Rh7CG201500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002032
Physical Location & Seq
Forward (+)
17940321 .. 17946078
5758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG201500.1

Sequence Viewer

Length: 930 bp
ATGATGGGAAGATTGAGCGCTTTAGAAACCTTAGACATAAAACGTTGCCAGTCAATGGAAGTGGTATTTGATGAACGTGGAGAAACTAATGTCGACGAAACACATGGCACATCAACCACTCATTTGAAAGACGGTCAAAATCTAAAGTCAGTGGATGTATTCAATTGTCGCAGATTGAAATACATTTTTCCCGCATCTATGGTAACTAGAGGTCTTCAACAGCTGCAAAAGATGAACGTGCGTCATTGTCATTGGATGGAGAGCGTTGTTGCCAAGGAAGATGGGACTCTAGAATCATTAAGGCATCCCAACTTTGTGTTCCCAAAAGCTGAAGCTATGATTTTTGAATCTATGAAACGGCTTAAGACCTTCTATCCCGGAATGTATATTTCCAAGTGGCCATTGCTCAACCAGTTCCGCTTTGTAGGTGAAGGGGAGATTTTTGCTGCAGAACTATCAGTCTTTCAAGAAAGGCAAATGCATGCTCCAACTAAACAACCTTTCTTGCTAATTGATAAGGATTCATTCCCTGTCTTGGAATATTTGGGGGTGTCTACCGAGGAGATTTTGTATGGTCCATCTTCATCCCCAGTAGAGTCGATCTTTAGCAAACTGAAATCTATTCATTTTGATTGGAGTGAACCCTGCGGCGAGCATGCGGCATTGCCTTCCCTTCGGAAATTGCCTAATGTGAAAGTCTACTATGCCCAAAATATTTGTGGAAAAAGGAAATGCTCGTGGTCCCTCTATAACAGGTGGGACCCTCCTCTCAGGGTTATGTGTTTTCCAGATCTCCGATGTGAATGTGAACGTGAGGAATCAGAACGTCTTGCGTGGGGCATCAGCGGCAAACCATTATACATGGATTTGTTTGGATCTTCTAGTAAGCAGAGGCAATTTCGGAAAGTAAAAGAAAATTTTCGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

309

Amino Acids

35.95

Weight (kDa)

8.64

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 44 - 83 1.1e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 3 cut(s) 93, 554, 699
AciI CCGC 5 cut(s) 192, 418, 648, 659, 846
AclI AACGTT 1 cut(s) 43
AclWI GGATC 1 cut(s) 883
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 1 cut(s) 351
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 55, 535
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 6 cut(s) 127, 163, 178, 218, 347, 467
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 3 cut(s) 223, 329, 335
AluI AGCT 3 cut(s) 223, 329, 335
AlwI GGATC 1 cut(s) 883
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 223, 446
ApoI RAATTY 1 cut(s) 916
Asp700I GAANNNNTTC 1 cut(s) 918
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 575, 741, 760
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 3 cut(s) 575, 741, 760
BalI TGGCCA 1 cut(s) 400
BauI CACGAG 1 cut(s) 736
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 210, 433
BccI CCATC 3 cut(s) 250, 275, 586
BceAI ACGGC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 3 cut(s) 207, 290, 882
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 790
BisI GCNGC 5 cut(s) 224, 447, 649, 660, 847
BlsI GCNGC 5 cut(s) 225, 448, 650, 661, 848
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 575, 741, 760
BmgT120I GGNCC 3 cut(s) 575, 741, 760
BmiI GGNNCC 3 cut(s) 743, 761, 762
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 3 cut(s) 203, 313, 849
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 273, 558
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 535
Bse1I ACTGG 3 cut(s) 49, 412, 590
Bse3DI GCAATG 2 cut(s) 401, 662
BseDI CCNNGG 2 cut(s) 273, 558
BseGI GGATG 4 cut(s) 160, 261, 304, 584
BseLI CCNNNNNNNGG 2 cut(s) 55, 535
BseMI GCAATG 2 cut(s) 401, 662
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 3 cut(s) 49, 412, 590
BseRI GAGGAG 2 cut(s) 575, 756
BseXI GCAGC 2 cut(s) 210, 433
BshFI GGCC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 3 cut(s) 298, 727, 773
BslI CCNNNNNNNGG 2 cut(s) 55, 535
BsmFI GGGAC 3 cut(s) 298, 727, 773
BsnI GGCC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 600, 790, 875
BspACI CCGC 5 cut(s) 192, 418, 648, 659, 846
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 783
BspLI GGNNCC 3 cut(s) 743, 761, 762
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 883
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 401, 662
BsrI ACTGG 3 cut(s) 49, 412, 590
BssECI CCNNGG 2 cut(s) 273, 558
BssMI GATC 3 cut(s) 600, 790, 875
BssSI CACGAG 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 736
Bst4CI ACNGT 1 cut(s) 134
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 483, 653, 657
BstDEI CTNAG 2 cut(s) 31, 770
BstF5I GGATG 4 cut(s) 160, 261, 304, 584
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 603, 793, 878
BstMBI GATC 3 cut(s) 600, 790, 875
BstMWI GCNNNNNNNGC 1 cut(s) 846
BstNSI RCATGY 2 cut(s) 485, 659
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 210, 433
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 790, 875
BstYI RGATCY 2 cut(s) 790, 875
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 4 cut(s) 160, 261, 304, 584
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 483, 653, 657
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 575, 741, 760
CseI GACGC 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 4 cut(s) 104, 482, 656, 862
CviJI RGCY 5 cut(s) 223, 329, 335, 361, 400
CviKI_1 RGCY 5 cut(s) 223, 329, 335, 361, 400
DdeI CTNAG 2 cut(s) 31, 770
DpnI GATC 3 cut(s) 602, 792, 877
DpnII GATC 3 cut(s) 600, 790, 875
EaeI YGGCCR 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 575, 741, 760
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 107, 485, 659, 865
FaqI GGGAC 3 cut(s) 298, 727, 773
FatI CATG 4 cut(s) 103, 481, 655, 861
FauI CCCGC 1 cut(s) 199
FblI GTMKAC 3 cut(s) 93, 554, 699
Fnu4HI GCNGC 5 cut(s) 224, 447, 649, 660, 847
FokI GGATG 4 cut(s) 167, 268, 291, 571
Fsp4HI GCNGC 5 cut(s) 224, 447, 649, 660, 847
FspBI CTAG 3 cut(s) 207, 290, 882
GlaI GCGC 1 cut(s) 19
GluI GCNGC 5 cut(s) 224, 447, 649, 660, 847
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 20
Hin1II CATG 4 cut(s) 107, 485, 659, 865
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 6 cut(s) 286, 293, 347, 521, 596, 818
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 5 cut(s) 94, 555, 641, 700, 809
Hpy188I TCNGA 4 cut(s) 678, 797, 823, 903
Hpy188III TCNNGA 3 cut(s) 290, 467, 788
Hpy8I GTNNAC 5 cut(s) 94, 555, 641, 700, 809
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 379, 425, 678, 683
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 5 cut(s) 43, 76, 237, 811, 826
HpyCH4V TGCA 3 cut(s) 226, 449, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 846
HpyF3I CTNAG 2 cut(s) 31, 770
HpySE526I ACGT 5 cut(s) 43, 76, 237, 811, 826
Hsp92II CATG 4 cut(s) 107, 485, 659, 865
HspAI GCGC 1 cut(s) 18
KflI GGGWCCC 1 cut(s) 760
Kzo9I GATC 3 cut(s) 600, 790, 875
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 9 cut(s) 62, 391, 425, 543, 603, 658, 739, 757, 801
Lsp1109I GCAGC 2 cut(s) 210, 433
LweI GCATC 3 cut(s) 203, 313, 849
MaeI CTAG 3 cut(s) 207, 290, 882
MaeII ACGT 5 cut(s) 43, 76, 237, 811, 826
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 602, 792, 877
MboI GATC 3 cut(s) 600, 790, 875
MboII GAAGA 5 cut(s) 21, 206, 290, 573, 870
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 2 cut(s) 790, 875
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 5 cut(s) 163, 510, 680, 896, 916
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 2 cut(s) 280, 605
MmeI TCCRAC 1 cut(s) 512
MnlI CCTC 7 cut(s) 203, 553, 755, 774, 777, 808, 885
Mox20I TGGCCA 1 cut(s) 400
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 918
MscI TGGCCA 1 cut(s) 400
MseI TTAA 2 cut(s) 299, 363
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 2 cut(s) 223, 846
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 846
NciI CCSGG 1 cut(s) 378
NdeII GATC 3 cut(s) 600, 790, 875
NlaIII CATG 4 cut(s) 107, 485, 659, 865
NlaIV GGNNCC 3 cut(s) 743, 761, 762
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 2 cut(s) 485, 659
PaeI GCATGC 2 cut(s) 485, 659
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 4 cut(s) 293, 347, 521, 818
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 5 cut(s) 225, 448, 650, 661, 848
PleI GAGTC 2 cut(s) 280, 604
PpsI GAGTC 2 cut(s) 280, 604
PpuMI RGGWCCY 1 cut(s) 760
Psp1406I AACGTT 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 760
PspN4I GGNNCC 3 cut(s) 743, 761, 762
PspPI GGNCC 3 cut(s) 575, 741, 760
PspPPI RGGWCCY 1 cut(s) 760
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 790, 875
PvuII CAGCTG 1 cut(s) 223
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 299, 363
SatI GCNGC 5 cut(s) 224, 447, 649, 660, 847
Sau3AI GATC 3 cut(s) 600, 790, 875
Sau96I GGNCC 3 cut(s) 575, 741, 760
SchI GAGTC 2 cut(s) 280, 605
ScrFI CCNGG 1 cut(s) 378
SfaNI GCATC 3 cut(s) 203, 313, 849
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 3 cut(s) 575, 741, 760
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 2 cut(s) 485, 659
Sse9I AATT 5 cut(s) 163, 510, 680, 896, 916
SsiI CCGC 5 cut(s) 192, 418, 648, 659, 846
SspI AATATT 2 cut(s) 542, 715
SspMI CTAG 3 cut(s) 207, 290, 882
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 5 cut(s) 46, 79, 240, 814, 829
TaqI TCGA 2 cut(s) 93, 599
TasI AATT 5 cut(s) 163, 510, 680, 896, 916
TauI GCSGC 3 cut(s) 651, 662, 849
TfiI GAWTC 4 cut(s) 293, 347, 521, 818
Tru1I TTAA 2 cut(s) 299, 363
Tru9I TTAA 2 cut(s) 299, 363
TscAI CASTG 1 cut(s) 156
TseI GCWGC 2 cut(s) 223, 446
TspDTI ATGAA 6 cut(s) 87, 248, 368, 513, 573, 614
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 575, 741, 760
XapI RAATTY 1 cut(s) 916
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 2 cut(s) 485, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmiI GTMKAC 3 cut(s) 93, 554, 699
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 3 cut(s) 207, 290, 882
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.