613, 973
Bse3DI GCAATG 1 cut(s) 905
BseDI CCNNGG 2 cut(s) 51, 64
BseGI GGATG 5 cut(s) 157, 247, 319, 699, 720
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMI GCAATG 1 cut(s) 905
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 3 cut(s) 91, 613, 973
BseRI GAGGAG 2 cut(s) 17, 81
BseSI GKGCMC 1 cut(s) 1102
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 6 cut(s) 179, 417, 570, 1095, 1100, 1148
BshNI GGYRCC 1 cut(s) 688
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 147, 326
BsiHKCI CYCGRG 1 cut(s) 1085
BsiSI CCGG 2 cut(s) 1096, 1149
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 3 cut(s) 339, 1108, 1114
BsnI GGCC 6 cut(s) 179, 417, 570, 1095, 1100, 1148
Bso31I GGTCTC 3 cut(s) 339, 1108, 1114
BsoBI CYCGRG 1 cut(s) 1085
Bsp120I GGGCCC 1 cut(s) 1098
Bsp1286I GDGCHC 3 cut(s) 147, 326, 1102
Bsp143I GATC 2 cut(s) 523, 825
Bsp68I TCGCGA 1 cut(s) 474
BspACI CCGC 1 cut(s) 180
BspANI GGCC 6 cut(s) 179, 417, 570, 1095, 1100, 1148
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 690, 959, 1100
BspT107I GGYRCC 1 cut(s) 688
BspTNI GGTCTC 3 cut(s) 339, 1108, 1114
BsrDI GCAATG 1 cut(s) 905
BsrFI RCCGGY 1 cut(s) 1148
BsrI ACTGG 3 cut(s) 91, 613, 973
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 51, 64
BssMI GATC 2 cut(s) 523, 825
BssNAI GTATAC 1 cut(s) 905
Bst1107I GTATAC 1 cut(s) 905
Bst4CI ACNGT 2 cut(s) 35, 671
BstC8I GCNNGC 1 cut(s) 884
BstDEI CTNAG 3 cut(s) 197, 662, 943
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 5 cut(s) 157, 247, 319, 699, 720
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 2 cut(s) 526, 828
BstMAI GTCTC 3 cut(s) 339, 1108, 1114
BstMBI GATC 2 cut(s) 523, 825
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 137, 1076
BstNSI RCATGY 1 cut(s) 600
BstPAI GACNNNNGTC 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 1102
BstUI CGCG 1 cut(s) 474
BstZ17I GTATAC 1 cut(s) 905
BsuRI GGCC 6 cut(s) 179, 417, 570, 1095, 1100, 1148
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 5 cut(s) 157, 247, 319, 699, 720
BtsIMutI CAGTG 3 cut(s) 84, 606, 980
BtuMI TCGCGA 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 884
CfoI GCGC 1 cut(s) 1010
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 6 cut(s) 61, 569, 1093, 1098, 1099, 1146
Csp6I GTAC 1 cut(s) 1025
CviAII CATG 2 cut(s) 597, 1004
CviQI GTAC 1 cut(s) 1025
DdeI CTNAG 3 cut(s) 197, 662, 943
DpnI GATC 2 cut(s) 525, 827
DpnII GATC 2 cut(s) 523, 825
EaeI YGGCCR 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 1102
Eco31I GGTCTC 3 cut(s) 339, 1108, 1114
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 27, 231
Eco88I CYCGRG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 569
EcoRV GATATC 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 1102
FaeI CATG 2 cut(s) 600, 1007
FatI CATG 2 cut(s) 596, 1003
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 5 cut(s) 164, 254, 326, 686, 727
FriOI GRGCYC 1 cut(s) 1102
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 5 cut(s) 14, 837, 1028, 1074, 1080
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 6 cut(s) 179, 417, 570, 1095, 1100, 1148
HapII CCGG 2 cut(s) 1096, 1149
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 2 cut(s) 600, 1007
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HinfI GANTC 1 cut(s) 916
HpaII CCGG 2 cut(s) 1096, 1149
HphI GGTGA 4 cut(s) 40, 106, 293, 374
Hpy166II GTNNAC 2 cut(s) 203, 905
Hpy188I TCNGA 5 cut(s) 65, 220, 292, 811, 1062
Hpy188III TCNNGA 5 cut(s) 125, 473, 527, 626, 677
Hpy8I GTNNAC 2 cut(s) 203, 905
Hpy99I CGWCG 2 cut(s) 296, 474
HpyAV CCTTC 2 cut(s) 370, 845
HpyCH4III ACNGT 2 cut(s) 35, 671
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 3 cut(s) 155, 886, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 1076
HpyF3I CTNAG 3 cut(s) 197, 662, 943
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 600, 1007
HspAI GCGC 1 cut(s) 1008
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 523, 825
LmnI GCTCC 2 cut(s) 249, 321
LpnPI CCDG 8 cut(s) 72, 512, 585, 594, 905, 986, 1109, 1162
LweI GCATC 2 cut(s) 142, 885
MaeI CTAG 5 cut(s) 14, 837, 1028, 1074, 1080
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 5 cut(s) 40, 82, 169, 665, 1030
MalI GATC 2 cut(s) 525, 827
MboI GATC 2 cut(s) 523, 825
MboII GAAGA 3 cut(s) 110, 385, 992
MhlI GDGCHC 3 cut(s) 147, 326, 1102
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 8 cut(s) 509, 656, 831, 888, 930, 983, 987, 1106
MluNI TGGCCA 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 315
Mox20I TGGCCA 1 cut(s) 417
MroXI GAANNNNTTC 2 cut(s) 132, 930
MscI TGGCCA 1 cut(s) 417
MseI TTAA 4 cut(s) 74, 543, 986, 990
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 2 cut(s) 1096, 1149
MspR9I CCNGG 1 cut(s) 1097
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 137, 1076
NciI CCSGG 1 cut(s) 1097
NdeII GATC 2 cut(s) 523, 825
NlaIII CATG 2 cut(s) 600, 1007
NlaIV GGNNCC 3 cut(s) 690, 959, 1100
NmuCI GTSAC 4 cut(s) 82, 169, 665, 1030
NruI TCGCGA 1 cut(s) 474
NspI RCATGY 1 cut(s) 600
PacI TTAATTAA 1 cut(s) 990
PciI ACATGT 1 cut(s) 596
PdmI GAANNNNTTC 2 cut(s) 132, 930
PfeI GAWTC 1 cut(s) 916
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 181
PscI ACATGT 1 cut(s) 596
PshAI GACNNNNGTC 1 cut(s) 672
PshBI ATTAAT 1 cut(s) 986
Psp1406I AACGTT 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 690, 959, 1100
PspOMI GGGCCC 1 cut(s) 1098
PspPI GGNCC 6 cut(s) 61, 569, 1093, 1098, 1099, 1146
PsyI GACNNNGTC 1 cut(s) 59
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
SaqAI TTAA 4 cut(s) 74, 543, 986, 990
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 523, 825
Sau96I GGNCC 6 cut(s) 61, 569, 1093, 1098, 1099, 1146
ScaI AGTACT 1 cut(s) 1026
ScrFI CCNGG 1 cut(s) 1097
SduI GDGCHC 3 cut(s) 147, 326, 1102
SfaNI GCATC 2 cut(s) 142, 885
SinI GGWCC 1 cut(s) 61
SmlI CTYRAG 3 cut(s) 146, 327, 336
SmoI CTYRAG 3 cut(s) 146, 327, 336
SpeI ACTAGT 2 cut(s) 13, 1027
Sse9I AATT 8 cut(s) 509, 656, 831, 888, 930, 983, 987, 1106
SsiI CCGC 1 cut(s) 180
SspI AATATT 2 cut(s) 436, 448
SspMI CTAG 5 cut(s) 14, 837, 1028, 1074, 1080
StyD4I CCNGG 1 cut(s) 1095
TaaI ACNGT 2 cut(s) 35, 671
TaiI ACGT 1 cut(s) 193
TaqI TCGA 7 cut(s) 30, 126, 518, 583, 625, 849, 1039
TaqII GACCGA 3 cut(s) 1132, 1138, 1144
TasI AATT 8 cut(s) 509, 656, 831, 888, 930, 983, 987, 1106
TatI WGTACW 1 cut(s) 1024
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 4 cut(s) 74, 543, 986, 990
Tru9I TTAA 4 cut(s) 74, 543, 986, 990
TscAI CASTG 3 cut(s) 91, 613, 980
TseFI GTSAC 4 cut(s) 82, 169, 665, 1030
Tsp45I GTSAC 4 cut(s) 82, 169, 665, 1030
TspDTI ATGAA 5 cut(s) 258, 387, 519, 648, 1079
TspGWI ACGGA 2 cut(s) 68, 188
TspRI CASTG 3 cut(s) 91, 613, 980
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 986
XapI RAATTY 2 cut(s) 888, 930
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 904
XmnI GAANNNNTTC 2 cut(s) 132, 930
XspI CTAG 5 cut(s) 14, 837, 1028, 1074, 1080
ZrmI AGTACT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.