Rw7G016690

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
17190417 .. 17208009
17593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016690.1

Sequence Viewer

Length: 5076 bp
ATGGAGATTGCTACCGGAGCTGCTACCGGAGCTGCTACAGATCTTGTTGGAAAGATTTATTCAACAGTTGGACGGCAAGTGGGTTATTTAATCCACTACAAACGCAACCGTGATGATCTAAAGACTGGAGTGGGCAAATTAAGTGTTGCAAAAGCTAAAGTGAGTGAGAAGATTAACGACGCTGAAGGCAGGGGTGAAATGATTCATGCGCATATCCTCGACTGGCTGAATAATGTGGCTACAATTACTGAGGCGGCAGGCGAACTGTTGAAAGAGAAGCAACAAGCAACTATTGAAGATGCAAACAATTCCCAGCCAAAGACGAAGTGTGTCCATGGGTTTTGTCCAAATCTGATGCTCCTCCGTCGTCGAAGCAAGAACTGGTTGGCATTGATTGAGCGTGTTACCGAGCTGATCAACAAAGAAAAAGAACTTTCTGACATTTCATATGTCCCCCCTAAAGATCTACGGACTGAAGTGAACGAATTAATAGTTGCTAAAGACACGGTAGCTGAGAACGTCCGTGAAGCTGAAGCGAAGGGTGAAAAAATCCATGCAGATGTCCAAGAGTGGCTGAAAAGCGTGGCGGAGATTGTTAAAATGGTAGAAGAATTCTTGAAAGACAAGCAACAACCAGTTGAAGTGACAAGCGATTTTATGAAAGATGAAATCCAAGCAGTTGAAAAGCCAACCACCTCCTTAAGTCATGGAAGCAAGGAATTGGAATTGCTGCAGAGGGTTACTGAACTCTACGAGATGAGAGAATTTTCTGATATTTCATACGTCCCCCCTAAAGATCTACAGACTGAAGTGGGCAAATTAAGGGATTCTAAAGACACGGTAGCTGAGAACGTCAGTGAAGCTGAAGCGAAGGGTGAAAAAATCCATGCAAATGTCCAAAGCTGGCTGAAAAGAGTGGCTGATATTGTTAAAGAGGTAGAAGAATTCTTGAAAGACAAGCACCAATCAATTGAAGAGACAAGCAAATTTATGAAAGATGAAATCCAAGCAATTGAAAAGCCAAACACCTCCTTAAGTCATGGAAGCAAGGAATTGGAATTGCTGCAGAGGGTTGCTGAACTCTACGAGATGAGAGAATTTTCTAAAATTTCATATGTTCTTCCGGCAGAAGATGTATGTATGGCATCTGAGGAAGACTATGAGAAATTTGATTCAAGAACTTCAATACTGGAGGAAATCTTGAAGGAATTGGGAACTTCTAGTACTGAAATGATATTGGTGTATGGTGTTGGCGGTGTGGGAAAGACCACGCTCGTTGAAGAAGTTCTAAGGAAAACTCAAAAAGAGAAATTCTTTGAGGATGCAGTAATGGTACGGGATGTGAAAATTCCAAACTTGGAAGAAATTCAAAATCAAATTGCTGACAAGTTACGTCTGGACATTTCAAAAATTAAGACTCTACCTGGAAGAGCCGATAAAATAAATGAAAGAATCAAGGACAAGAAGACTCTTGTCATTTTTGATGATGTTTGGGGAGAACTTGATTTGAAGGCTGTGGGACTTCCCCACAAATCCACTTGTAGAATATTGTTGACATCCAGAAGTCAACAAGTATTTTCTCATAAGATTAAGCAAAAAGAGTTTCTGCTTGGGGTTTTAGATGAAAAAGAAGCATGGGCTTTATTTGAGAAGAAAGCAGGTGATGTTGTTGCAGATCCTAGTATTCAAAATGTAGCAACTGAAGTAGCCAAAAAATGTGGAGGGTTGCCTGTTTTTATTATCACTGTTGCAAGAGCTTTAGAAAATAAGACTCTACCCATCTGGAAAAATGCCTTGAGATGCCTCGAAAGGTTTGATGAGAAAGGAGACTTAACTGAAAAGGCATACTTGGGTATCGAGTGGAGTTACAAGCAATTGAGTGTCAAGGATCAGCTTCAGCCATTGTTCTTGTTGTGTGGCCTTATTGCAAAGGGCAACTATGCTTCATTTACAGACTTGTTGAAATATAGTATAGGTTTGGGTTTCTTTGAAGACTGTACTGTGGAAGACGCACGAAATGCCTTGTATCAACAGGTTGACAAGCTTAAAAGCTCTTGTCTATTGCTAGACGGTGATGATGGTACATGTGTCAGAATGCACGATCTTGTACATGATGTTGCTAACAGGATTGCATACAGAGATCTTCATGTGTTGGTTGAAGATGGTGGTCATGAGAGGAAAAAATGGCCAAATGAAGATTTCTTTACTGAGTGCAGTAAGATCTGTTTGCCTTGTGGCAATATCGCCACCCTTCCTCAAGTACCTTGGAAATGCCCAAAATTGGAGATGTTTCATTTGCGCGGAGAAGATGATTATGACAGTCAAGAATATTATGACAGGGAAGATGATGATGATTCCTCGCCTAATATACCAAGCAACTTTTTCGTGGAGATGAAAAACCTCAAAGTTTTGGGTTTAAGCAAGGTGCCTCTTCTTCCACTACCCTCATCTTTTTCACTTTTAAAGAATCTCCAAACGTTGTGTTTAGATGGATGCATGTTTGAAGACATTGCTCTAGTTGGAGAGCTAAGAAACTTAGAAGTTCTTAGCCTTGTAAAATCCAAGGTTAAACAATTACCCAAGCAAATTGGGCAGTTAGCCCGTCTGCGGTTGGTGGATTTGTCTGATTGCTGTGAACTTAAAGTGATTCCAGCTGGTGTCATTTCAAATTGGACAAGACTTGAAGACTTGAGAATGAGAAACAGCTTTAAGAATTGGGAGAGTCAACGGTGGCCAAGTAATGCTAGCCTTTTGGAGTTGATGAACTTGCCCAAGCTAACCGCATTAGAAGTACGCATTCCAGATCCTGACATTGTTCTAGCAAAGTTTTTCTCTGACAGGTTGGAAAAATACCAAATATTTATTGAGCCGAAGGGGTGGTCGCGTCATATGTATGAAACAACTCTCAACACGCTTACACTAGGGCTCACTACCAGATATGAATTGGACCAAGGTCTGAAAGTATTGCTGGAGAGATGTGGAGTTTTATACTTTATTGGGACAAAAGATGTTGATTTTTCATTTATCATGAAGACAGAGGTTGTGATGTCCAGCTTAACAACTTTGGAGGTGTCATATTGTGATGGTTTAAAATACTTGTTATCATCTTCTATGGCTAGAAGTCTCGTGAAGCTCAAACGGCTCAAGATATCAAATTGTAAGGCCATGGAAGAAATAGTATCAACAAGAGAATCCCAAAATAACATAATTGATAAGCTAGAAATCCTGCAACTGGACCGACTTCCAAACCTTGCTAGATTCTGCACAGCTGGAAGTTGTATTGAATTTCCATCATTGGAGAGACTGTATGTGCGAGGATGTAGTAATAAACTAGGAGAAAGTACTGCAAAAGACACTACATTCTGCAGAGAGATTCAAGAGAGAGAGTTGGATGAGAACTTTCAGGCCCACAATGAGACTTGTAGCCAAAACTTTCTTTTTGACGAAAAGATAAGATCTCCAAGACTGGAGATATTGCAAATCATCAATAGCTACCGCTACGGCAAGGACTATAAAAATAGGTTCTTGCAGACCATATGGCACAATCAATTGGATCCAGGCTCATTTTGCAGACTCAGAGAAGTCTGTGTGCAAGATTGTGTCAATCTAAGAAGCATTTTTCCACCTAGTATGATGGGAAGATTGAGTGCTTTAGAAACCTTAAACATAAAAAGTTGCGAGTCAATGGAAGTGGTATTTGATGACCATAGAGAAACAAATGTCAGCGAAACACATGGCACATCAACGACTCAGTTGAAAGACGGTCAAAATCTAAAGTCAGTGGATATAAACTATTGTCACAGATTGAAATACATTTTTCCCGCATCTATGGTAACTAGAGGTCTTCAACAGCTGCAAAAGATGGAAGCGCAACATTGTAATGAAATGGAGAGTGTTGTTGCCACGGAAGAGGGGACTCTAGAATCAACAAGGCATCCCAACTTTGTGTTCCCAAAAGTTGAATCTATGATTTTTGAATCTATGCAAAGGCTTAAGAGCTTCTATCCCGGAATGTATATTTCTGAGTGGCCCTTGCTCAAACATTTCAGGTTTGTAGGTGAAGTGGAGATTTTTGCTGCAGAACTATCAGTCTTTCAGGAAAAGCAAATGCATGCCCCAACTAAACAACCCTTCTTGCTAATTGATAAGGGTTCATTCCCCGTCTTGGAAAAATTGGAGGTGTTTACCGCGGAGATTTTGTATGGTCCATCTTCATCCCCAGTAGAGTCGATCTTTAGCAAACTGAAATATATACATTTTTGGAGCTGTAAACAACCCTGCCTCGAGCATGCGGCAGTGCTTTTCCTTCAGAAATTACCTAATCTGGAAGTCCTAAAATTGTACGAGTCTATGCCCAAAATATTTGTGGACGAAAGAAATGGTTGTGGGGAAACTGTAAGAGTTGGGTCCCTCCCACGTGTAAGAGTTCTAGAGCTCTCCTCTGTGGATGTGAGGCATCTTGGGATAGAGAACCAACCAGCGGGCCCAGTTTTTCCAAACTTGGAATCTCTTAACGTGAGCTGCTGTCTCAGACTAGAGAATTTAGTGTCATCTGCAGTATCCTTCCAGAATCTAACAAAGTTGGAAGTACATGGGTGTGATGGATTGAAGTGCTTAGCACCTTCTTCGGTAGCTAAGAGCTTAGTGCAACTCACGAATTTGACGGTGACATATTGTAAAGAAATTGTAGTATTAGTGGCAGGCAACGAAGATGAAGATGATGATTCAGAAAATGAGATTGCTTTCAGCCGGTTGCAATATTTGAAACTTCGCTGGCTACAAAGTCTACAGGGCTTTTGCTCCCGAAATTGCACTGCCAAACTCCCATTGTCAATCACTGTAGATGTAGACTACTGCCCGATTCAGTTGAAGATTTCCCCTGATGGGGTACCAATAGCAGAAAGCGATGAAGAAATGAAGATGCGGATGGAGATGGAGATGCAGATGAAGATGAAGAGGCAGATGCGTATGATAGAGATGCAGATGTACATGGAGATGGAGATGGAGATGCAGATGCAGATGCAGATGGAGATGGAGATGCAGACGCATTTGGAGATGGAGATGAGGATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1691

Amino Acids

193.09

Weight (kDa)

5.46

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 396 - 554 1.5e-28 NB-ARC domain
LRR_14 PF23598 840 - 949 4.1e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 1015 - 1109 3.2e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1173 - 1244 2.9e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1252 - 1294 8.2e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1521 - 1601 9.9e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1649
Acc16I TGCGCA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 1649
Acc65I GGTACC 1 cut(s) 4888
AccB1I GGYRCC 2 cut(s) 2425, 4888
AccI GTMKAC 2 cut(s) 4786, 4848
AccII CGCG 3 cut(s) 2301, 2884, 4190
AclI AACGTT 1 cut(s) 2477
AclWI GGATC 5 cut(s) 1670, 1896, 2798, 3548, 3561
AcoI YGGCCR 2 cut(s) 2186, 2732
AcuI CTGAAG 8 cut(s) 204, 495, 552, 828, 885, 1722, 1880, 4292
AcvI CACGTG 1 cut(s) 4418
AfiI CCNNNNNNNGG 7 cut(s) 2281, 2607, 3232, 4165, 4480, 4884, 4885
AflII CTTAAG 3 cut(s) 700, 1033, 3992
AflIII ACRYGT 2 cut(s) 2084, 4417
AjnI CCWGG 2 cut(s) 1423, 3556
AjuI GAANNNNNNNTTGG 2 cut(s) 3932, 3964
Alw21I GWGCWC 1 cut(s) 4437
Alw26I GTCTC 6 cut(s) 971, 1821, 3128, 3295, 3410, 4532
AlwI GGATC 5 cut(s) 1670, 1896, 2798, 3548, 3561
AlwNI CAGNNNCTG 1 cut(s) 2807
Ama87I CYCGRG 1 cut(s) 4283
AoxI GGCC 7 cut(s) 1918, 2186, 2732, 3162, 3405, 4028, 4483
ApaI GGGCCC 1 cut(s) 4487
ApeKI GCWGC 7 cut(s) 20, 32, 730, 1063, 3853, 4076, 4521
ArsI GACNNNNNNTTYG 2 cut(s) 2864, 2896
AseI ATTAAT 1 cut(s) 488
Asp700I GAANNNNTTC 3 cut(s) 201, 1284, 1365
Asp718I GGTACC 1 cut(s) 4888
AspLEI GCGC 3 cut(s) 211, 2301, 3871
AspS9I GGNCC 8 cut(s) 2947, 3235, 3406, 4029, 4205, 4407, 4483, 4484
AsuC2I CCSGG 1 cut(s) 4008
AsuHPI GGTGA 7 cut(s) 206, 554, 887, 1673, 2084, 4070, 4678
AsuNHI GCTAGC 1 cut(s) 2744
AvaI CYCGRG 1 cut(s) 4283
AvaII GGWCC 4 cut(s) 2947, 3235, 4205, 4407
BaeGI GKGCMC 1 cut(s) 4487
BaeI ACNNNNGTAYC 4 cut(s) 1837, 1870, 2073, 2106
BalI TGGCCA 2 cut(s) 2188, 2734
BamHI GGATCC 1 cut(s) 3553
BanI GGYRCC 2 cut(s) 2425, 4888
BanII GRGCYC 3 cut(s) 2928, 4437, 4487
BauI CACGAG 1 cut(s) 3125
BbrPI CACGTG 1 cut(s) 4418
BbsI GAAGAC 8 cut(s) 1161, 1472, 1998, 2013, 2511, 2691, 3038, 3836
Bbv12I GWGCWC 1 cut(s) 4437
BbvI GCAGC 7 cut(s) 7, 19, 717, 1050, 3840, 4063, 4508
BceAI ACGGC 3 cut(s) 89, 3155, 3517
BcgI CGANNNNNNTGC 4 cut(s) 2365, 2399, 4608, 4642
BciT130I CCWGG 2 cut(s) 1425, 3558
BciVI GTATCC 1 cut(s) 4570
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 1 cut(s) 4008
BcoDI GTCTC 6 cut(s) 971, 1821, 3128, 3295, 3410, 4532
BfmI CTRYAG 9 cut(s) 36, 731, 800, 1064, 3364, 4077, 4554, 4787, 4839
BfrI CTTAAG 3 cut(s) 700, 1033, 3992
BfuAI ACCTGC 1 cut(s) 1649
BfuI GTATCC 1 cut(s) 4570
BglII AGATCT 6 cut(s) 40, 463, 796, 2140, 2220, 3455
BisI GCNGC 9 cut(s) 21, 33, 255, 731, 1064, 3854, 4077, 4293, 4522
BlpI GCTNAGC 1 cut(s) 4615
BlsI GCNGC 9 cut(s) 22, 34, 256, 732, 1065, 3855, 4078, 4294, 4523
BmcAI AGTACT 2 cut(s) 1225, 3343
Bme1390I CCNGG 3 cut(s) 1425, 3558, 4008
Bme18I GGWCC 4 cut(s) 2947, 3235, 4205, 4407
BmeT110I CYCGRG 1 cut(s) 4283
BmgT120I GGNCC 8 cut(s) 2947, 3235, 3406, 4029, 4205, 4407, 4483, 4484
BmiI GGNNCC 6 cut(s) 2427, 3555, 4408, 4409, 4485, 4890
BmrFI CCNGG 3 cut(s) 1425, 3558, 4008
BmrI ACTGGG 2 cut(s) 4214, 4481
BmtI GCTAGC 1 cut(s) 2748
BmuI ACTGGG 2 cut(s) 4214, 4481
BoxI GACNNNNGTC 2 cut(s) 1472, 2952
BpiI GAAGAC 8 cut(s) 1161, 1472, 1998, 2013, 2511, 2691, 3038, 3836
BplI GAGNNNNNCTC 2 cut(s) 4424, 4456
BpmI CTGGAG 4 cut(s) 147, 1211, 2990, 3488
Bpu1102I GCTNAGC 1 cut(s) 4615
BpuEI CTTGAG 4 cut(s) 1816, 2241, 2710, 3128
BpuMI CCSGG 1 cut(s) 4008
BsaAI YACGTR 1 cut(s) 4418
BsaJI CCNNGG 7 cut(s) 334, 2264, 2562, 2950, 3165, 3903, 4188
BsaWI WCCGGW 2 cut(s) 14, 26
BsaXI ACNNNNNCTCC 4 cut(s) 3290, 3320, 4184, 4214
Bsc4I CCNNNNNNNGG 7 cut(s) 2281, 2607, 3232, 4165, 4480, 4884, 4885
Bse118I RCCGGY 1 cut(s) 4749
Bse1I ACTGG 9 cut(s) 130, 227, 386, 635, 1194, 3237, 3471, 4220, 4487
Bse3DI GCAATG 1 cut(s) 2508
BseBI CCWGG 2 cut(s) 1425, 3558
BseDI CCNNGG 7 cut(s) 334, 2264, 2562, 2950, 3165, 3903, 4188
BseLI CCNNNNNNNGG 7 cut(s) 2281, 2607, 3232, 4165, 4480, 4884, 4885
BseMI GCAATG 1 cut(s) 2508
BseMII CTCAG 9 cut(s) 240, 504, 837, 1140, 2199, 3589, 3764, 4014, 4543
BseNI ACTGG 9 cut(s) 130, 227, 386, 635, 1194, 3237, 3471, 4220, 4487
BseRI GAGGAG 2 cut(s) 350, 4429
BseSI GKGCMC 1 cut(s) 4487
BseXI GCAGC 7 cut(s) 7, 19, 717, 1050, 3840, 4063, 4508
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 2 cut(s) 2233, 3247
Bsh1236I CGCG 3 cut(s) 2301, 2884, 4190
BshFI GGCC 7 cut(s) 1920, 2188, 2734, 3164, 3407, 4030, 4485
BshNI GGYRCC 2 cut(s) 2425, 4888
BsiHKAI GWGCWC 1 cut(s) 4437
BsiHKCI CYCGRG 1 cut(s) 4283
BsiSI CCGG 5 cut(s) 15, 27, 1124, 4008, 4750
BslFI GGGAC 6 cut(s) 437, 770, 1533, 3013, 3928, 4393
BslI CCNNNNNNNGG 7 cut(s) 2281, 2607, 3232, 4165, 4480, 4884, 4885
BsmAI GTCTC 6 cut(s) 971, 1821, 3128, 3295, 3410, 4532
BsmFI GGGAC 6 cut(s) 437, 770, 1533, 3013, 3928, 4393
BsmI GAATGC 2 cut(s) 2100, 2796
BsnI GGCC 7 cut(s) 1920, 2188, 2734, 3164, 3407, 4030, 4485
BsoBI CYCGRG 1 cut(s) 4283
Bsp120I GGGCCC 1 cut(s) 4483
Bsp1286I GDGCHC 3 cut(s) 2928, 4437, 4487
Bsp1407I TGTACA 2 cut(s) 2107, 4986
Bsp1720I GCTNAGC 1 cut(s) 4615
Bsp19I CCATGG 2 cut(s) 334, 3165
BspANI GGCC 7 cut(s) 1920, 2188, 2734, 3164, 3407, 4030, 4485
BspCNI CTCAG 9 cut(s) 241, 505, 838, 1141, 2200, 3588, 3763, 4015, 4542
BspFNI CGCG 3 cut(s) 2301, 2884, 4190
BspHI TCATGA 2 cut(s) 2170, 3027
BspLI GGNNCC 6 cut(s) 2427, 3555, 4408, 4409, 4485, 4890
BspMAI CTGCAG 5 cut(s) 735, 1068, 3368, 4081, 4558
BspMI ACCTGC 1 cut(s) 1649
BspOI GCTAGC 1 cut(s) 2748
BspPI GGATC 5 cut(s) 1670, 1896, 2798, 3548, 3561
BspQI GCTCTTC 1 cut(s) 1423
BspT107I GGYRCC 2 cut(s) 2425, 4888
BspTI CTTAAG 3 cut(s) 700, 1033, 3992
BsrDI GCAATG 1 cut(s) 2508
BsrFI RCCGGY 1 cut(s) 4749
BsrGI TGTACA 2 cut(s) 2107, 4986
BsrI ACTGG 9 cut(s) 130, 227, 386, 635, 1194, 3237, 3471, 4220, 4487
BssAI RCCGGY 1 cut(s) 4749
BssECI CCNNGG 7 cut(s) 334, 2264, 2562, 2950, 3165, 3903, 4188
BssSI CACGAG 1 cut(s) 3125
BssT1I CCWWGG 5 cut(s) 334, 2264, 2562, 2950, 3165
Bst2BI CACGAG 1 cut(s) 3125
Bst2UI CCWGG 2 cut(s) 1425, 3558
Bst6I CTCTTC 5 cut(s) 969, 1423, 2436, 3903, 4949
BstAFI CTTAAG 3 cut(s) 700, 1033, 3992
BstAPI GCANNNNNTGC 1 cut(s) 2018
BstAUI TGTACA 2 cut(s) 2107, 4986
BstBAI YACGTR 1 cut(s) 4418
BstC8I GCNNGC 8 cut(s) 259, 905, 2746, 4113, 4290, 4483, 4702, 4775
BstDSI CCRYGG 4 cut(s) 334, 3165, 3903, 4188
BstFNI CGCG 3 cut(s) 2301, 2884, 4190
BstHHI GCGC 3 cut(s) 211, 2301, 3871
BstMAI GTCTC 6 cut(s) 971, 1821, 3128, 3295, 3410, 4532
BstMWI GCNNNNNNNGC 6 cut(s) 17, 29, 2018, 2590, 3139, 3567
BstNI CCWGG 2 cut(s) 1425, 3558
BstNSI RCATGY 4 cut(s) 2088, 2500, 4115, 4292
BstPAI GACNNNNGTC 2 cut(s) 1472, 2952
BstSCI CCNGG 3 cut(s) 1423, 3556, 4006
BstSFI CTRYAG 9 cut(s) 36, 731, 800, 1064, 3364, 4077, 4554, 4787, 4839
BstSLI GKGCMC 1 cut(s) 4487
BstUI CGCG 3 cut(s) 2301, 2884, 4190
BstV1I GCAGC 7 cut(s) 7, 19, 717, 1050, 3840, 4063, 4508
BstV2I GAAGAC 8 cut(s) 1161, 1472, 1998, 2013, 2511, 2691, 3038, 3836
BstX2I RGATCY 9 cut(s) 40, 463, 796, 1675, 2140, 2220, 2803, 3455, 3553
BstYI RGATCY 9 cut(s) 40, 463, 796, 1675, 2140, 2220, 2803, 3455, 3553
BsuI GTATCC 1 cut(s) 4570
BsuRI GGCC 7 cut(s) 1920, 2188, 2734, 3164, 3407, 4030, 4485
BtgI CCRYGG 4 cut(s) 334, 3165, 3903, 4188
BtgZI GCGATG 1 cut(s) 4920
BtsI GCAGTG 2 cut(s) 4302, 4812
BtsIMutI CAGTG 6 cut(s) 862, 1743, 3786, 4302, 4812, 4836
BveI ACCTGC 1 cut(s) 1649
Cac8I GCNNGC 8 cut(s) 259, 905, 2746, 4113, 4290, 4483, 4702, 4775
CaiI CAGNNNCTG 1 cut(s) 2807
CciI TCATGA 2 cut(s) 2170, 3027
CfoI GCGC 3 cut(s) 211, 2301, 3871
Cfr10I RCCGGY 1 cut(s) 4749
Cfr13I GGNCC 8 cut(s) 2947, 3235, 3406, 4029, 4205, 4407, 4483, 4484
Cfr42I CCGCGG 1 cut(s) 4191
CseI GACGC 4 cut(s) 188, 2018, 2873, 5053
CspCI CAANNNNNGTGG 6 cut(s) 1258, 1293, 1699, 1734, 3672, 3707
DraI TTTAAA 2 cut(s) 2463, 3090
EaeI YGGCCR 2 cut(s) 2186, 2732
Eam1104I CTCTTC 5 cut(s) 969, 1423, 2436, 3903, 4949
EarI CTCTTC 5 cut(s) 969, 1423, 2436, 3903, 4949
EciI GGCGGA 1 cut(s) 602
Ecl136II GAGCTC 1 cut(s) 4435
Eco130I CCWWGG 5 cut(s) 334, 2264, 2562, 2950, 3165
Eco24I GRGCYC 3 cut(s) 2928, 4437, 4487
Eco32I GATATC 1 cut(s) 3150
Eco47I GGWCC 4 cut(s) 2947, 3235, 4205, 4407
Eco53kI GAGCTC 1 cut(s) 4435
Eco57I CTGAAG 8 cut(s) 204, 495, 552, 828, 885, 1722, 1880, 4292
Eco72I CACGTG 1 cut(s) 4418
Eco88I CYCGRG 1 cut(s) 4283
EcoICRI GAGCTC 1 cut(s) 4435
EcoO109I RGGNCCY 1 cut(s) 4407
EcoRI GAATTC 2 cut(s) 611, 944
EcoRII CCWGG 2 cut(s) 1423, 3556
EcoRV GATATC 1 cut(s) 3150
EcoT14I CCWWGG 5 cut(s) 334, 2264, 2562, 2950, 3165
EcoT22I ATGCAT 2 cut(s) 2498, 4113
EcoT38I GRGCYC 3 cut(s) 2928, 4437, 4487
ErhI CCWWGG 5 cut(s) 334, 2264, 2562, 2950, 3165
FalI AAGNNNNNCTT 2 cut(s) 1832, 1864
FaqI GGGAC 6 cut(s) 437, 770, 1533, 3013, 3928, 4393
FauI CCCGC 2 cut(s) 3829, 4474
FauNDI CATATG 4 cut(s) 448, 1114, 2889, 3536
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 2 cut(s) 4786, 4848
Fnu4HI GCNGC 9 cut(s) 21, 33, 255, 731, 1064, 3854, 4077, 4293, 4522
FriOI GRGCYC 3 cut(s) 2928, 4437, 4487
Fsp4HI GCNGC 9 cut(s) 21, 33, 255, 731, 1064, 3854, 4077, 4293, 4522
FspAI RTGCGCAY 1 cut(s) 210
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 3 cut(s) 210, 2300, 3870
GluI GCNGC 9 cut(s) 21, 33, 255, 731, 1064, 3854, 4077, 4293, 4522
GsaI CCCAGC 1 cut(s) 316
GsuI CTGGAG 4 cut(s) 147, 1211, 2990, 3488
HaeIII GGCC 7 cut(s) 1920, 2188, 2734, 3164, 3407, 4030, 4485
HapII CCGG 5 cut(s) 15, 27, 1124, 4008, 4750
HgaI GACGC 4 cut(s) 188, 2018, 2873, 5053
HhaI GCGC 3 cut(s) 211, 2301, 3871
Hin6I GCGC 3 cut(s) 209, 2299, 3869
HinP1I GCGC 3 cut(s) 209, 2299, 3869
HincII GTYRAC 4 cut(s) 1554, 1568, 2038, 2726
HindII GTYRAC 4 cut(s) 1554, 1568, 2038, 2726
HindIII AAGCTT 1 cut(s) 2042
HpaII CCGG 5 cut(s) 15, 27, 1124, 4008, 4750
HphI GGTGA 7 cut(s) 206, 554, 887, 1673, 2084, 4070, 4678
Hpy99I CGWCG 3 cut(s) 182, 369, 372
HpyCH4IV ACGT 7 cut(s) 519, 783, 852, 1393, 2477, 4417, 4515
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 29, 2018, 2590, 3139, 3567
HpySE526I ACGT 7 cut(s) 519, 783, 852, 1393, 2477, 4417, 4515
HspAI GCGC 3 cut(s) 209, 2299, 3869
KflI GGGWCCC 1 cut(s) 4407
KpnI GGTACC 1 cut(s) 4892
Ksp22I TGATCA 1 cut(s) 414
KspI CCGCGG 1 cut(s) 4191
LguI GCTCTTC 1 cut(s) 1423
LmnI GCTCC 5 cut(s) 17, 29, 363, 4263, 4805
Lsp1109I GCAGC 7 cut(s) 7, 19, 717, 1050, 3840, 4063, 4508
MaeII ACGT 7 cut(s) 519, 783, 852, 1393, 2477, 4417, 4515
MaeIII GTNAC 8 cut(s) 403, 643, 739, 1389, 1865, 3797, 3832, 4666
MfeI CAATTG 4 cut(s) 969, 1011, 1874, 3548
MflI RGATCY 9 cut(s) 40, 463, 796, 1675, 2140, 2220, 2803, 3455, 3553
MhlI GDGCHC 3 cut(s) 2928, 4437, 4487
MlsI TGGCCA 2 cut(s) 2188, 2734
MluNI TGGCCA 2 cut(s) 2188, 2734
MmeI TCCRAC 6 cut(s) 28, 49, 2500, 2823, 3369, 4563
Mox20I TGGCCA 2 cut(s) 2188, 2734
Mph1103I ATGCAT 2 cut(s) 2498, 4113
MroXI GAANNNNTTC 3 cut(s) 201, 1284, 1365
MscI TGGCCA 2 cut(s) 2188, 2734
MslI CAYNNNNRTG 6 cut(s) 558, 891, 2892, 3879, 4596, 4994
Msp20I TGGCCA 2 cut(s) 2188, 2734
MspA1I CMGCKG 5 cut(s) 2654, 3269, 3853, 4190, 4481
MspCI CTTAAG 3 cut(s) 700, 1033, 3992
MspI CCGG 5 cut(s) 15, 27, 1124, 4008, 4750
MspR9I CCNGG 3 cut(s) 1425, 3558, 4008
MunI CAATTG 4 cut(s) 969, 1011, 1874, 3548
Mva1269I GAATGC 2 cut(s) 2100, 2796
MvaI CCWGG 2 cut(s) 1425, 3558
MvnI CGCG 3 cut(s) 2301, 2884, 4190
MwoI GCNNNNNNNGC 6 cut(s) 17, 29, 2018, 2590, 3139, 3567
NciI CCSGG 1 cut(s) 4008
NcoI CCATGG 2 cut(s) 334, 3165
NdeI CATATG 4 cut(s) 448, 1114, 2889, 3536
NheI GCTAGC 1 cut(s) 2744
NlaIV GGNNCC 6 cut(s) 2427, 3555, 4408, 4409, 4485, 4890
NmuCI GTSAC 3 cut(s) 643, 3797, 4666
NsbI TGCGCA 1 cut(s) 210
NsiI ATGCAT 2 cut(s) 2498, 4113
NspI RCATGY 4 cut(s) 2088, 2500, 4115, 4292
PaeI GCATGC 2 cut(s) 4115, 4292
PaeR7I CTCGAG 1 cut(s) 4283
PagI TCATGA 2 cut(s) 2170, 3027
PaqCI CACCTGC 1 cut(s) 1649
PciI ACATGT 1 cut(s) 2084
PciSI GCTCTTC 1 cut(s) 1423
PctI GAATGC 2 cut(s) 2100, 2796
PdmI GAANNNNTTC 3 cut(s) 201, 1284, 1365
PfoI TCCNGGA 1 cut(s) 4006
PkrI GCNGC 9 cut(s) 22, 34, 256, 732, 1065, 3855, 4078, 4294, 4523
PmaCI CACGTG 1 cut(s) 4418
PmlI CACGTG 1 cut(s) 4418
Ppu21I YACGTR 1 cut(s) 4418
PpuMI RGGWCCY 1 cut(s) 4407
PscI ACATGT 1 cut(s) 2084
PshAI GACNNNNGTC 2 cut(s) 1472, 2952
PshBI ATTAAT 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 4437
Psp1406I AACGTT 1 cut(s) 2477
Psp5II RGGWCCY 1 cut(s) 4407
Psp6I CCWGG 2 cut(s) 1423, 3556
PspCI CACGTG 1 cut(s) 4418
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 2 cut(s) 1423, 3556
PspN4I GGNNCC 6 cut(s) 2427, 3555, 4408, 4409, 4485, 4890
PspOMI GGGCCC 1 cut(s) 4483
PspPI GGNCC 8 cut(s) 2947, 3235, 3406, 4029, 4205, 4407, 4483, 4484
PspPPI RGGWCCY 1 cut(s) 4407
PspXI VCTCGAGB 1 cut(s) 4283
PsrI GAACNNNNNNTAC 2 cut(s) 1207, 1239
PstI CTGCAG 5 cut(s) 735, 1068, 3368, 4081, 4558
PstNI CAGNNNCTG 1 cut(s) 2807
PsuI RGATCY 9 cut(s) 40, 463, 796, 1675, 2140, 2220, 2803, 3455, 3553
PvuII CAGCTG 3 cut(s) 2654, 3269, 3853
RseI CAYNNNNRTG 6 cut(s) 558, 891, 2892, 3879, 4596, 4994
SacI GAGCTC 1 cut(s) 4437
SacII CCGCGG 1 cut(s) 4191
SapI GCTCTTC 1 cut(s) 1423
SatI GCNGC 9 cut(s) 21, 33, 255, 731, 1064, 3854, 4077, 4293, 4522
Sau96I GGNCC 8 cut(s) 2947, 3235, 3406, 4029, 4205, 4407, 4483, 4484
ScaI AGTACT 2 cut(s) 1225, 3343
ScrFI CCNGG 3 cut(s) 1425, 3558, 4008
SduI GDGCHC 3 cut(s) 2928, 4437, 4487
SfcI CTRYAG 9 cut(s) 36, 731, 800, 1064, 3364, 4077, 4554, 4787, 4839
Sfr274I CTCGAG 1 cut(s) 4283
Sfr303I CCGCGG 1 cut(s) 4191
SgrBI CCGCGG 1 cut(s) 4191
SinI GGWCC 4 cut(s) 2947, 3235, 4205, 4407
SlaI CTCGAG 1 cut(s) 4283
SmiMI CAYNNNNRTG 6 cut(s) 558, 891, 2892, 3879, 4596, 4994
SmlI CTYRAG 8 cut(s) 700, 1033, 1795, 2256, 2689, 3143, 3992, 4283
SmoI CTYRAG 8 cut(s) 700, 1033, 1795, 2256, 2689, 3143, 3992, 4283
SphI GCATGC 2 cut(s) 4115, 4292
SspI AATATT 5 cut(s) 1548, 2330, 2859, 4362, 4760
SstI GAGCTC 1 cut(s) 4437
StyD4I CCNGG 3 cut(s) 1423, 3556, 4006
StyI CCWWGG 5 cut(s) 334, 2264, 2562, 2950, 3165
TaiI ACGT 7 cut(s) 522, 786, 855, 1396, 2480, 4420, 4518
TaqI TCGA 6 cut(s) 219, 370, 1806, 1857, 4229, 4284
TaqII GACCGA 1 cut(s) 3252
TatI WGTACW 6 cut(s) 1223, 1997, 2107, 3341, 4588, 4986
TauI GCSGC 2 cut(s) 257, 4295
TscAI CASTG 6 cut(s) 862, 1750, 3786, 4302, 4819, 4843
TseFI GTSAC 3 cut(s) 643, 3797, 4666
TseI GCWGC 7 cut(s) 20, 32, 730, 1063, 3853, 4076, 4521
Tsp45I GTSAC 3 cut(s) 643, 3797, 4666
TspGWI ACGGA 4 cut(s) 353, 484, 512, 3920
TspRI CASTG 6 cut(s) 862, 1750, 3786, 4302, 4819, 4843
Vha464I CTTAAG 3 cut(s) 700, 1033, 3992
VpaK11BI GGWCC 4 cut(s) 2947, 3235, 4205, 4407
VspI ATTAAT 1 cut(s) 488
XbaI TCTAGA 2 cut(s) 3919, 4429
XceI RCATGY 4 cut(s) 2088, 2500, 4115, 4292
XcmI CCANNNNNNNNNTGG 2 cut(s) 2941, 4363
XhoI CTCGAG 1 cut(s) 4283
XmiI GTMKAC 2 cut(s) 4786, 4848
XmnI GAANNNNTTC 3 cut(s) 201, 1284, 1365
ZrmI AGTACT 2 cut(s) 1225, 3343
Zsp2I ATGCAT 2 cut(s) 2498, 4113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.