Rroxscaffold_3G00226330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002032
Physical Location & Seq
Forward (+)
9813534 .. 9814181
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226330.1

Sequence Viewer

Length: 618 bp
ATGCAGGTGGCTGATCCTGATATGCGTTTTGGGAATGGAGGGCTTGAGTCGGTGCCAAGACGTGTTGGCCTTTGCCTCAACATGTACTCACTGATGGCCAGCGGACCCAAAATACCCCAATTCCTCCAACACTTAACCGAAACTCGAAGAGTAAATCAAACCTCTTACCTCGGTCATCGCCGATTGGGACCAAATTCGCTGGAAATTGCAGAAAACCCGCCGGCAGCTCCGAAGCTTCCAAGTTTTAATTCTCTCTCCAAAATAGGATCCAAACCAGCCGGCAGCTCCAAAGCTTCCAACTACCGCTACCAGTCTCGCCAGCAGTCGTCGTCGGAGTCGGAAAATCTGACTGGAAACCGCCATGCAGTGGAAACTTTCGAGCCTCAGGCCGCCGTCACAGCTCTCCCGTTTGAACCAAAGGGAACAAAGCACCGGTTCGCACCTCCGAGACGATTCCAACGTCACCGGTCTGCCGAACAGATGTCGCCGGAATCGAAAGGAGGAATCGGGTCACCGTTATGGGTTTCGGGGTCGAGGAACCGGGTCGACCAGTCTGGCTTCTTCTACATCGTCTCGATATTTATTAATGATACACGGCCCAGATCAATCGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.69

Weight (kDa)

10.3

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 1 cut(s) 546
AciI CCGC 5 cut(s) 102, 218, 304, 358, 390
AclWI GGATC 3 cut(s) 8, 261, 274
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 2 cut(s) 61, 81
AgeI ACCGGT 2 cut(s) 432, 465
AgsI TTSAA 1 cut(s) 413
AjiI CACGTC 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 5 cut(s) 227, 235, 285, 293, 401
AluI AGCT 5 cut(s) 227, 235, 285, 293, 401
Alw26I GTCTC 3 cut(s) 318, 442, 577
AlwI GGATC 3 cut(s) 8, 261, 274
AoxI GGCC 4 cut(s) 67, 96, 387, 596
ApeKI GCWGC 2 cut(s) 224, 282
ApoI RAATTY 1 cut(s) 193
AseI ATTAAT 1 cut(s) 585
AsiGI ACCGGT 2 cut(s) 432, 465
AspS9I GGNCC 3 cut(s) 104, 188, 597
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 455, 504
AvaII GGWCC 2 cut(s) 104, 188
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 236, 294
BccI CCATC 1 cut(s) 88
BceAI ACGGC 2 cut(s) 377, 611
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 3 cut(s) 318, 442, 577
BisI GCNGC 3 cut(s) 225, 283, 390
BlsI GCNGC 3 cut(s) 226, 284, 391
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 2 cut(s) 104, 188
BmgBI CACGTC 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 104, 188, 597
BmiI GGNNCC 5 cut(s) 54, 106, 189, 268, 539
BmrFI CCNGG 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 2 cut(s) 432, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 4 cut(s) 220, 278, 432, 465
Bse1I ACTGG 3 cut(s) 310, 355, 550
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 3 cut(s) 310, 355, 550
BseXI GCAGC 2 cut(s) 236, 294
BshFI GGCC 4 cut(s) 69, 98, 389, 598
BshNI GGYRCC 1 cut(s) 52
BshTI ACCGGT 2 cut(s) 432, 465
BsiSI CCGG 6 cut(s) 221, 279, 433, 466, 488, 541
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 318, 442, 577
BsmBI CGTCTC 2 cut(s) 442, 577
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 4 cut(s) 69, 98, 389, 598
Bsp143I GATC 3 cut(s) 13, 266, 602
BspACI CCGC 5 cut(s) 102, 218, 304, 358, 390
BspANI GGCC 4 cut(s) 69, 98, 389, 598
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 5 cut(s) 54, 106, 189, 268, 539
BspPI GGATC 3 cut(s) 8, 261, 274
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 4 cut(s) 220, 278, 432, 465
BsrI ACTGG 3 cut(s) 310, 355, 550
BssAI RCCGGY 4 cut(s) 220, 278, 432, 465
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 13, 266, 602
Bst4CI ACNGT 1 cut(s) 516
Bst6I CTCTTC 1 cut(s) 142
BstC8I GCNNGC 4 cut(s) 100, 222, 280, 320
BstDEI CTNAG 1 cut(s) 384
BstEII GGTNACC 1 cut(s) 510
BstKTI GATC 3 cut(s) 16, 269, 605
BstMAI GTCTC 3 cut(s) 318, 442, 577
BstMBI GATC 3 cut(s) 13, 266, 602
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 236, 294
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 4 cut(s) 69, 98, 389, 598
BtgZI GCGATG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 89, 372
Cac8I GCNNGC 4 cut(s) 100, 222, 280, 320
Cfr10I RCCGGY 4 cut(s) 220, 278, 432, 465
Cfr13I GGNCC 3 cut(s) 104, 188, 597
Csp6I GTAC 1 cut(s) 85
CspAI ACCGGT 2 cut(s) 432, 465
CviAII CATG 2 cut(s) 82, 362
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 384
DpnI GATC 3 cut(s) 15, 268, 604
DpnII GATC 3 cut(s) 13, 266, 602
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 104, 188
Eco81I CCTNAGG 1 cut(s) 384
Eco91I GGTNACC 1 cut(s) 510
EcoO65I GGTNACC 1 cut(s) 510
Esp3I CGTCTC 2 cut(s) 442, 577
FaeI CATG 2 cut(s) 85, 365
FaiI YATR 4 cut(s) 23, 83, 363, 520
FaqI GGGAC 1 cut(s) 201
FatI CATG 2 cut(s) 81, 361
FauI CCCGC 1 cut(s) 225
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 225, 283, 390
Fsp4HI GCNGC 3 cut(s) 225, 283, 390
GluI GCNGC 3 cut(s) 225, 283, 390
HaeIII GGCC 4 cut(s) 69, 98, 389, 598
HapII CCGG 6 cut(s) 221, 279, 433, 466, 488, 541
Hin1II CATG 2 cut(s) 85, 365
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 233, 291
HinfI GANTC 5 cut(s) 47, 335, 453, 491, 504
HpaII CCGG 6 cut(s) 221, 279, 433, 466, 488, 541
HphI GGTGA 2 cut(s) 455, 504
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 5 cut(s) 231, 334, 340, 348, 447
Hpy188III TCNNGA 2 cut(s) 17, 574
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 2 cut(s) 331, 334
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 2 cut(s) 61, 460
HpyCH4V TGCA 3 cut(s) 4, 209, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 61, 460
Hsp92II CATG 2 cut(s) 85, 365
KroI GCCGGC 2 cut(s) 220, 278
KroNI GCCGGC 2 cut(s) 222, 280
Kzo9I GATC 3 cut(s) 13, 266, 602
LmnI GCTCC 2 cut(s) 232, 290
Lsp1109I GCAGC 2 cut(s) 236, 294
MaeII ACGT 2 cut(s) 61, 460
MaeIII GTNAC 4 cut(s) 394, 461, 510, 611
MalI GATC 3 cut(s) 15, 268, 604
MboI GATC 3 cut(s) 13, 266, 602
MboII GAAGA 2 cut(s) 159, 553
MflI RGATCY 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 4 cut(s) 119, 193, 204, 247
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 2 cut(s) 56, 344
MmeI TCCRAC 5 cut(s) 151, 312, 318, 321, 481
MnlI CCTC 9 cut(s) 32, 86, 134, 172, 179, 393, 453, 494, 528
Mox20I TGGCCA 1 cut(s) 98
MroNI GCCGGC 2 cut(s) 220, 278
MscI TGGCCA 1 cut(s) 98
MseI TTAA 3 cut(s) 134, 246, 585
MslI CAYNNNNRTG 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 6 cut(s) 221, 279, 433, 466, 488, 541
MspR9I CCNGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 398
NaeI GCCGGC 2 cut(s) 222, 280
NciI CCSGG 1 cut(s) 542
NdeII GATC 3 cut(s) 13, 266, 602
NgoMIV GCCGGC 2 cut(s) 220, 278
NlaIII CATG 2 cut(s) 85, 365
NlaIV GGNNCC 5 cut(s) 54, 106, 189, 268, 539
NmuCI GTSAC 4 cut(s) 394, 461, 510, 611
NspI RCATGY 1 cut(s) 85
PciI ACATGT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 457, 491
PdiI GCCGGC 2 cut(s) 222, 280
PfeI GAWTC 3 cut(s) 453, 491, 504
PflMI CCANNNNNTGG 1 cut(s) 367
PinAI ACCGGT 2 cut(s) 432, 465
PkrI GCNGC 3 cut(s) 226, 284, 391
PleI GAGTC 2 cut(s) 55, 343
PpsI GAGTC 2 cut(s) 55, 343
PscI ACATGT 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 585
PspEI GGTNACC 1 cut(s) 510
PspN4I GGNNCC 5 cut(s) 54, 106, 189, 268, 539
PspPI GGNCC 3 cut(s) 104, 188, 597
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 517
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 3 cut(s) 134, 246, 585
SatI GCNGC 3 cut(s) 225, 283, 390
Sau3AI GATC 3 cut(s) 13, 266, 602
Sau96I GGNCC 3 cut(s) 104, 188, 597
SchI GAGTC 2 cut(s) 56, 344
ScrFI CCNGG 1 cut(s) 542
SinI GGWCC 2 cut(s) 104, 188
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 4 cut(s) 119, 193, 204, 247
SsiI CCGC 5 cut(s) 102, 218, 304, 358, 390
StyD4I CCNGG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 2 cut(s) 64, 463
TaqI TCGA 6 cut(s) 145, 378, 494, 533, 546, 575
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 119, 193, 204, 247
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 3 cut(s) 453, 491, 504
Tru1I TTAA 3 cut(s) 134, 246, 585
Tru9I TTAA 3 cut(s) 134, 246, 585
TscAI CASTG 2 cut(s) 96, 372
TseFI GTSAC 4 cut(s) 394, 461, 510, 611
TseI GCWGC 2 cut(s) 224, 282
Tsp45I GTSAC 4 cut(s) 394, 461, 510, 611
TspRI CASTG 2 cut(s) 96, 372
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 104, 188
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.