Prupe.5G080300_v2.0.a1

photo-lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
9391571 .. 9395219
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G080300.2

Sequence Viewer

Length: 1476 bp
ATGGCCGCTAACTCCGCAGCCGTGCAACCGGGTCGGGTTCGGATTCTGAAAGAAGCGTCCAAATCGGCGGGTCAAAATGTGGGTCCCGTGGTTTACTGGATGTTCAGAGACCAAAGGGTTAGAGACAATTGGGCCTTGATCCACGCCGTTGAGCAGGCCCACAAGGCCAATGTCCCCGTGGCTGTGGCGTTCAATCTGTTTGATCAGTTTCTTGGAGCCAAAGCCCGCCAGTTAGGGTTTATGCTGAGGGGTTTGCGACAATTGCATCGTGATCTTGAAGAAACGCATCAAATTCCATTTTTTCTCTTCCGGGGAAATGCTGAGAACACTATACCCAATTTTGTGAGTGAATGTGGGGCTTCACTTTTAGTAACGGACTTCTCACCCTTACGGGAAGTTCGGAAATGTAAAGAGGAAATTTGCAAGAGGGTTAGTGATTTTGTGACAATACATGAAGTTGATGCACACAATGTGGTGCCCCTTTGGGCGGCATCAGAGAAGTTGGAGTATAGTGCTAGGACTATAAGGAGTAAGATAAACAAAAAGCTTCCAGAGTACCTAATCGAATTTCCTATGCTGCAGCCACCAGTTACAAAATGGGTGGGCACTAGTCGATTGATTGACTGGGATAGCCTCATTGACGAAGTTTTGAGGAAAGGAGCAGAAGTTCCTGAAATCGATTGGTGTGAACCGGGAGAAAAGGCGGCAATGGAAGTTTTGATGGGTAGCAAAAATGGGTTCTTGACGAAAAGGTTGAAGGGTTATTCATCAGACCGGAATAACCCTTTGAAACCAAGAGGTCTCTCGGGTCTTTCTCCATATTTGCATTTTGGGCAAATATCTGCACAGAGGTGCGCCTTAGAGGCACGTAGCATCCGGAAACTCTGTCCTGAGGCAGTCGATGCATTTGTAGAGGAGTTGATTGTGCGCCGAGAACTTGCCGATAACTTCTGCTTCTACCAGCCTCATTATGATTCATTACAAGGGGCGTGGGAATGGGCACGTAAGACTTTGATGGACCATGCTTTTGATCAGCGTGAACATATTTACACTAAGGAGCAATTGGAGAAGGCACAAACAGCCGATCCTCTCTGGAATGCCTCTCAATTGGAGATGGTTTATTATGGGAAGATGCATGGTTTTATGCGGATGTATTGGGCAAAAAAGATTCTTGAGTGGACAAGAGGACCTGAAGAAGCCCTTGAAATATCCATATACCTAAATAACAAGTATGAAATAGATGGAAGGGATCCGAATGGGTATGTTGGTTGCATGTGGTCAGTATGTGGTGTTCACGACCAGGGTTGGAAGGAACGGCCAATTTTTGGGAAAATACGTTACATGAACTATGCAGGCTGCAAAAGGAAATTTGATGTGGATGGATACATTTCCTATGTAAAGAGGCTTGGTGAAACCAAGAAGAGAAAAGCAGAAAGTCTACTTGGTAGAAAGGCAAAAGAACTCTGCACTTATTAG

Protein Analysis

492

Amino Acids

56.6

Weight (kDa)

8.91

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 1325
AccI GTMKAC 1 cut(s) 1438
AccIII TCCGGA 1 cut(s) 876
AciI CCGC 7 cut(s) 6, 15, 68, 226, 488, 704, 1147
AclWI GGATC 4 cut(s) 133, 1079, 1244, 1257
AcoI YGGCCR 2 cut(s) 3, 1316
AcsI RAATTY 4 cut(s) 291, 417, 566, 1367
AcuI CTGAAG 1 cut(s) 1212
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 487, 1325
AgsI TTSAA 5 cut(s) 193, 278, 757, 790, 1205
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 1 cut(s) 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 1425, 1457
AleI CACNNNNGTG 1 cut(s) 850
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
AluBI AGCT 1 cut(s) 547
AluI AGCT 1 cut(s) 547
Alw26I GTCTC 3 cut(s) 102, 117, 806
AlwI GGATC 4 cut(s) 133, 1079, 1244, 1257
Ama87I CYCGRG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 876
AoxI GGCC 5 cut(s) 3, 132, 156, 165, 1316
ApeKI GCWGC 4 cut(s) 17, 577, 580, 1356
ApoI RAATTY 4 cut(s) 291, 417, 566, 1367
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 1010, 1042
AspLEI GCGC 2 cut(s) 857, 930
AspS9I GGNCC 5 cut(s) 83, 132, 157, 1018, 1187
AsuC2I CCSGG 3 cut(s) 30, 311, 693
AsuHPI GGTGA 2 cut(s) 375, 1421
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 3 cut(s) 83, 1018, 1187
AxyI CCTNAGG 1 cut(s) 891
BaeGI GKGCMC 3 cut(s) 480, 608, 1003
BamHI GGATCC 1 cut(s) 1249
BanI GGYRCC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 29, 564, 592, 1343
BccI CCATC 5 cut(s) 715, 1009, 1108, 1235, 1373
BceAI ACGGC 3 cut(s) 5, 131, 1331
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 1301
BciVI GTATCC 1 cut(s) 1376
BclI TGATCA 2 cut(s) 202, 1030
BcnI CCSGG 3 cut(s) 30, 311, 693
BcoDI GTCTC 3 cut(s) 102, 117, 806
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 2 cut(s) 516, 609
BfmI CTRYAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 1376
BglI GCCNNNNNGGC 2 cut(s) 164, 863
BisI GCNGC 7 cut(s) 6, 18, 489, 578, 581, 705, 1357
BlsI GCNGC 7 cut(s) 7, 19, 490, 579, 582, 706, 1358
Bme1390I CCNGG 4 cut(s) 30, 311, 693, 1301
Bme18I GGWCC 3 cut(s) 83, 1018, 1187
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 5 cut(s) 83, 132, 157, 1018, 1187
BmiI GGNNCC 5 cut(s) 84, 85, 217, 477, 1251
BmrFI CCNGG 4 cut(s) 30, 311, 693, 1301
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 7 cut(s) 274, 295, 451, 500, 882, 892, 1122
BmuI ACTGGG 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 1193
BpuMI CCSGG 3 cut(s) 30, 311, 693
Bsa29I ATCGAT 1 cut(s) 678
BsaAI YACGTR 2 cut(s) 869, 1004
BsaI GGTCTC 2 cut(s) 102, 806
BsaJI CCNNGG 4 cut(s) 87, 177, 310, 1300
BsaWI WCCGGW 2 cut(s) 774, 876
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 1325
Bse1I ACTGG 4 cut(s) 101, 229, 587, 629
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 876
BseBI CCWGG 1 cut(s) 1301
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 4 cut(s) 87, 177, 310, 1300
BseGI GGATG 4 cut(s) 105, 873, 1155, 1384
BseLI CCNNNNNNNGG 2 cut(s) 487, 1325
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 3 cut(s) 236, 312, 882
BseNI ACTGG 4 cut(s) 101, 229, 587, 629
BseRI GAGGAG 1 cut(s) 929
BseSI GKGCMC 3 cut(s) 480, 608, 1003
BseXI GCAGC 4 cut(s) 29, 564, 592, 1343
BsgI GTGCAG 2 cut(s) 828, 1450
BshFI GGCC 5 cut(s) 5, 134, 158, 167, 1318
BshNI GGYRCC 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 5 cut(s) 29, 310, 692, 775, 877
BslFI GGGAC 2 cut(s) 69, 158
BslI CCNNNNNNNGG 2 cut(s) 487, 1325
BsmAI GTCTC 3 cut(s) 102, 117, 806
BsmFI GGGAC 2 cut(s) 69, 158
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 5 cut(s) 5, 134, 158, 167, 1318
Bso31I GGTCTC 2 cut(s) 102, 806
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 480, 608, 1003
Bsp13I TCCGGA 1 cut(s) 876
Bsp143I GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
BspACI CCGC 7 cut(s) 6, 15, 68, 226, 488, 704, 1147
BspANI GGCC 5 cut(s) 5, 134, 158, 167, 1318
BspCNI CTCAG 3 cut(s) 237, 313, 883
BspDI ATCGAT 1 cut(s) 678
BspEI TCCGGA 1 cut(s) 876
BspLI GGNNCC 5 cut(s) 84, 85, 217, 477, 1251
BspMAI CTGCAG 1 cut(s) 582
BspPI GGATC 4 cut(s) 133, 1079, 1244, 1257
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 102, 806
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 4 cut(s) 101, 229, 587, 629
BssECI CCNNGG 4 cut(s) 87, 177, 310, 1300
BssMI GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
Bst2UI CCWGG 1 cut(s) 1301
Bst6I CTCTTC 2 cut(s) 311, 1415
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBAI YACGTR 2 cut(s) 869, 1004
BstC8I GCNNGC 3 cut(s) 156, 226, 1354
BstDEI CTNAG 5 cut(s) 245, 321, 859, 891, 1053
BstDSI CCRYGG 2 cut(s) 87, 177
BstF5I GGATG 4 cut(s) 105, 873, 1155, 1384
BstHHI GCGC 2 cut(s) 857, 930
BstKTI GATC 6 cut(s) 141, 205, 274, 1033, 1087, 1252
BstMAI GTCTC 3 cut(s) 102, 117, 806
BstMBI GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
BstMWI GCNNNNNNNGC 7 cut(s) 14, 164, 262, 832, 863, 902, 1079
BstNI CCWGG 1 cut(s) 1301
BstNSI RCATGY 1 cut(s) 1276
BstSCI CCNGG 4 cut(s) 28, 309, 691, 1299
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 3 cut(s) 480, 608, 1003
BstV1I GCAGC 4 cut(s) 29, 564, 592, 1343
BstX2I RGATCY 1 cut(s) 1249
BstYI RGATCY 1 cut(s) 1249
Bsu15I ATCGAT 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 891
BsuI GTATCC 1 cut(s) 1376
BsuRI GGCC 5 cut(s) 5, 134, 158, 167, 1318
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 2 cut(s) 87, 177
BtsCI GGATG 4 cut(s) 105, 873, 1155, 1384
Cac8I GCNNGC 3 cut(s) 156, 226, 1354
CfoI GCGC 2 cut(s) 857, 930
Cfr13I GGNCC 5 cut(s) 83, 132, 157, 1018, 1187
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 556
CspCI CAANNNNNGTGG 4 cut(s) 582, 617, 971, 1006
CviAII CATG 5 cut(s) 452, 1022, 1136, 1273, 1342
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 5 cut(s) 245, 321, 859, 891, 1053
DpnI GATC 6 cut(s) 140, 204, 273, 1032, 1086, 1251
DpnII GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
DraIII CACNNNGTG 1 cut(s) 472
EaeI YGGCCR 2 cut(s) 3, 1316
Eam1104I CTCTTC 2 cut(s) 311, 1415
EarI CTCTTC 2 cut(s) 311, 1415
Eco31I GGTCTC 2 cut(s) 102, 806
Eco47I GGWCC 3 cut(s) 83, 1018, 1187
Eco57I CTGAAG 1 cut(s) 1212
Eco81I CCTNAGG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 805
EcoO109I RGGNCCY 2 cut(s) 83, 1187
EcoRII CCWGG 1 cut(s) 1299
EcoT22I ATGCAT 2 cut(s) 907, 1137
FaeI CATG 5 cut(s) 455, 1025, 1139, 1276, 1345
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 2 cut(s) 69, 158
FatI CATG 5 cut(s) 451, 1021, 1135, 1272, 1341
FauI CCCGC 2 cut(s) 61, 233
FbaI TGATCA 2 cut(s) 202, 1030
FblI GTMKAC 1 cut(s) 1438
Fnu4HI GCNGC 7 cut(s) 6, 18, 489, 578, 581, 705, 1357
FokI GGATG 4 cut(s) 112, 860, 1162, 1391
Fsp4HI GCNGC 7 cut(s) 6, 18, 489, 578, 581, 705, 1357
FspBI CTAG 2 cut(s) 516, 609
GlaI GCGC 2 cut(s) 856, 929
GluI GCNGC 7 cut(s) 6, 18, 489, 578, 581, 705, 1357
HaeIII GGCC 5 cut(s) 5, 134, 158, 167, 1318
HapII CCGG 5 cut(s) 29, 310, 692, 775, 877
HgaI GACGC 1 cut(s) 45
HhaI GCGC 2 cut(s) 857, 930
Hin1II CATG 5 cut(s) 455, 1025, 1139, 1276, 1345
Hin6I GCGC 2 cut(s) 855, 928
HinP1I GCGC 2 cut(s) 855, 928
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 3 cut(s) 43, 974, 1168
HpaII CCGG 5 cut(s) 29, 310, 692, 775, 877
HphI GGTGA 2 cut(s) 375, 1421
Hpy166II GTNNAC 6 cut(s) 94, 689, 1040, 1179, 1294, 1439
Hpy188I TCNGA 7 cut(s) 42, 48, 107, 402, 496, 772, 1254
Hpy8I GTNNAC 6 cut(s) 94, 689, 1040, 1179, 1294, 1439
HpyAV CCTTC 4 cut(s) 751, 1063, 1239, 1303
HpyCH4IV ACGT 3 cut(s) 868, 1003, 1336
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 164, 262, 832, 863, 902, 1079
HpyF3I CTNAG 5 cut(s) 245, 321, 859, 891, 1053
HpySE526I ACGT 3 cut(s) 868, 1003, 1336
Hsp92II CATG 5 cut(s) 455, 1025, 1139, 1276, 1345
HspAI GCGC 2 cut(s) 855, 928
KflI GGGWCCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 876
Ksp22I TGATCA 2 cut(s) 202, 1030
Kzo9I GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
LmnI GCTCC 3 cut(s) 215, 659, 1057
Lsp1109I GCAGC 4 cut(s) 29, 564, 592, 1343
LweI GCATC 7 cut(s) 274, 295, 451, 500, 882, 892, 1122
MaeI CTAG 2 cut(s) 516, 609
MaeII ACGT 3 cut(s) 868, 1003, 1336
MaeIII GTNAC 4 cut(s) 370, 442, 589, 1337
MalI GATC 6 cut(s) 140, 204, 273, 1032, 1086, 1251
MboI GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
MboII GAAGA 5 cut(s) 290, 298, 1141, 1205, 1432
MfeI CAATTG 4 cut(s) 127, 260, 1061, 1106
MflI RGATCY 1 cut(s) 1249
MhlI GDGCHC 3 cut(s) 480, 608, 1003
MmeI TCCRAC 2 cut(s) 483, 1286
Mph1103I ATGCAT 2 cut(s) 907, 1137
MroI TCCGGA 1 cut(s) 876
MslI CAYNNNNRTG 1 cut(s) 850
MspI CCGG 5 cut(s) 29, 310, 692, 775, 877
MspR9I CCNGG 4 cut(s) 30, 311, 693, 1301
MunI CAATTG 4 cut(s) 127, 260, 1061, 1106
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 1 cut(s) 1301
MwoI GCNNNNNNNGC 7 cut(s) 14, 164, 262, 832, 863, 902, 1079
NciI CCSGG 3 cut(s) 30, 311, 693
NdeII GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
NlaIII CATG 5 cut(s) 455, 1025, 1139, 1276, 1345
NlaIV GGNNCC 5 cut(s) 84, 85, 217, 477, 1251
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 2 cut(s) 907, 1137
NspI RCATGY 1 cut(s) 1276
OliI CACNNNNGTG 1 cut(s) 850
PctI GAATGC 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 43, 974, 1168
PflMI CCANNNNNTGG 1 cut(s) 1325
PkrI GCNGC 7 cut(s) 7, 19, 490, 579, 582, 706, 1358
Ppu21I YACGTR 2 cut(s) 869, 1004
PpuMI RGGWCCY 2 cut(s) 83, 1187
Psp5II RGGWCCY 2 cut(s) 83, 1187
Psp6I CCWGG 1 cut(s) 1299
PspGI CCWGG 1 cut(s) 1299
PspN4I GGNNCC 5 cut(s) 84, 85, 217, 477, 1251
PspPI GGNCC 5 cut(s) 83, 132, 157, 1018, 1187
PspPPI RGGWCCY 2 cut(s) 83, 1187
PsrI GAACNNNNNNTAC 2 cut(s) 1275, 1307
PstI CTGCAG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 1249
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 850
SatI GCNGC 7 cut(s) 6, 18, 489, 578, 581, 705, 1357
Sau3AI GATC 6 cut(s) 138, 202, 271, 1030, 1084, 1249
Sau96I GGNCC 5 cut(s) 83, 132, 157, 1018, 1187
ScrFI CCNGG 4 cut(s) 30, 311, 693, 1301
SduI GDGCHC 3 cut(s) 480, 608, 1003
SfaNI GCATC 7 cut(s) 274, 295, 451, 500, 882, 892, 1122
SfcI CTRYAG 1 cut(s) 578
SfiI GGCCNNNNNGGCC 1 cut(s) 164
SinI GGWCC 3 cut(s) 83, 1018, 1187
SmiMI CAYNNNNRTG 1 cut(s) 850
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
SpeI ACTAGT 1 cut(s) 608
SsiI CCGC 7 cut(s) 6, 15, 68, 226, 488, 704, 1147
SspMI CTAG 2 cut(s) 516, 609
StyD4I CCNGG 4 cut(s) 28, 309, 691, 1299
TaiI ACGT 3 cut(s) 871, 1006, 1339
TaqI TCGA 4 cut(s) 564, 613, 678, 900
TauI GCSGC 3 cut(s) 8, 491, 707
TfiI GAWTC 3 cut(s) 43, 974, 1168
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 4 cut(s) 17, 577, 580, 1356
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 5 cut(s) 468, 756, 966, 1248, 1358
TspGWI ACGGA 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 1325
VpaK11BI GGWCC 3 cut(s) 83, 1018, 1187
XapI RAATTY 4 cut(s) 291, 417, 566, 1367
XceI RCATGY 1 cut(s) 1276
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 594
XmiI GTMKAC 1 cut(s) 1438
XspI CTAG 2 cut(s) 516, 609
Zsp2I ATGCAT 2 cut(s) 907, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.