Rroxscaffold_7G00158650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001384
Physical Location & Seq
Forward (+)
1997850 .. 2001711
3862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158650.1

Sequence Viewer

Length: 423 bp
ATGGCGGTTACTAACACCACTACACGGACGGTGGCCACCGGCCGGACGACGCGGTGGAGGGGCTTGGTACTGGGCCCACCTAGAGCTCATTCGGTTCATAACACCGACACCGGGCTACCCAAGGCCGTGAAGCTCGGTGCACTCTCGCGAGGCCGTTTTCTTGGCGTCGACAGGTCGTGCACGGAGTCGGAGCACCTAAAGTGCAGGACTTGCCCCAATTTCAGCTCCGTTTCCAAACTTATTTCGTCTCCGTCACCAATATCGAATTCTTTGCCCAACTCCGCTCCGCGGCCGCCGTCCCACCATTGCGAAATTTTTGCTCTTTCGAGCTCGTTGGTCAATCAACTTGCAACTGGTCCATCATTAGTCATACAAAACAGTGAACTCGGTGCAAGTAGACAAGTGCATTCGCTAATTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

140

Amino Acids

14.89

Weight (kDa)

10.78

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7963 PF25908 32 - 75 3.8e-06 Domain of unknown function (DUF7963)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 284
AccI GTMKAC 2 cut(s) 168, 397
AccII CGCG 3 cut(s) 52, 148, 289
AciI CCGC 6 cut(s) 5, 52, 282, 287, 289, 293
AcoI YGGCCR 3 cut(s) 33, 40, 290
AcsI RAATTY 2 cut(s) 265, 312
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 4 cut(s) 24, 42, 111, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 250, 282
AluBI AGCT 4 cut(s) 86, 133, 225, 330
AluI AGCT 4 cut(s) 86, 133, 225, 330
Alw21I GWGCWC 5 cut(s) 88, 142, 182, 195, 332
Alw26I GTCTC 1 cut(s) 252
Alw44I GTGCAC 2 cut(s) 138, 178
AoxI GGCC 6 cut(s) 33, 40, 73, 123, 151, 290
ApaI GGGCCC 1 cut(s) 77
ApaLI GTGCAC 2 cut(s) 138, 178
ApoI RAATTY 2 cut(s) 265, 312
AspS9I GGNCC 3 cut(s) 73, 74, 356
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 246
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 3 cut(s) 77, 142, 182
BalI TGGCCA 1 cut(s) 35
BanII GRGCYC 3 cut(s) 77, 88, 332
Bbv12I GWGCWC 5 cut(s) 88, 142, 182, 195, 332
BccI CCATC 1 cut(s) 367
BceAI ACGGC 3 cut(s) 110, 138, 280
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 299, 333
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 290, 293
BlsI GCNGC 2 cut(s) 291, 294
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 3 cut(s) 73, 74, 356
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 120, 287
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 42, 111, 288
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 75, 358
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 120, 287
BseLI CCNNNNNNNGG 4 cut(s) 24, 42, 111, 288
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 75, 358
BseSI GKGCMC 3 cut(s) 77, 142, 182
BseX3I CGGCCG 2 cut(s) 40, 290
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 3 cut(s) 52, 148, 289
Bsh1285I CGRYCG 2 cut(s) 43, 293
BshFI GGCC 6 cut(s) 35, 42, 75, 125, 153, 292
BsiEI CGRYCG 2 cut(s) 43, 293
BsiHKAI GWGCWC 5 cut(s) 88, 142, 182, 195, 332
BsiSI CCGG 3 cut(s) 39, 43, 111
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 4 cut(s) 24, 42, 111, 288
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 6 cut(s) 35, 42, 75, 125, 153, 292
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 6 cut(s) 77, 88, 142, 182, 195, 332
Bsp68I TCGCGA 1 cut(s) 148
BspACI CCGC 6 cut(s) 5, 52, 282, 287, 289, 293
BspANI GGCC 6 cut(s) 35, 42, 75, 125, 153, 292
BspFNI CGCG 3 cut(s) 52, 148, 289
BspLI GGNNCC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 75, 358
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 120, 287
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 31, 380
BstACI GRCGYC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 287
BstFNI CGCG 3 cut(s) 52, 148, 289
BstMAI GTCTC 1 cut(s) 252
BstMCI CGRYCG 2 cut(s) 43, 293
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 110
BstSLI GKGCMC 3 cut(s) 77, 142, 182
BstUI CGCG 3 cut(s) 52, 148, 289
BstZI CGGCCG 2 cut(s) 40, 290
BsuRI GGCC 6 cut(s) 35, 42, 75, 125, 153, 292
BtgI CCRYGG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 385
BtuMI TCGCGA 1 cut(s) 148
CciNI GCGGCCGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 3 cut(s) 73, 74, 356
Cfr42I CCGCGG 1 cut(s) 290
CseI GACGC 2 cut(s) 58, 154
Csp6I GTAC 1 cut(s) 68
CviQI GTAC 1 cut(s) 68
EaeI YGGCCR 3 cut(s) 33, 40, 290
EagI CGGCCG 2 cut(s) 40, 290
Ecl136II GAGCTC 2 cut(s) 86, 330
EclXI CGGCCG 2 cut(s) 40, 290
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 3 cut(s) 77, 88, 332
Eco47I GGWCC 1 cut(s) 356
Eco52I CGGCCG 2 cut(s) 40, 290
Eco53kI GAGCTC 2 cut(s) 86, 330
EcoICRI GAGCTC 2 cut(s) 86, 330
EcoRI GAATTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 3 cut(s) 77, 88, 332
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 252
FaiI YATR 3 cut(s) 99, 371, 421
FaqI GGGAC 1 cut(s) 283
FblI GTMKAC 2 cut(s) 168, 397
Fnu4HI GCNGC 2 cut(s) 290, 293
FriOI GRGCYC 3 cut(s) 77, 88, 332
Fsp4HI GCNGC 2 cut(s) 290, 293
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 290, 293
HaeIII GGCC 6 cut(s) 35, 42, 75, 125, 153, 292
HapII CCGG 3 cut(s) 39, 43, 111
HgaI GACGC 2 cut(s) 58, 154
Hin1I GRCGYC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 185
HpaII CCGG 3 cut(s) 39, 43, 111
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 5 cut(s) 140, 169, 180, 383, 398
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 5 cut(s) 140, 169, 180, 383, 398
Hpy99I CGWCG 2 cut(s) 52, 170
HpyCH4III ACNGT 2 cut(s) 31, 380
HpyCH4V TGCA 6 cut(s) 140, 180, 204, 350, 392, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 165
KspI CCGCGG 1 cut(s) 290
LmnI GCTCC 3 cut(s) 190, 230, 289
LpnPI CCDG 7 cut(s) 52, 56, 56, 124, 157, 190, 339
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 7, 252
MbiI CCGCTC 1 cut(s) 284
MhlI GDGCHC 6 cut(s) 77, 88, 142, 182, 195, 332
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 217, 265, 312, 414
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 51, 143
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 3 cut(s) 39, 43, 111
MspR9I CCNGG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 406
MvnI CGCG 3 cut(s) 52, 148, 289
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 252
NotI GCGGCCGC 1 cut(s) 290
NruI TCGCGA 1 cut(s) 148
PctI GAATGC 1 cut(s) 406
PkrI GCNGC 2 cut(s) 291, 294
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 2 cut(s) 88, 332
PspN4I GGNNCC 1 cut(s) 75
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 3 cut(s) 73, 74, 356
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SacI GAGCTC 2 cut(s) 88, 332
SacII CCGCGG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 167
SatI GCNGC 2 cut(s) 290, 293
Sau96I GGNCC 3 cut(s) 73, 74, 356
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 6 cut(s) 77, 88, 142, 182, 195, 332
SetI ASST 7 cut(s) 82, 88, 135, 176, 198, 227, 332
Sfr303I CCGCGG 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 290
SinI GGWCC 1 cut(s) 356
Sse9I AATT 4 cut(s) 217, 265, 312, 414
SsiI CCGC 6 cut(s) 5, 52, 282, 287, 289, 293
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 2 cut(s) 88, 332
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 31, 380
TaqI TCGA 3 cut(s) 168, 263, 326
TasI AATT 4 cut(s) 217, 265, 312, 414
TauI GCSGC 2 cut(s) 292, 295
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 4 cut(s) 40, 197, 217, 240
TspRI CASTG 1 cut(s) 385
VneI GTGCAC 2 cut(s) 138, 178
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 2 cut(s) 265, 312
XmiI GTMKAC 2 cut(s) 168, 397
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.