Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001469.1

Orthogroup ID

OG0002032

Physical Location & Seq

Genomic Coordinates Reverse (-)

72373 .. 74553

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001469.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgctcaacaattttgtgagggaatgtggggcttcactattagtaacagatttttcacctttaagggaggttcagaaatgtaaagaggaaatatgcaagagggttagtgattttgtgaccgtacatgaagttgatgcccacaatgtggtgcccgtttgggcggcatcggagaagttggagtatagtgctaggactataaggagtaagatcaataaaaggctgcctgagtaccttattgagtttcctacattgcagccaccgattgcaaaatgggtgggtacaagtcccgcgattgattgggatggacttattgatgaagttttaaggaaaggagcagaagttcctgaagtggactggtgcgaacccggagaaaaggcagcaatggaagttttgaagggtagcaaaaatggattcttgacaaaaaggctgaagggttattcattggaccggaataaccctttgaaaccaagaggggtgtctggtctttctccatatttgcattttgggcaaatatctgctcagaggtgtgccttggaggcacgcagtgtccgaaaactcagtcccctggcagtggatgcatttttagaggagttgattgtgcgcagagaacttgctgacaactactgcttttaccagcctcaatatgattcattgcaaggggcatgggaatgggcacgtaagaccttaatggaccatgcttcggataagcgagaacatatttacacgagggagcaattggagaaggcacaaactgctgatcctctctggaatgcctcccaatgtgagatggttcattacgggaagatgcatggttttatgcggatgtattgggcaaaaaagatccttgagtggacaagaggacccgaagaagcccttgaaatatccatatatttaaataacaagtatgaaatggatggaagggatcccaatggatatgttggttgcatgtggtcaatatgtggtgttcacgaccagggttggaaggaacgaccaatttttgggaaaatacgttacatgaactatgcaggctgcaaaaggaaatttgacgttgatggatacgttgcctatgtgcagaggcttggtgcaaccaagaagagaaaactcctactcagtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

372

Amino Acids

42.91

Weight (kDa)

8.53

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12370 AT1G12370 AT1G12370
fragaria_vesca	FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790
malus_domestica	MD04G1078900.v1.1
prunus_persica	Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1
pyrus_communis	pycom04g07070
rosa_chinensis	RchiOBHm_Chr7g0201341 RchiOBHm_Chr7g0201371 RchiOBHm_Chr7g0201391
rosa_laevigata	RLG00000003679
rosa_multiflora	Rmu_co8093880.1_g000001 Rmu_co8322589.1_g000001 Rmu_sc0001469.1_g000010 Rmu_sc0001469.1_g000012 Rmu_sc0013971.1_g000001 Rmu_sc0013971.1_g000004 Rmu_sc0024878.1_g000001 Rmu_sc0024878.1_g000004 Rmu_sc0026181.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226330 Rroxscaffold_3G00255330 Rroxscaffold_3G00255340 Rroxscaffold_3G00255350
rosa_rugosa	Rorug07G0062600 Rorug07G0062700
rosa_samantha	Rh7AG190200 Rh7BG192600 Rh7CG200900 Rh7CG201300 Rh7CG201400 Rh7CG201500 Rh7DG195000 Rh7DG195200
rosa_wichuraiana	Rw7G016680 Rw7G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	2 cut(s)	145, 998
AccII	CGCG	1 cut(s)	290
AciI	CCGC	3 cut(s)	161, 288, 820
AclWI	GGATC	4 cut(s)	752, 835, 917, 930
AcsI	RAATTY	1 cut(s)	1040
AcuI	CTGAAG	2 cut(s)	366, 449
AdeI	CACNNNGTG	2 cut(s)	145, 545
AfaI	GTAC	3 cut(s)	123, 230, 280
AfiI	CCNNNNNNNGG	4 cut(s)	145, 571, 700, 998
AgsI	TTSAA	3 cut(s)	394, 463, 878
AjnI	CCWGG	2 cut(s)	564, 972
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AlwI	GGATC	4 cut(s)	752, 835, 917, 930
ApeKI	GCWGC	4 cut(s)	220, 253, 377, 1029
ApoI	RAATTY	1 cut(s)	1040
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	3 cut(s)	445, 691, 860
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	3 cut(s)	445, 691, 860
BaeGI	GKGCMC	2 cut(s)	153, 676
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	724
BbvI	GCAGC	4 cut(s)	207, 265, 389, 1016
BccI	CCATC	4 cut(s)	296, 781, 908, 1046
BciT130I	CCWGG	2 cut(s)	566, 974
BciVI	GTATCC	1 cut(s)	1049
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	1049
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	5 cut(s)	162, 221, 254, 378, 1030
BlsI	GCNGC	5 cut(s)	163, 222, 255, 379, 1031
Bme1390I	CCNGG	3 cut(s)	366, 566, 974
Bme18I	GGWCC	3 cut(s)	445, 691, 860
BmgT120I	GGNCC	3 cut(s)	445, 691, 860
BmiI	GGNNCC	3 cut(s)	150, 862, 924
BmrFI	CCNGG	3 cut(s)	366, 566, 974
BmsI	GCATC	4 cut(s)	124, 173, 565, 795
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	531, 564, 973
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 571, 700, 998
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	3 cut(s)	248, 387, 650
BseBI	CCWGG	2 cut(s)	566, 974
BseDI	CCNNGG	3 cut(s)	531, 564, 973
BseGI	GGATG	4 cut(s)	307, 580, 828, 919
BseLI	CCNNNNNNNGG	4 cut(s)	145, 571, 700, 998
BseMI	GCAATG	3 cut(s)	248, 387, 650
BseMII	CTCAG	3 cut(s)	216, 533, 571
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	602
BseSI	GKGCMC	2 cut(s)	153, 676
BseXI	GCAGC	4 cut(s)	207, 265, 389, 1016
BsgI	GTGCAG	1 cut(s)	1091
Bsh1236I	CGCG	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	366, 448
BslFI	GGGAC	2 cut(s)	270, 546
BslI	CCNNNNNNNGG	4 cut(s)	145, 571, 700, 998
BsmFI	GGGAC	2 cut(s)	270, 546
BsmI	GAATGC	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	153, 676
Bsp143I	GATC	4 cut(s)	207, 757, 840, 922
BspACI	CCGC	3 cut(s)	161, 288, 820
BspCNI	CTCAG	3 cut(s)	217, 532, 570
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	150, 862, 924
BspPI	GGATC	4 cut(s)	752, 835, 917, 930
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	3 cut(s)	248, 387, 650
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	531, 564, 973
BssMI	GATC	4 cut(s)	207, 757, 840, 922
BssSI	CACGAG	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	724
Bst2UI	CCWGG	2 cut(s)	566, 974
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	1088
BstAPI	GCANNNNNTGC	2 cut(s)	575, 752
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	541, 1027
BstDEI	CTNAG	4 cut(s)	225, 519, 557, 1109
BstF5I	GGATG	4 cut(s)	307, 580, 828, 919
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	4 cut(s)	210, 760, 843, 925
BstMBI	GATC	4 cut(s)	207, 757, 840, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	505, 536, 575, 752
BstNI	CCWGG	2 cut(s)	566, 974
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	364, 564, 972
BstSLI	GKGCMC	2 cut(s)	153, 676
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	207, 265, 389, 1016
BstX2I	RGATCY	2 cut(s)	840, 922
BstYI	RGATCY	2 cut(s)	840, 922
BsuI	GTATCC	1 cut(s)	1049
BtsCI	GGATG	4 cut(s)	307, 580, 828, 919
BtsI	GCAGTG	2 cut(s)	550, 576
BtsIMutI	CAGTG	3 cut(s)	550, 576, 1117
Cac8I	GCNNGC	2 cut(s)	541, 1027
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	3 cut(s)	445, 691, 860
Csp6I	GTAC	3 cut(s)	122, 229, 279
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	6 cut(s)	125, 663, 695, 809, 946, 1015
CviJI	RGCY	8 cut(s)	32, 220, 256, 427, 637, 872, 1029, 1078
CviKI_1	RGCY	8 cut(s)	32, 220, 256, 427, 637, 872, 1029, 1078
CviQI	GTAC	3 cut(s)	122, 229, 279
DdeI	CTNAG	4 cut(s)	225, 519, 557, 1109
DpnI	GATC	4 cut(s)	209, 759, 842, 924
DpnII	GATC	4 cut(s)	207, 757, 840, 922
DraI	TTTAAA	1 cut(s)	894
DraIII	CACNNNGTG	2 cut(s)	145, 545
Eam1104I	CTCTTC	1 cut(s)	1088
EarI	CTCTTC	1 cut(s)	1088
Eco130I	CCWWGG	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	445, 691, 860
Eco57I	CTGAAG	2 cut(s)	366, 449
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	564, 972
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	2 cut(s)	580, 810
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	6 cut(s)	128, 666, 698, 812, 949, 1018
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	2 cut(s)	270, 546
FatI	CATG	6 cut(s)	124, 662, 694, 808, 945, 1014
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	162, 221, 254, 378, 1030
FokI	GGATG	4 cut(s)	314, 587, 835, 926
Fsp4HI	GCNGC	5 cut(s)	162, 221, 254, 378, 1030
FspBI	CTAG	1 cut(s)	189
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	5 cut(s)	162, 221, 254, 378, 1030
HapII	CCGG	2 cut(s)	366, 448
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	6 cut(s)	128, 666, 698, 812, 949, 1018
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HinfI	GANTC	2 cut(s)	411, 647
HpaII	CCGG	2 cut(s)	366, 448
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	3 cut(s)	352, 852, 967
Hpy188I	TCNGA	5 cut(s)	75, 169, 522, 551, 703
Hpy188III	TCNNGA	4 cut(s)	344, 415, 766, 968
Hpy8I	GTNNAC	3 cut(s)	352, 852, 967
HpyAV	CCTTC	5 cut(s)	388, 424, 736, 912, 976
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	4 cut(s)	676, 1009, 1047, 1059
HpyF10VI	GCNNNNNNNGC	4 cut(s)	505, 536, 575, 752
HpyF3I	CTNAG	4 cut(s)	225, 519, 557, 1109
HpySE526I	ACGT	4 cut(s)	676, 1009, 1047, 1059
Hsp92II	CATG	6 cut(s)	128, 666, 698, 812, 949, 1018
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	4 cut(s)	207, 757, 840, 922
LmnI	GCTCC	2 cut(s)	332, 730
Lsp1109I	GCAGC	4 cut(s)	207, 265, 389, 1016
LweI	GCATC	4 cut(s)	124, 173, 565, 795
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	4 cut(s)	676, 1009, 1047, 1059
MaeIII	GTNAC	3 cut(s)	43, 115, 1010
MalI	GATC	4 cut(s)	209, 759, 842, 924
MboI	GATC	4 cut(s)	207, 757, 840, 922
MboII	GAAGA	3 cut(s)	814, 878, 1105
MfeI	CAATTG	1 cut(s)	734
MflI	RGATCY	2 cut(s)	840, 922
MhlI	GDGCHC	2 cut(s)	153, 676
MluCI	AATT	4 cut(s)	10, 734, 993, 1040
MmeI	TCCRAC	2 cut(s)	156, 959
Mph1103I	ATGCAT	2 cut(s)	580, 810
MseI	TTAA	4 cut(s)	62, 323, 686, 893
MslI	CAYNNNNRTG	1 cut(s)	667
MspI	CCGG	2 cut(s)	366, 448
MspR9I	CCNGG	3 cut(s)	366, 566, 974
MunI	CAATTG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	2 cut(s)	566, 974
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	505, 536, 575, 752
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	207, 757, 840, 922
NlaIII	CATG	6 cut(s)	128, 666, 698, 812, 949, 1018
NlaIV	GGNNCC	3 cut(s)	150, 862, 924
NmuCI	GTSAC	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	602
NsiI	ATGCAT	2 cut(s)	580, 810
NspI	RCATGY	1 cut(s)	949
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PctI	GAATGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	411, 647
PflMI	CCANNNNNTGG	2 cut(s)	145, 998
PkrI	GCNGC	5 cut(s)	163, 222, 255, 379, 1031
Ppu21I	YACGTR	1 cut(s)	677
PpuMI	RGGWCCY	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	564, 972
PspGI	CCWGG	2 cut(s)	564, 972
PspN4I	GGNNCC	3 cut(s)	150, 862, 924
PspPI	GGNCC	3 cut(s)	445, 691, 860
PspPPI	RGGWCCY	1 cut(s)	860
PsuI	RGATCY	2 cut(s)	840, 922
RsaI	GTAC	3 cut(s)	123, 230, 280
RsaNI	GTAC	3 cut(s)	122, 229, 279
RseI	CAYNNNNRTG	1 cut(s)	667
SaqAI	TTAA	4 cut(s)	62, 323, 686, 893
SatI	GCNGC	5 cut(s)	162, 221, 254, 378, 1030
Sau3AI	GATC	4 cut(s)	207, 757, 840, 922
Sau96I	GGNCC	3 cut(s)	445, 691, 860
ScrFI	CCNGG	3 cut(s)	366, 566, 974
SduI	GDGCHC	2 cut(s)	153, 676
SetI	ASST	9 cut(s)	61, 72, 234, 527, 679, 686, 1012, 1050, 1062
SfaNI	GCATC	4 cut(s)	124, 173, 565, 795
SinI	GGWCC	3 cut(s)	445, 691, 860
SmiI	ATTTAAAT	1 cut(s)	894
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	4 cut(s)	10, 734, 993, 1040
SsiI	CCGC	3 cut(s)	161, 288, 820
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	3 cut(s)	364, 564, 972
StyI	CCWWGG	1 cut(s)	531
SwaI	ATTTAAAT	1 cut(s)	894
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	4 cut(s)	679, 1012, 1050, 1062
TasI	AATT	4 cut(s)	10, 734, 993, 1040
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	411, 647
Tru1I	TTAA	4 cut(s)	62, 323, 686, 893
Tru9I	TTAA	4 cut(s)	62, 323, 686, 893
TscAI	CASTG	3 cut(s)	550, 576, 1117
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	220, 253, 377, 1029
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	7 cut(s)	141, 330, 429, 639, 782, 921, 1031
TspRI	CASTG	3 cut(s)	550, 576, 1117
Van91I	CCANNNNNTGG	2 cut(s)	145, 998
VpaK11BI	GGWCC	3 cut(s)	445, 691, 860
XapI	RAATTY	1 cut(s)	1040
XceI	RCATGY	1 cut(s)	949
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	2 cut(s)	580, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.