Rw1G035390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001384
Physical Location & Seq
Reverse (-)
63194352 .. 63200584
6233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035390.1

Sequence Viewer

Length: 1767 bp
ATGTTGGAAAACAGTGTCAAAAAGCTTAAAAGCCCCAAGCCTTCTTCCGCTAATGTTTCACTTACTAAGGAGCAGGTTGATTCTGCACTTGACTTGTTGTCTGAGTGGTTCTATGAGTCTTGTGGGTCTGTCTCGTTTTCGAGCCTCGAGCATCCCAAGTTCAAGGCCTTTCTCGGCCAGGTGGGCTTGCCTGCTGTGTTGCAGCGTGAGCTTTCGGGTGCTCGGCTTGATGCTAAGTTTGCTGAGGCTAAAGCCGAGTCTGAGGCTAGGATAAGGGATGCAATGTTTTTTCAAGTGGCTTCAGATGGTTGGGAATGTAATAATTTTTGCGGTGGGGAGGAGAGTATGGTTAAGTTTATGGTTAATCTCCCGAATGGGAGCAGTGTTTTTCAGAAGGCTGTGTTTACTGGAGGGTCAGTTTCGTCGAAATATGCCGAGGAGGTAATGTGGGATGCGGTTAGTGGCGTGTGTGGGAATGCTGTGCAGCGTTGCGTGGGGATTGTTGCTGACAAGTATAAAGCCAAGGCATTGAGGAACTTGGAGAGTCAGAATCATTGGATGGTGAATGTTTCCTGTCAGCTACAGGGGTTTGTTTCTTTGATCAAGGATTTTAACAAAGAGCATAAGTTGTGCATGGTTGTTACTGATAATTGCGTGAAGGTTGCAAATTTTGTAAATACCACCACCGAGGTTAGGCGGATTTTTCAGAAGTACAAGATGCAGGAGCTTGGCTATGCTGGGCTGCTCCAAGTTTCTTCTTCCAAATGCGATAATTCAAAAAACTATGCGCCTGTTTATGCAATGCTGGAGGATATGTTGACCTGTTCCCGCATACTCCAAATGGTTGTCTTGGATGATTGCTATAAGGTGGCATGTGTGGAGGATCCAAGTGCTAGGGAAGTTGCAGCGCTGATTCAAAGTGAAGGATTCTGGAATGAACTAGAGGCAGTTTATTCACTTATGAAGCTGATAAGAGGGATGGCTCAGGAGATTGAAGCTGAGAGGCCATTAATTGGGCAATGCCTGCCTCTTTGGGAAGAGTTGCGAACAAAAGTAAAGGATTGGTGTGCCAAGTTTAACATTGATGAAGGACCTGTTGAGAAAATAGTTGAAAAACGCTTCGCAAAGAATTACCACCCAGCATGGTCGGCTGCATTCATACTTGATCCACAATACCTGATGAAGGATGCTAGTGGAAAGTACCTTCCACCATTCAAGTGCTTGACGCATGAGCAGGAGAAGGATGTAGATAAGCTCATTACCAGATTGGTATCCAGGGAAGAAGCGCATGTTGCATTAATGGAACTCATGAAATGGAGGACAGAAGGAATGGACCCACTTTATGCTCAGGCAGTTCAAGTTAAACAGCAAGATCCTGTTACTGGAAAAATGAAAATTGCAAACCCGCAGAGCAGTAGACTTGTGTGGGAAACTTGTCTAAGCAAGTTAAACATACTGGGGAAGGTTGCAGTGAGACTTATCTTCCTCCATGCAACCTCATTTGGATTCAAGTGTAATTGGTCTTTCATGAAATGGATTTGTGTACATAGGCACTCAAGGATAGGCCTTGAAAGGGCAGAGAAGATGATATTCATTGCAGCTCATGCGAAGCTTGAAAGAAGGGATCTCTCTAACGACGAAGAAAGGGAAGCAGAGCTGTTTGCGACTGCGAGTGTTGATGAGGACATGCTGAATGAGGTCCTTTCCGATGCACCCACAGTACTAGGGTTGCTTGAATCGGTTGGGTGGATGGCAAACCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

588

Amino Acids

66.27

Weight (kDa)

6.16

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 1417
AciI CCGC 6 cut(s) 48, 330, 455, 697, 829, 1406
AclWI GGATC 5 cut(s) 878, 891, 1160, 1367, 1632
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 4 cut(s) 713, 1202, 1545, 1722
AfeI AGCGCT 1 cut(s) 909
AfiI CCNNNNNNNGG 5 cut(s) 693, 1013, 1183, 1382, 1573
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 3 cut(s) 177, 1274, 1758
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 136, 1468
AlwI GGATC 5 cut(s) 878, 891, 1160, 1367, 1632
Ama87I CYCGRG 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 909
AoxI GGCC 4 cut(s) 165, 175, 1004, 1564
ApeKI GCWGC 6 cut(s) 202, 484, 742, 905, 1151, 1598
ApoI RAATTY 1 cut(s) 667
AseI ATTAAT 2 cut(s) 1010, 1298
AspLEI GCGC 3 cut(s) 790, 910, 1288
AspS9I GGNCC 3 cut(s) 1091, 1333, 1699
AsuHPI GGTGA 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 3 cut(s) 1091, 1333, 1699
BamHI GGATCC 1 cut(s) 883
Bbv12I GWGCWC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 214, 496, 729, 917, 1138, 1610
BccI CCATC 4 cut(s) 299, 553, 973, 1744
BciT130I CCWGG 3 cut(s) 179, 1276, 1760
BciVI GTATCC 1 cut(s) 1282
BclI TGATCA 1 cut(s) 600
BcoDI GTCTC 2 cut(s) 136, 1468
BfaI CTAG 5 cut(s) 267, 894, 941, 1191, 1724
BfmI CTRYAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 64
BfuI GTATCC 1 cut(s) 1282
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 6 cut(s) 203, 485, 743, 906, 1152, 1599
BlsI GCNGC 6 cut(s) 204, 486, 744, 907, 1153, 1600
BmcAI AGTACT 1 cut(s) 1722
Bme1390I CCNGG 3 cut(s) 179, 1276, 1760
Bme18I GGWCC 3 cut(s) 1091, 1333, 1699
BmeRI GACNNNNNGTC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 1091, 1333, 1699
BmiI GGNNCC 2 cut(s) 885, 1335
BmrFI CCNGG 3 cut(s) 179, 1276, 1760
BmrI ACTGGG 1 cut(s) 1466
BmsI GCATC 7 cut(s) 160, 220, 268, 442, 708, 1177, 1699
BmuI ACTGGG 1 cut(s) 1466
BpmI CTGGAG 2 cut(s) 429, 827
Bpu10I CCTNAGC 3 cut(s) 243, 984, 1347
BpuEI CTTGAG 1 cut(s) 1540
BsaBI GATNNNNATC 1 cut(s) 1270
BsaJI CCNNGG 4 cut(s) 435, 522, 687, 1275
BsaXI ACNNNNNCTCC 6 cut(s) 402, 431, 432, 461, 800, 830
Bsc4I CCNNNNNNNGG 5 cut(s) 693, 1013, 1183, 1382, 1573
Bse1I ACTGG 3 cut(s) 412, 1387, 1461
Bse3DI GCAATG 4 cut(s) 288, 807, 1025, 1593
Bse8I GATNNNNATC 1 cut(s) 1270
BseBI CCWGG 3 cut(s) 179, 1276, 1760
BseDI CCNNGG 4 cut(s) 435, 522, 687, 1275
BseGI GGATG 9 cut(s) 151, 283, 457, 564, 859, 984, 1192, 1249, 1755
BseJI GATNNNNATC 1 cut(s) 1270
BseLI CCNNNNNNNGG 5 cut(s) 693, 1013, 1183, 1382, 1573
BseMI GCAATG 4 cut(s) 288, 807, 1025, 1593
BseMII CTCAG 6 cut(s) 93, 234, 252, 990, 998, 1361
BseNI ACTGG 3 cut(s) 412, 1387, 1461
BseRI GAGGAG 2 cut(s) 353, 452
BseXI GCAGC 6 cut(s) 214, 496, 729, 917, 1138, 1610
BseYI CCCAGC 2 cut(s) 737, 1138
BsgI GTGCAG 2 cut(s) 69, 503
BshFI GGCC 4 cut(s) 167, 177, 1006, 1566
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 5 cut(s) 693, 1013, 1183, 1382, 1573
BsmAI GTCTC 2 cut(s) 136, 1468
BsmI GAATGC 2 cut(s) 481, 1154
BsnI GGCC 4 cut(s) 167, 177, 1006, 1566
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 1543
Bsp143I GATC 5 cut(s) 600, 883, 1165, 1372, 1624
BspACI CCGC 6 cut(s) 48, 330, 455, 697, 829, 1406
BspANI GGCC 4 cut(s) 167, 177, 1006, 1566
BspCNI CTCAG 6 cut(s) 94, 235, 253, 991, 997, 1360
BspHI TCATGA 2 cut(s) 1308, 1527
BspLI GGNNCC 2 cut(s) 885, 1335
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 5 cut(s) 878, 891, 1160, 1367, 1632
BsrDI GCAATG 4 cut(s) 288, 807, 1025, 1593
BsrGI TGTACA 1 cut(s) 1543
BsrI ACTGG 3 cut(s) 412, 1387, 1461
BssECI CCNNGG 4 cut(s) 435, 522, 687, 1275
BssMI GATC 5 cut(s) 600, 883, 1165, 1372, 1624
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 179, 1276, 1760
Bst4CI ACNGT 2 cut(s) 14, 1720
Bst6I CTCTTC 1 cut(s) 1032
BstAPI GCANNNNNTGC 2 cut(s) 1024, 1604
BstAUI TGTACA 1 cut(s) 1543
BstC8I GCNNGC 3 cut(s) 188, 192, 1025
BstDEI CTNAG 9 cut(s) 66, 102, 234, 243, 261, 984, 999, 1347, 1439
BstENI CCTNNNNNAGG 1 cut(s) 1181
BstF5I GGATG 9 cut(s) 151, 283, 457, 564, 859, 984, 1192, 1249, 1755
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 3 cut(s) 790, 910, 1288
BstKTI GATC 5 cut(s) 603, 886, 1168, 1375, 1627
BstMAI GTCTC 2 cut(s) 136, 1468
BstMBI GATC 5 cut(s) 600, 883, 1165, 1372, 1624
BstMWI GCNNNNNNNGC 8 cut(s) 183, 208, 239, 1024, 1148, 1292, 1604, 1760
BstNI CCWGG 3 cut(s) 179, 1276, 1760
BstNSI RCATGY 3 cut(s) 876, 1292, 1690
BstSCI CCNGG 3 cut(s) 177, 1274, 1758
BstSFI CTRYAG 1 cut(s) 581
BstV1I GCAGC 6 cut(s) 214, 496, 729, 917, 1138, 1610
BstX2I RGATCY 3 cut(s) 883, 1372, 1624
BstYI RGATCY 3 cut(s) 883, 1372, 1624
BsuI GTATCC 1 cut(s) 1282
BsuRI GGCC 4 cut(s) 167, 177, 1006, 1566
BtsCI GGATG 9 cut(s) 151, 283, 457, 564, 859, 984, 1192, 1249, 1755
BtsI GCAGTG 2 cut(s) 388, 1476
BtsIMutI CAGTG 3 cut(s) 19, 388, 1476
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 188, 192, 1025
CciI TCATGA 2 cut(s) 1308, 1527
CfoI GCGC 3 cut(s) 790, 910, 1288
Cfr13I GGNCC 3 cut(s) 1091, 1333, 1699
CseI GACGC 1 cut(s) 1234
Csp6I GTAC 4 cut(s) 712, 1201, 1544, 1721
CviQI GTAC 4 cut(s) 712, 1201, 1544, 1721
DdeI CTNAG 9 cut(s) 66, 102, 234, 243, 261, 984, 999, 1347, 1439
DpnI GATC 5 cut(s) 602, 885, 1167, 1374, 1626
DpnII GATC 5 cut(s) 600, 883, 1165, 1372, 1624
DriI GACNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 1032
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 1032
EciI GGCGGA 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 522
Eco147I AGGCCT 2 cut(s) 167, 1566
Eco47I GGWCC 3 cut(s) 1091, 1333, 1699
Eco47III AGCGCT 1 cut(s) 909
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 1181
EcoO109I RGGNCCY 2 cut(s) 1091, 1699
EcoRII CCWGG 3 cut(s) 177, 1274, 1758
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FauI CCCGC 2 cut(s) 836, 1413
FbaI TGATCA 1 cut(s) 600
FblI GTMKAC 1 cut(s) 1417
Fnu4HI GCNGC 6 cut(s) 203, 485, 743, 906, 1152, 1599
FokI GGATG 9 cut(s) 138, 290, 464, 571, 866, 991, 1199, 1256, 1762
Fsp4HI GCNGC 6 cut(s) 203, 485, 743, 906, 1152, 1599
FspBI CTAG 5 cut(s) 267, 894, 941, 1191, 1724
GlaI GCGC 3 cut(s) 789, 909, 1287
GluI GCNGC 6 cut(s) 203, 485, 743, 906, 1152, 1599
GsaI CCCAGC 2 cut(s) 741, 1142
GsuI CTGGAG 2 cut(s) 429, 827
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 4 cut(s) 167, 177, 1006, 1566
HgaI GACGC 1 cut(s) 1234
HhaI GCGC 3 cut(s) 790, 910, 1288
Hin6I GCGC 3 cut(s) 788, 908, 1286
HinP1I GCGC 3 cut(s) 788, 908, 1286
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 2 cut(s) 23, 1610
HinfI GANTC 9 cut(s) 80, 116, 257, 544, 550, 913, 927, 1506, 1736
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 4 cut(s) 405, 819, 1418, 1544
Hpy188I TCNGA 7 cut(s) 103, 262, 304, 393, 549, 708, 1708
Hpy188III TCNNGA 5 cut(s) 370, 931, 986, 1309, 1528
Hpy8I GTNNAC 4 cut(s) 405, 819, 1418, 1544
Hpy99I CGWCG 2 cut(s) 427, 1640
HpyCH4III ACNGT 2 cut(s) 14, 1720
HpyF10VI GCNNNNNNNGC 8 cut(s) 183, 208, 239, 1024, 1148, 1292, 1604, 1760
HpyF3I CTNAG 9 cut(s) 66, 102, 234, 243, 261, 984, 999, 1347, 1439
HspAI GCGC 3 cut(s) 788, 908, 1286
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 5 cut(s) 600, 883, 1165, 1372, 1624
LmnI GCTCC 4 cut(s) 70, 378, 724, 750
Lsp1109I GCAGC 6 cut(s) 214, 496, 729, 917, 1138, 1610
LweI GCATC 7 cut(s) 160, 220, 268, 442, 708, 1177, 1699
MaeI CTAG 5 cut(s) 267, 894, 941, 1191, 1724
MaeIII GTNAC 2 cut(s) 640, 1378
MalI GATC 5 cut(s) 602, 885, 1167, 1374, 1626
MboI GATC 5 cut(s) 600, 883, 1165, 1372, 1624
MboII GAAGA 8 cut(s) 36, 747, 750, 1049, 1292, 1474, 1594, 1652
MflI RGATCY 3 cut(s) 883, 1372, 1624
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 8 cut(s) 322, 649, 667, 772, 1011, 1129, 1395, 1516
MlyI GAGTC 3 cut(s) 125, 266, 553
MseI TTAA 9 cut(s) 27, 351, 363, 612, 1010, 1077, 1298, 1362, 1448
MslI CAYNNNNRTG 1 cut(s) 1216
MspR9I CCNGG 3 cut(s) 179, 1276, 1760
Mva1269I GAATGC 2 cut(s) 481, 1154
MvaI CCWGG 3 cut(s) 179, 1276, 1760
MwoI GCNNNNNNNGC 8 cut(s) 183, 208, 239, 1024, 1148, 1292, 1604, 1760
NdeII GATC 5 cut(s) 600, 883, 1165, 1372, 1624
NlaIV GGNNCC 2 cut(s) 885, 1335
NmeAIII GCCGAG 4 cut(s) 153, 202, 280, 460
NspI RCATGY 3 cut(s) 876, 1292, 1690
PaeR7I CTCGAG 1 cut(s) 146
PagI TCATGA 2 cut(s) 1308, 1527
PceI AGGCCT 2 cut(s) 167, 1566
PctI GAATGC 2 cut(s) 481, 1154
PfeI GAWTC 6 cut(s) 80, 550, 913, 927, 1506, 1736
PflMI CCANNNNNTGG 1 cut(s) 1013
PkrI GCNGC 6 cut(s) 204, 486, 744, 907, 1153, 1600
PleI GAGTC 3 cut(s) 124, 265, 552
PpsI GAGTC 3 cut(s) 124, 265, 552
PpuMI RGGWCCY 2 cut(s) 1091, 1699
PshBI ATTAAT 2 cut(s) 1010, 1298
Psp5II RGGWCCY 2 cut(s) 1091, 1699
Psp6I CCWGG 3 cut(s) 177, 1274, 1758
PspFI CCCAGC 2 cut(s) 737, 1138
PspGI CCWGG 3 cut(s) 177, 1274, 1758
PspN4I GGNNCC 2 cut(s) 885, 1335
PspPI GGNCC 3 cut(s) 1091, 1333, 1699
PspPPI RGGWCCY 2 cut(s) 1091, 1699
PspXI VCTCGAGB 1 cut(s) 146
PsuI RGATCY 3 cut(s) 883, 1372, 1624
RsaI GTAC 4 cut(s) 713, 1202, 1545, 1722
RsaNI GTAC 4 cut(s) 712, 1201, 1544, 1721
RseI CAYNNNNRTG 1 cut(s) 1216
SaqAI TTAA 9 cut(s) 27, 351, 363, 612, 1010, 1077, 1298, 1362, 1448
SatI GCNGC 6 cut(s) 203, 485, 743, 906, 1152, 1599
Sau3AI GATC 5 cut(s) 600, 883, 1165, 1372, 1624
Sau96I GGNCC 3 cut(s) 1091, 1333, 1699
ScaI AGTACT 1 cut(s) 1722
SchI GAGTC 3 cut(s) 125, 266, 553
ScrFI CCNGG 3 cut(s) 179, 1276, 1760
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 7 cut(s) 160, 220, 268, 442, 708, 1177, 1699
SfcI CTRYAG 1 cut(s) 581
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 3 cut(s) 1091, 1333, 1699
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 1216
SmlI CTYRAG 2 cut(s) 146, 1555
SmoI CTYRAG 2 cut(s) 146, 1555
Sse9I AATT 8 cut(s) 322, 649, 667, 772, 1011, 1129, 1395, 1516
SseBI AGGCCT 2 cut(s) 167, 1566
SsiI CCGC 6 cut(s) 48, 330, 455, 697, 829, 1406
SspMI CTAG 5 cut(s) 267, 894, 941, 1191, 1724
StuI AGGCCT 2 cut(s) 167, 1566
StyD4I CCNGG 3 cut(s) 177, 1274, 1758
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 2 cut(s) 14, 1720
TaqI TCGA 3 cut(s) 140, 147, 425
TasI AATT 8 cut(s) 322, 649, 667, 772, 1011, 1129, 1395, 1516
TatI WGTACW 3 cut(s) 711, 1543, 1720
TfiI GAWTC 6 cut(s) 80, 550, 913, 927, 1506, 1736
Tru1I TTAA 9 cut(s) 27, 351, 363, 612, 1010, 1077, 1298, 1362, 1448
Tru9I TTAA 9 cut(s) 27, 351, 363, 612, 1010, 1077, 1298, 1362, 1448
TscAI CASTG 3 cut(s) 19, 388, 1476
TseI GCWGC 6 cut(s) 202, 484, 742, 905, 1151, 1598
TspRI CASTG 3 cut(s) 19, 388, 1476
Van91I CCANNNNNTGG 1 cut(s) 1013
VpaK11BI GGWCC 3 cut(s) 1091, 1333, 1699
VspI ATTAAT 2 cut(s) 1010, 1298
XagI CCTNNNNNAGG 1 cut(s) 1181
XapI RAATTY 1 cut(s) 667
XceI RCATGY 3 cut(s) 876, 1292, 1690
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 1417
XspI CTAG 5 cut(s) 267, 894, 941, 1191, 1724
ZrmI AGTACT 1 cut(s) 1722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.