Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002032

Physical Location & Seq

Genomic Coordinates Reverse (-)

49539614 .. 49552238

Gene Structure 12625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGATGGGAAGATTGAGTGCTTTAGAAACCTTAAACATAAAAAAGTGCGAGTCAATGGAAGTGGTATTTGATGAACGTACAGAAACTAATGTCAACAAAACACATGGCACCACTCAGTTGAAAGACGGTCAAAATCTAAAGTCAGTGGATATATACCGTTGTGACGGATTGAAGTACATTTTTCCCGCATCTATGGTAACTAGAGGTCTTCAACAGCTGCAAAAGATGAGAGTGCTTGATTGTGATGAAATGGAGAGTGTTGTTGCCAAGGAAGAGGGGACTCTAGAATCAACAAGGCATCCCAACTTTGTGTTCCCAAAAGTTGAATTTATGCTTTTTGAATCTATGCAAAGGCTTAAGAGCTTCTATCCCGGAATGTATATTTCTGAGTGGCCCTTACTCAAACATTTCAAGTTTGAAGGTGAAGTGGAGATTTTTGCTGCAGAACTATCAGTCTTTCAGGAAGGGCAAATGCATGCTCCAACTAAACAACCTTTCTTGCTAATTGATAAGGGTTCATTCCCCGTCTTGGAAAAATTGGAGGTGTCTACCGCGGAGATTTTGTATGGTCCATCTTCATCCCCAGTAGAGTCGATCTTTAGCAGACTAAAATATATACATTTTTGGTGGTGTAAACCCTGCCTCGAGCATGCGGCAGTGCTTTTCCTTCAGAAATTACCTAATCTGGAAGTCCTAAAATTGTACAGGATTATGCCCAAAATATTTGCGGACGAGAGAAATAGTTGTGGGGAAACTGTAAGAGTTGGGTCCCTCCCAAGTGTAAGAGTTCTACAGCTCTGGGATGTAGATGTGGGGCATCTTCGGATAGAGAACCAGCCAGCGGGCCCAGTTTTTCCAAACTTGGAATCTCTTAACGTGAGCGAATGTTACAGACTAGAGAATTTAGTGTCATCTGCAGTATCCTTCCAGAATCTAACAAAGTTGGAAGTATATAAGTGTGATGGATTGAAGTGTTTAGCACCTTCTTCGGTAGCTAAAAGCTTAGTGCAACTAACGAATTTGACAGTGGCACATTGTACAGAAATTGAAGTATTAGTGGCAGGCAACGAAGATGATGATACAGAAAATGAGATTGCTTTCAGCCGGTTGCAACATTTGGAACTTTACTGGCTACAAAGTCTACAGGGCTTTTGCTCACGAAATTGCACTGCCAAACTCCCATTGTCAATCATTGTAGTTGTAGTCGACTGCCCGATTCAGTTGAAGATTTCCCCTGACGGCCGGGTACCAATAGCAGAAAGCCTAAATATAACAAATGAAGATGAAGGTGAAGATGGAGATGAAAATGGAGATGGAGAAGGAGATGCAGAAGGAGATGAAGATGAAGATGAAGATGCAGATGGAGATGGAGATGGAGATGGAGATGGAGATGAGGATGGGATGAAAATGGAGATGGAGATAGAAGACACAGCTGATGATGACCACTCAACTACTTGTGTCCTTGGCAATGCTGTCAGCTTCGATGTAAGCTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

499

Amino Acids

55.82

Weight (kDa)

4.49

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	39 - 82	1.1e-07	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	308 - 386	2.5e-10	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12370 AT1G12370 AT1G12370
fragaria_vesca	FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790
malus_domestica	MD04G1078900.v1.1
prunus_persica	Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1
pyrus_communis	pycom04g07070
rosa_chinensis	RchiOBHm_Chr7g0201341 RchiOBHm_Chr7g0201371 RchiOBHm_Chr7g0201391
rosa_laevigata	RLG00000003679
rosa_multiflora	Rmu_co8093880.1_g000001 Rmu_co8322589.1_g000001 Rmu_sc0001469.1_g000010 Rmu_sc0001469.1_g000012 Rmu_sc0013971.1_g000001 Rmu_sc0013971.1_g000004 Rmu_sc0024878.1_g000001 Rmu_sc0024878.1_g000004 Rmu_sc0026181.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226330 Rroxscaffold_3G00255330 Rroxscaffold_3G00255340 Rroxscaffold_3G00255350
rosa_rugosa	Rorug07G0062600 Rorug07G0062700
rosa_samantha	Rh7AG190200 Rh7BG192600 Rh7CG200900 Rh7CG201300 Rh7CG201400 Rh7CG201500 Rh7DG195000 Rh7DG195200
rosa_wichuraiana	Rw7G016680 Rw7G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1246
AccB1I	GGYRCC	2 cut(s)	107, 1246
AccI	GTMKAC	3 cut(s)	548, 1141, 1206
AccII	CGCG	1 cut(s)	554
AciI	CCGC	6 cut(s)	186, 552, 554, 653, 728, 842
AcoI	YGGCCR	1 cut(s)	1240
AcsI	RAATTY	3 cut(s)	326, 901, 1018
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	5 cut(s)	79, 176, 704, 1039, 1248
AfiI	CCNNNNNNNGG	2 cut(s)	529, 841
AflII	CTTAAG	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	8 cut(s)	217, 363, 796, 995, 1002, 1433, 1479, 1491
AluI	AGCT	8 cut(s)	217, 363, 796, 995, 1002, 1433, 1479, 1491
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	392, 844, 1240
ApaI	GGGCCC	1 cut(s)	848
ApeKI	GCWGC	2 cut(s)	217, 440
ApoI	RAATTY	3 cut(s)	326, 901, 1018
Asp718I	GGTACC	1 cut(s)	1246
AspS9I	GGNCC	5 cut(s)	393, 569, 768, 844, 845
AsuC2I	CCSGG	2 cut(s)	372, 1244
AsuHPI	GGTGA	2 cut(s)	434, 1301
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	569, 768
BaeGI	GKGCMC	1 cut(s)	848
BanI	GGYRCC	2 cut(s)	107, 1246
BanII	GRGCYC	1 cut(s)	848
BbsI	GAAGAC	2 cut(s)	200, 1431
BbvI	GCAGC	2 cut(s)	204, 427
BceAI	ACGGC	1 cut(s)	1255
BcgI	CGANNNNNNTGC	2 cut(s)	969, 1003
BciVI	GTATCC	1 cut(s)	931
BcnI	CCSGG	2 cut(s)	372, 1244
BfaI	CTAG	3 cut(s)	201, 284, 896
BfmI	CTRYAG	4 cut(s)	441, 791, 915, 1142
BfrI	CTTAAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	931
BisI	GCNGC	3 cut(s)	218, 441, 654
BlsI	GCNGC	3 cut(s)	219, 442, 655
Bme1390I	CCNGG	2 cut(s)	372, 1244
Bme18I	GGWCC	2 cut(s)	569, 768
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	5 cut(s)	393, 569, 768, 844, 845
BmiI	GGNNCC	5 cut(s)	109, 769, 770, 846, 1248
BmrFI	CCNGG	2 cut(s)	372, 1244
BmrI	ACTGGG	2 cut(s)	578, 842
BmsI	GCATC	5 cut(s)	197, 307, 826, 1315, 1345
BmuI	ACTGGG	2 cut(s)	578, 842
BpiI	GAAGAC	2 cut(s)	200, 1431
BpuMI	CCSGG	2 cut(s)	372, 1244
BsaJI	CCNNGG	3 cut(s)	267, 552, 1462
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 841
Bse118I	RCCGGY	1 cut(s)	1104
Bse1I	ACTGG	3 cut(s)	584, 848, 1133
Bse3DI	GCAATG	1 cut(s)	1474
BseDI	CCNNGG	3 cut(s)	267, 552, 1462
BseGI	GGATG	5 cut(s)	298, 578, 808, 1402, 1407
BseLI	CCNNNNNNNGG	2 cut(s)	529, 841
BseMI	GCAATG	1 cut(s)	1474
BseMII	CTCAG	2 cut(s)	128, 378
BseNI	ACTGG	3 cut(s)	584, 848, 1133
BseSI	GKGCMC	1 cut(s)	848
BseX3I	CGGCCG	1 cut(s)	1240
BseXI	GCAGC	2 cut(s)	204, 427
Bsh1236I	CGCG	1 cut(s)	554
Bsh1285I	CGRYCG	1 cut(s)	1243
BshFI	GGCC	3 cut(s)	394, 846, 1242
BshNI	GGYRCC	2 cut(s)	107, 1246
BsiEI	CGRYCG	1 cut(s)	1243
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	372, 1105, 1243
BslFI	GGGAC	2 cut(s)	292, 754
BslI	CCNNNNNNNGG	2 cut(s)	529, 841
BsmFI	GGGAC	2 cut(s)	292, 754
BsnI	GGCC	3 cut(s)	394, 846, 1242
BsoBI	CYCGRG	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	848
Bsp1407I	TGTACA	2 cut(s)	702, 1037
Bsp143I	GATC	1 cut(s)	594
BspACI	CCGC	6 cut(s)	186, 552, 554, 653, 728, 842
BspANI	GGCC	3 cut(s)	394, 846, 1242
BspCNI	CTCAG	2 cut(s)	127, 379
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	5 cut(s)	109, 769, 770, 846, 1248
BspMAI	CTGCAG	2 cut(s)	445, 919
BspT107I	GGYRCC	2 cut(s)	107, 1246
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	1474
BsrFI	RCCGGY	1 cut(s)	1104
BsrGI	TGTACA	2 cut(s)	702, 1037
BsrI	ACTGG	3 cut(s)	584, 848, 1133
BssAI	RCCGGY	1 cut(s)	1104
BssECI	CCNNGG	3 cut(s)	267, 552, 1462
BssMI	GATC	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	267, 1462
Bst4CI	ACNGT	4 cut(s)	128, 158, 757, 1027
Bst6I	CTCTTC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	356
BstAUI	TGTACA	2 cut(s)	702, 1037
BstC8I	GCNNGC	5 cut(s)	477, 651, 840, 844, 1063
BstDEI	CTNAG	4 cut(s)	114, 387, 1003, 1492
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	5 cut(s)	298, 578, 808, 1402, 1407
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	1 cut(s)	597
BstMBI	GATC	1 cut(s)	594
BstMCI	CGRYCG	1 cut(s)	1243
BstNSI	RCATGY	2 cut(s)	479, 653
BstSCI	CCNGG	2 cut(s)	370, 1242
BstSFI	CTRYAG	4 cut(s)	441, 791, 915, 1142
BstSLI	GKGCMC	1 cut(s)	848
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	204, 427
BstV2I	GAAGAC	2 cut(s)	200, 1431
BstZI	CGGCCG	1 cut(s)	1240
BsuI	GTATCC	1 cut(s)	931
BsuRI	GGCC	3 cut(s)	394, 846, 1242
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	5 cut(s)	298, 578, 808, 1402, 1407
BtsI	GCAGTG	2 cut(s)	663, 1167
BtsIMutI	CAGTG	4 cut(s)	150, 663, 1032, 1167
Cac8I	GCNNGC	5 cut(s)	477, 651, 840, 844, 1063
Cfr10I	RCCGGY	1 cut(s)	1104
Cfr13I	GGNCC	5 cut(s)	393, 569, 768, 844, 845
Cfr42I	CCGCGG	1 cut(s)	555
Csp6I	GTAC	5 cut(s)	78, 175, 703, 1038, 1247
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	3 cut(s)	104, 476, 650
CviQI	GTAC	5 cut(s)	78, 175, 703, 1038, 1247
DdeI	CTNAG	4 cut(s)	114, 387, 1003, 1492
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	1240
EagI	CGGCCG	1 cut(s)	1240
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EclXI	CGGCCG	1 cut(s)	1240
Eco130I	CCWWGG	2 cut(s)	267, 1462
Eco24I	GRGCYC	1 cut(s)	848
Eco47I	GGWCC	2 cut(s)	569, 768
Eco52I	CGGCCG	1 cut(s)	1240
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	768
EcoT14I	CCWWGG	2 cut(s)	267, 1462
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	2 cut(s)	267, 1462
FaeI	CATG	3 cut(s)	107, 479, 653
FaqI	GGGAC	2 cut(s)	292, 754
FatI	CATG	3 cut(s)	103, 475, 649
FauI	CCCGC	2 cut(s)	193, 835
FblI	GTMKAC	3 cut(s)	548, 1141, 1206
Fnu4HI	GCNGC	3 cut(s)	218, 441, 654
FokI	GGATG	5 cut(s)	285, 565, 815, 1409, 1414
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	3 cut(s)	218, 441, 654
FspBI	CTAG	3 cut(s)	201, 284, 896
GluI	GCNGC	3 cut(s)	218, 441, 654
HaeIII	GGCC	3 cut(s)	394, 846, 1242
HapII	CCGG	3 cut(s)	372, 1105, 1243
Hin1II	CATG	3 cut(s)	107, 479, 653
HincII	GTYRAC	2 cut(s)	94, 1207
HindII	GTYRAC	2 cut(s)	94, 1207
HindIII	AAGCTT	2 cut(s)	1000, 1489
HinfI	GANTC	8 cut(s)	50, 280, 287, 341, 590, 866, 931, 1216
HpaII	CCGG	3 cut(s)	372, 1105, 1243
HphI	GGTGA	2 cut(s)	434, 1301
Hpy166II	GTNNAC	5 cut(s)	94, 549, 635, 1142, 1207
Hpy188I	TCNGA	3 cut(s)	388, 672, 825
Hpy188III	TCNNGA	5 cut(s)	284, 461, 686, 928, 1158
Hpy8I	GTNNAC	5 cut(s)	94, 549, 635, 1142, 1207
HpyAV	CCTTC	8 cut(s)	413, 458, 677, 934, 993, 1280, 1313, 1325
HpyCH4III	ACNGT	4 cut(s)	128, 158, 757, 1027
HpyCH4IV	ACGT	2 cut(s)	76, 876
HpyF3I	CTNAG	4 cut(s)	114, 387, 1003, 1492
HpySE526I	ACGT	2 cut(s)	76, 876
Hsp92II	CATG	3 cut(s)	107, 479, 653
KflI	GGGWCCC	1 cut(s)	768
KpnI	GGTACC	1 cut(s)	1250
KspI	CCGCGG	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	2 cut(s)	204, 427
LweI	GCATC	5 cut(s)	197, 307, 826, 1315, 1345
MaeI	CTAG	3 cut(s)	201, 284, 896
MaeII	ACGT	2 cut(s)	76, 876
MaeIII	GTNAC	3 cut(s)	161, 196, 887
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	848
MluCI	AATT	9 cut(s)	326, 504, 536, 674, 698, 901, 1018, 1044, 1162
MlyI	GAGTC	3 cut(s)	59, 274, 599
MmeI	TCCRAC	2 cut(s)	506, 924
MnlI	CCTC	6 cut(s)	197, 268, 535, 653, 782, 1387
Mph1103I	ATGCAT	1 cut(s)	477
MseI	TTAA	3 cut(s)	32, 357, 873
MspA1I	CMGCKG	4 cut(s)	217, 554, 842, 1433
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	3 cut(s)	372, 1105, 1243
MspR9I	CCNGG	2 cut(s)	372, 1244
MvnI	CGCG	1 cut(s)	554
NciI	CCSGG	2 cut(s)	372, 1244
NdeII	GATC	1 cut(s)	594
NlaIII	CATG	3 cut(s)	107, 479, 653
NlaIV	GGNNCC	5 cut(s)	109, 769, 770, 846, 1248
NmuCI	GTSAC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	2 cut(s)	479, 653
PaeI	GCATGC	2 cut(s)	479, 653
PaeR7I	CTCGAG	1 cut(s)	644
PfeI	GAWTC	5 cut(s)	287, 341, 866, 931, 1216
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	219, 442, 655
PleI	GAGTC	3 cut(s)	58, 274, 598
PpsI	GAGTC	3 cut(s)	58, 274, 598
PpuMI	RGGWCCY	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	768
PspN4I	GGNNCC	5 cut(s)	109, 769, 770, 846, 1248
PspOMI	GGGCCC	1 cut(s)	844
PspPI	GGNCC	5 cut(s)	393, 569, 768, 844, 845
PspPPI	RGGWCCY	1 cut(s)	768
PspXI	VCTCGAGB	1 cut(s)	644
PstI	CTGCAG	2 cut(s)	445, 919
PvuII	CAGCTG	2 cut(s)	217, 1433
RsaI	GTAC	5 cut(s)	79, 176, 704, 1039, 1248
RsaNI	GTAC	5 cut(s)	78, 175, 703, 1038, 1247
SacII	CCGCGG	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	1205
SaqAI	TTAA	3 cut(s)	32, 357, 873
SatI	GCNGC	3 cut(s)	218, 441, 654
Sau3AI	GATC	1 cut(s)	594
Sau96I	GGNCC	5 cut(s)	393, 569, 768, 844, 845
SchI	GAGTC	3 cut(s)	59, 274, 599
ScrFI	CCNGG	2 cut(s)	372, 1244
SduI	GDGCHC	1 cut(s)	848
SfaNI	GCATC	5 cut(s)	197, 307, 826, 1315, 1345
SfcI	CTRYAG	4 cut(s)	441, 791, 915, 1142
Sfr274I	CTCGAG	1 cut(s)	644
Sfr303I	CCGCGG	1 cut(s)	555
SgrBI	CCGCGG	1 cut(s)	555
SinI	GGWCC	2 cut(s)	569, 768
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	356, 644
SmoI	CTYRAG	2 cut(s)	356, 644
SphI	GCATGC	2 cut(s)	479, 653
Sse9I	AATT	9 cut(s)	326, 504, 536, 674, 698, 901, 1018, 1044, 1162
SsiI	CCGC	6 cut(s)	186, 552, 554, 653, 728, 842
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	3 cut(s)	201, 284, 896
StyD4I	CCNGG	2 cut(s)	370, 1242
StyI	CCWWGG	2 cut(s)	267, 1462
TaaI	ACNGT	4 cut(s)	128, 158, 757, 1027
TaiI	ACGT	2 cut(s)	79, 879
TaqI	TCGA	4 cut(s)	593, 645, 1206, 1482
TasI	AATT	9 cut(s)	326, 504, 536, 674, 698, 901, 1018, 1044, 1162
TatI	WGTACW	3 cut(s)	174, 702, 1037
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	5 cut(s)	287, 341, 866, 931, 1216
Tru1I	TTAA	3 cut(s)	32, 357, 873
Tru9I	TTAA	3 cut(s)	32, 357, 873
TscAI	CASTG	4 cut(s)	150, 663, 1032, 1174
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	217, 440
Tsp45I	GTSAC	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	4 cut(s)	150, 663, 1032, 1174
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	569, 768
XapI	RAATTY	3 cut(s)	326, 901, 1018
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	2 cut(s)	479, 653
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	3 cut(s)	548, 1141, 1206
XspI	CTAG	3 cut(s)	201, 284, 896
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.