Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001384

Physical Location & Seq

Genomic Coordinates Forward (+)

36707007 .. 36707285

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG331000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCGGACGACGCGGTGGAGGGGCTTGGTACTGGGCCCACCTAGAGCCCATTCTGGTTCATAACACCGACACCAGGCTACCCAAGGCCGTGAAGCTCCGGTGCACTCTCTGCGAGGCCGTTTTCTTGGCGTCGAACCCGTCGTTCACGGCGTCGGAGCACCTAAAGTGCAGGACTTGCCCCAATTTCAGCTCCGTTTCCAAACCCATTTCGTCTTCGTCGCCAATATCGACTTCTTTGCCCAGCTCCGCTCCGCGGCCGCTGTCCCACCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659

Protein Analysis

92

Amino Acids

9.96

Weight (kDa)

9.5

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7963	PF25908	3 - 64	2e-31	Domain of unknown function (DUF7963)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12380 AT1G62870
fragaria_vesca	FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_5g00791 FvH4_7g28141
malus_domestica	MD01G1185300.v1.1 MD04G1078600.v1.1 MD07G1257500.v1.1
prunus_persica	Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.2G281700_v2.0.a1 Prupe.5G080400_v2.0.a1 Prupe.5G080400_v2.0.a1 Prupe.5G080400_v2.0.a1
pyrus_communis	pycom01g19690 pycom04g07040 pycom06g05190 pycom07g23050
rosa_chinensis	RchiOBHm_Chr1g0375071 RchiOBHm_Chr7g0201331
rosa_laevigata	RLG00000003680 RLG00000026690
rosa_multiflora	Rmu_sc0003776.1_g000009 Rmu_sc0012376.1_g000005
rosa_roxburghii	Rroxscaffold_3G00255360 Rroxscaffold_4G00283040 Rroxscaffold_7G00158650
rosa_rugosa	Rorug01G0387900 Rorug01G0388000 Rorug01G0388100 Rorug02G0295300 Rorug07G0062500 Rorug07G0062500 Rorug07G0062600
rosa_samantha	Rh1AG398600 Rh1BG365900 Rh1CG378800 Rh1DG396600 Rh3DG331000 Rh7AG189900 Rh7BG192400 Rh7CG200700 Rh7DG194800
rosa_wichuraiana	Rw1G035390 Rw7G016670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	15, 256
AciI	CCGC	5 cut(s)	15, 249, 254, 256, 260
AcoI	YGGCCR	2 cut(s)	3, 257
AcyI	GRCGYC	2 cut(s)	131, 152
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	75, 255
AjnI	CCWGG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	3 cut(s)	97, 192, 246
AluI	AGCT	3 cut(s)	97, 192, 246
Alw21I	GWGCWC	2 cut(s)	107, 162
Alw44I	GTGCAC	1 cut(s)	103
AoxI	GGCC	5 cut(s)	3, 36, 87, 117, 257
ApaI	GGGCCC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	36, 37
BaeGI	GKGCMC	2 cut(s)	40, 107
BanII	GRGCYC	2 cut(s)	40, 51
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	107, 162
BceAI	ACGGC	3 cut(s)	74, 104, 165
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	257, 260
BlsI	GCNGC	2 cut(s)	258, 261
Bme1390I	CCNGG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	36, 37
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	207
BsaHI	GRCGYC	2 cut(s)	131, 152
BsaJI	CCNNGG	2 cut(s)	84, 254
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 255
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	84, 254
BseLI	CCNNNNNNNGG	2 cut(s)	75, 255
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	40, 107
BseX3I	CGGCCG	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	15, 256
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	5 cut(s)	5, 38, 89, 119, 259
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	107, 162
BsiSI	CCGG	2 cut(s)	6, 100
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	75, 255
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	5 cut(s)	5, 38, 89, 119, 259
Bsp120I	GGGCCC	1 cut(s)	36
Bsp1286I	GDGCHC	4 cut(s)	40, 51, 107, 162
BspACI	CCGC	5 cut(s)	15, 249, 254, 256, 260
BspANI	GGCC	5 cut(s)	5, 38, 89, 119, 259
BspFNI	CGCG	2 cut(s)	15, 256
BspLI	GGNNCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	84, 254
BssNI	GRCGYC	2 cut(s)	131, 152
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	76
BstACI	GRCGYC	2 cut(s)	131, 152
BstAPI	GCANNNNNTGC	2 cut(s)	111, 177
BstDSI	CCRYGG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	15, 256
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 177
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSLI	GKGCMC	2 cut(s)	40, 107
BstUI	CGCG	2 cut(s)	15, 256
BstV2I	GAAGAC	1 cut(s)	207
BstZI	CGGCCG	1 cut(s)	257
BsuRI	GGCC	5 cut(s)	5, 38, 89, 119, 259
BtgI	CCRYGG	1 cut(s)	254
CciNI	GCGGCCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	36, 37
Cfr42I	CCGCGG	1 cut(s)	257
CseI	GACGC	3 cut(s)	21, 120, 141
Csp6I	GTAC	1 cut(s)	31
CviQI	GTAC	1 cut(s)	31
EaeI	YGGCCR	2 cut(s)	3, 257
EagI	CGGCCG	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	40, 51
Eco52I	CGGCCG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	2 cut(s)	40, 51
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	1 cut(s)	63
FaqI	GGGAC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	257, 260
FriOI	GRGCYC	2 cut(s)	40, 51
Fsp4HI	GCNGC	2 cut(s)	257, 260
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	2 cut(s)	257, 260
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	5 cut(s)	5, 38, 89, 119, 259
HapII	CCGG	2 cut(s)	6, 100
HgaI	GACGC	3 cut(s)	21, 120, 141
Hin1I	GRCGYC	2 cut(s)	131, 152
HpaII	CCGG	2 cut(s)	6, 100
Hpy166II	GTNNAC	2 cut(s)	105, 147
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	105, 147
Hpy99I	CGWCG	5 cut(s)	15, 136, 145, 157, 223
HpyCH4V	TGCA	2 cut(s)	105, 171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 177
Hsp92I	GRCGYC	2 cut(s)	131, 152
KspI	CCGCGG	1 cut(s)	257
LmnI	GCTCC	5 cut(s)	102, 157, 197, 251, 256
LpnPI	CCDG	8 cut(s)	19, 19, 41, 61, 88, 113, 157, 256
MaeI	CTAG	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	207
MhlI	GDGCHC	4 cut(s)	40, 51, 107, 162
MluCI	AATT	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	14, 109
MspA1I	CMGCKG	2 cut(s)	256, 262
MspI	CCGG	2 cut(s)	6, 100
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	15, 256
MwoI	GCNNNNNNNGC	2 cut(s)	111, 177
NlaIV	GGNNCC	1 cut(s)	38
NotI	GCGGCCGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	3 cut(s)	140, 149, 227
PkrI	GCNGC	2 cut(s)	258, 261
Psp6I	CCWGG	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	38
PspOMI	GGGCCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	36, 37
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacII	CCGCGG	1 cut(s)	257
SatI	GCNGC	2 cut(s)	257, 260
Sau96I	GGNCC	2 cut(s)	36, 37
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	4 cut(s)	40, 51, 107, 162
SetI	ASST	5 cut(s)	45, 99, 165, 194, 248
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	5 cut(s)	15, 249, 254, 256, 260
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	2 cut(s)	134, 230
TasI	AATT	1 cut(s)	184
TauI	GCSGC	2 cut(s)	259, 262
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.